Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g049770.4 Solanum lycopersicum HOM05D003924 ORTHO05D005216 0.0e+00 1291.2 661 100.0
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 0.0e+00 1287.3 661 99.7
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 0.0e+00 1245.0 668 95.5
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 7.4e-305 1050.0 671 82.4
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 4.8e-304 1047.3 650 84.5
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 3.0e-298 1028.1 666 80.6
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 1.8e-295 1018.8 669 79.1
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 9.0e-295 1016.5 668 79.5
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 2.0e-294 1015.4 667 80.4
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 2.9e-293 1011.5 667 79.8
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 3.8e-293 1011.1 659 81.8
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 6.5e-293 1010.4 665 80.3
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 2.1e-291 1005.4 667 78.3
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 3.0e-290 1001.5 665 79.4
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 6.7e-290 1000.3 668 78.0
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 9.7e-289 996.5 669 78.8
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 1.7e-288 995.7 689 76.5
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 4.8e-288 994.2 666 78.8
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 3.1e-287 991.5 665 78.8
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 1.2e-286 989.6 667 79.3
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 1.5e-286 989.2 666 75.7
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 2.6e-286 988.4 665 78.2
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 3.4e-286 988.0 669 76.8
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 4.5e-286 987.6 665 77.4
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 5.9e-286 987.3 668 78.7
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 5.9e-286 987.3 667 79.0
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 1.7e-285 985.7 665 78.0
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 3.8e-285 984.6 665 78.8
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 6.5e-285 983.8 664 77.9
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 1.1e-284 983.0 675 77.8
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 4.2e-284 981.1 668 76.8
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 7.2e-284 980.3 666 77.6
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 9.4e-284 979.9 667 76.6
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 6.1e-283 977.2 664 77.7
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 1.4e-282 976.1 669 76.7
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 5.1e-282 974.2 666 77.6
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 5.1e-282 974.2 671 77.2
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 2.0e-281 972.2 665 77.7
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 3.3e-281 971.5 666 77.3
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 5.7e-281 970.7 668 77.5
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 1.3e-280 969.5 669 74.9
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 2.8e-280 968.4 666 77.9
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 3.7e-280 968.0 667 76.5
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 6.3e-280 967.2 665 76.2
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 6.3e-280 967.2 670 76.9
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 1.1e-279 966.5 667 77.2
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 1.8e-279 965.7 675 75.9
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 9.1e-279 963.4 671 75.9
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 1.5e-278 962.6 666 76.4
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 5.9e-278 960.7 673 76.1
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 1.3e-277 959.5 665 75.9
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 2.2e-277 958.7 666 76.7
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 5.0e-277 957.6 708 73.4
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 5.0e-277 957.6 672 75.9
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.5e-276 956.1 673 75.8
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 1.2e-275 953.0 664 75.6
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 8.0e-275 950.3 665 76.2
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 1.0e-274 949.9 670 76.4
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 2.0e-273 945.7 718 71.6
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 1.3e-272 943.0 667 75.7
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 2.8e-272 941.8 666 75.8
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 1.4e-271 939.5 666 74.0
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 2.4e-271 938.7 664 74.4
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 2.0e-270 935.6 671 74.2
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 1.1e-268 929.9 667 74.2
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 3.2e-268 928.3 643 74.7
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 5.5e-268 927.5 682 75.5
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 3.1e-263 911.8 656 73.0
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 1.2e-262 909.8 656 72.9
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 2.0e-262 909.1 667 73.6
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 1.3e-261 906.4 667 71.4
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 5.5e-260 901.0 714 68.9
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 3.6e-259 898.3 667 70.6
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 6.1e-259 897.5 669 70.7
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 1.5e-257 892.9 671 71.2
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 3.4e-257 891.7 665 69.9
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 3.4e-257 891.7 665 69.9
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 4.4e-257 891.3 666 71.2
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 6.3e-256 887.5 663 71.2
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 8.3e-256 887.1 665 69.5
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 8.3e-256 887.1 670 70.6
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 7.0e-255 884.0 872 58.5
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 5.0e-253 877.9 696 70.5
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 5.5e-252 874.4 592 77.5
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 1.6e-251 872.8 667 68.8
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 2.1e-251 872.5 668 70.4
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 1.4e-250 869.8 663 70.0
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 1.8e-250 869.4 666 69.7
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 3.0e-250 868.6 670 68.7
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 2.0e-249 865.9 674 68.1
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 4.4e-249 864.8 666 69.2
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 5.7e-249 864.4 672 68.2
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 2.9e-248 862.1 678 67.6
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 1.5e-244 849.7 649 71.8
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.5e-244 849.0 670 68.5
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 1.0e-242 843.6 668 69.2
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 8.3e-240 833.9 665 67.7
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 3.2e-239 832.0 549 78.7
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 2.0e-238 829.3 675 68.4
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 1.3e-232 810.1 690 64.2
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 3.2e-231 805.4 687 64.3
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 3.3e-228 795.4 663 65.9
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 2.1e-222 776.2 676 65.1
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 7.1e-215 751.1 666 63.7
SEGI_19841 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 6.6e-213 744.6 617 65.6
Peaxi162Scf01024g00324 Petunia axillaris HOM05D003924 ORTHO05D005216 6.2e-211 738.0 437 88.8
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 4.9e-192 675.2 378 89.4
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 4.3e-188 662.1 715 52.9
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 2.5e-183 646.4 341 91.5
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 3.6e-174 615.9 400 78.0
Psat1g019320 Pisum sativum HOM05D003924 ORTHO05D005216 3.9e-173 612.5 568 60.9
HPP92_017237 Vanilla planifolia HOM05D003924 ORTHO05D005216 2.9e-160 569.7 310 87.7
Sc10g0000900 Simmondsia chinensis HOM05D003924 ORTHO05D005216 1.8e-146 523.9 279 90.7
HanXRQChr03g0077291 Helianthus annuus HOM05D003924 ORTHO05D005216 5.9e-137 492.3 345 73.0
BcaB06g29071 Brassica carinata HOM05D003924 ORTHO05D005216 9.5e-135 485.0 279 82.8
FAN12G0118 Fragaria x ananassa HOM05D003924 ORTHO05D005216 2.2e-123 447.2 364 69.2
Peaxi162Scf01024g00323 Petunia axillaris HOM05D003924 ORTHO05D005216 1.0e-120 438.3 223 97.3
Aqoxy298s003 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.7e-120 437.6 229 92.6
Oeu055052.1 Olea europaea HOM05D003924 ORTHO05D005216 4.3e-119 433.0 237 88.6
SHI16914 Sapria himalayana HOM05D003924 ORTHO05D005216 3.3e-103 380.2 233 80.7
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 1.7e-99 367.9 372 50.0
C04p67110 Brassica napus HOM05D003924 ORTHO05D005216 2.0e-92 344.4 552 41.3
HanXRQChr09g0240751 Helianthus annuus HOM05D003924 ORTHO05D005216 1.4e-90 338.2 243 72.4
Psat4g181560 Pisum sativum HOM05D003924 ORTHO05D005216 9.6e-87 325.5 181 86.7
Psat0s6336g0040 Pisum sativum HOM05D003924 ORTHO05D005216 3.6e-86 323.6 181 85.1
Psat4g181480 Pisum sativum HOM05D003924 ORTHO05D005216 3.6e-86 323.6 181 85.1
HanXRQChr09g0265821 Helianthus annuus HOM05D003924 ORTHO05D005216 8.4e-83 312.4 174 87.4
SHI16912 Sapria himalayana HOM05D003924 ORTHO05D005216 1.4e-77 295.0 380 52.9
HPP92_017238 Vanilla planifolia HOM05D003924 ORTHO05D005216 1.4e-74 285.0 359 52.4
BolC4t28212H Brassica oleracea HOM05D003924 ORTHO05D005216 3.0e-72 277.3 279 55.9
Os02g0631500 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 9.6e-71 272.3 335 53.4
MCO07G242 Micromonas commoda HOM05D003924 ORTHO05D005216 1.4e-66 258.5 618 32.8
BcaC02g07418 Brassica carinata HOM05D003924 ORTHO05D005216 1.1e-63 248.8 202 64.9
BcaC02g07419 Brassica carinata HOM05D003924 ORTHO05D005216 2.9e-51 207.6 321 41.1
Cpa.g.sc1.272 Carica papaya HOM05D003924 ORTHO05D005216 1.2e-44 185.7 234 52.1
PRCOL_00005861 Prasinoderma coloniale HOM05D003924 ORTHO05D005216 6.1e-41 173.3 738 25.2
Aqoxy298s002 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.7e-38 165.2 163 62.6
Cfa006566 Carpinus fangiana HOM05D003924 ORTHO05D043563 3.2e-34 151.0 83 88.0
Psat7g256680 Pisum sativum HOM05D003924 ORTHO05D005216 1.0e-32 146.0 217 48.8
Lsat_1_v5_gn_4_181660 Lactuca sativa HOM05D003924 ORTHO05D005216 2.0e-31 141.7 112 65.2
AL4G36890 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 4.4e-31 140.6 77 87.0
Lsat_1_v5_gn_6_42681 Lactuca sativa HOM05D003924 ORTHO05D005216 1.8e-29 135.2 88 70.5
Atru.chr12.624 Acer truncatum HOM05D003924 ORTHO05D005216 1.2e-28 132.5 106 71.7
C04p28760 Brassica napus HOM05D003924 ORTHO05D020089 7.2e-26 123.2 87 70.1
Os04g0523200 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 1.2e-25 122.5 113 62.8
VMungo1309G0373 Vigna mungo HOM05D003924 ORTHO05D005216 1.0e-24 119.4 70 87.1
SEGI_20568 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 9.8e-23 112.8 65 89.2
MBI04_g36907_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 2.8e-22 111.3 96 67.7
Lsat_1_v5_gn_2_74800 Lactuca sativa HOM05D000572 ORTHO05D028562 4.9e-22 110.5 65 87.7
C07p14600 Brassica napus HOM05D003924 ORTHO05D020089 7.3e-18 96.7 69 68.1
SHI16913 Sapria himalayana HOM05D000002 ORTHO05D000001 2.8e-17 94.7 77 62.3
BcaC02g10454 Brassica carinata HOM05D003924 ORTHO05D020089 4.7e-17 94.0 57 77.2
BolC4t24411H Brassica oleracea HOM05D003924 ORTHO05D020089 8.0e-17 93.2 57 75.4
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 2.8e-09 68.2 42 73.8
BraA07t28706Z Brassica rapa HOM05D003924 ORTHO05D020089 4.0e-08 64.3 47 57.4
Lsat_1_v5_gn_8_86941 Lactuca sativa HOM05D002786 ORTHO05D003493 5.2e-08 63.9 94 46.8


User provided reference genes

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