Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 0.0e+00 3320.0 1714 100.0
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 0.0e+00 3238.7 1703 98.3
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 0.0e+00 2904.4 1700 88.9
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 2779.6 1703 85.1
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 2573.9 1684 80.8
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 0.0e+00 2546.5 1622 82.2
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 0.0e+00 2241.5 1638 71.1
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 0.0e+00 2215.7 1712 68.9
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 0.0e+00 2210.3 1720 68.4
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 0.0e+00 2151.3 1726 65.7
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 0.0e+00 2136.7 1711 65.5
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 0.0e+00 2132.8 1731 65.2
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 0.0e+00 2127.4 1713 65.6
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 0.0e+00 2120.9 1736 65.5
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 0.0e+00 2117.4 1703 66.2
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 0.0e+00 2110.1 1711 65.9
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 0.0e+00 2107.8 1724 65.4
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 0.0e+00 2105.5 1732 64.2
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 0.0e+00 2100.5 1736 65.1
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 0.0e+00 2088.2 1794 63.2
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 0.0e+00 2086.2 1707 64.9
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 0.0e+00 2085.1 1725 64.3
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2081.6 1734 64.1
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 0.0e+00 2064.3 1710 65.3
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 0.0e+00 2062.7 1809 62.6
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 0.0e+00 2061.2 1724 64.6
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 2053.1 1723 63.3
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 0.0e+00 2046.9 1726 63.4
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2046.6 1734 63.0
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 0.0e+00 2045.0 1731 63.4
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 0.0e+00 2043.5 1725 63.1
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 0.0e+00 2041.9 1680 63.7
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 0.0e+00 2041.9 1734 63.4
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 0.0e+00 2030.8 1693 63.6
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2024.2 1729 62.5
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 2018.8 1736 62.7
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 0.0e+00 2015.0 1732 62.4
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2008.8 1519 70.3
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2006.1 1731 62.3
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 0.0e+00 2001.9 1647 64.4
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 0.0e+00 2000.7 1733 62.0
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2000.7 1733 62.0
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 0.0e+00 1999.6 1732 62.1
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 0.0e+00 1993.4 1734 61.9
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1992.2 1734 61.8
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 1983.4 1703 61.7
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 1968.7 1713 62.0
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 1963.0 1679 61.8
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 1959.5 1732 61.5
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 1952.2 1747 61.1
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 0.0e+00 1951.4 1735 61.4
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 0.0e+00 1947.6 1785 59.2
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1944.5 1733 60.9
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 0.0e+00 1942.2 1733 60.9
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 0.0e+00 1939.5 1698 61.5
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 0.0e+00 1937.9 1774 60.2
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 1934.8 1744 60.6
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 1933.7 1784 58.9
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 0.0e+00 1929.5 1678 61.7
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 1924.1 1734 60.7
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 0.0e+00 1919.8 1749 60.4
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 0.0e+00 1914.0 1732 60.0
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1908.6 1751 59.4
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 0.0e+00 1891.3 1610 61.5
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 0.0e+00 1888.6 1724 59.4
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 0.0e+00 1875.9 1515 65.9
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 0.0e+00 1871.7 1490 65.5
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 0.0e+00 1864.0 1456 67.0
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 0.0e+00 1860.9 1732 58.0
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 0.0e+00 1860.1 1731 58.0
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 0.0e+00 1852.0 1539 64.0
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1851.3 1570 62.8
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1841.2 1696 58.1
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1841.2 1696 58.1
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 0.0e+00 1837.8 1693 58.2
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 0.0e+00 1834.7 1666 58.6
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 0.0e+00 1830.8 1664 59.6
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 0.0e+00 1824.7 1669 60.0
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1820.8 1694 58.0
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1820.8 1694 58.0
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1816.6 1662 58.3
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1813.1 1664 58.4
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1812.7 1667 58.2
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 0.0e+00 1808.5 1743 58.3
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1803.5 1614 59.5
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 0.0e+00 1791.9 1610 59.9
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 0.0e+00 1760.7 1791 54.6
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 0.0e+00 1710.7 1801 54.7
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 1645.9 1351 65.3
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 0.0e+00 1641.7 1620 56.1
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 0.0e+00 1636.3 1535 57.5
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1545.8 1659 52.7
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1530.8 1613 52.8
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1409.8 1316 58.1
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 0.0e+00 1387.1 1598 48.2
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 0.0e+00 1308.5 1627 45.8
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 0.0e+00 1278.1 1689 43.8
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 0.0e+00 1275.0 1686 44.7
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 0.0e+00 1255.4 982 69.5
Oeu007060.1 Olea europaea HOM05D003939 ORTHO05D005979 0.0e+00 1245.7 950 69.1
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 9.5e-304 1047.7 990 59.1
Glyma.19G029100 Glycine max HOM05D003939 ORTHO05D005979 1.0e-302 1044.3 930 59.9
SEGI_00927 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 7.8e-290 1001.5 1077 50.6
CBR_g19320 Chara braunii HOM05D003939 ORTHO05D005979 1.4e-283 980.7 1567 38.9
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 3.9e-281 972.6 915 58.7
PGSC0003DMG400012376 Solanum tuberosum HOM05D003939 ORTHO05D005979 1.4e-262 911.0 479 96.7
CARHR197770 Cardamine hirsuta HOM05D003939 ORTHO05D005979 4.5e-245 852.8 647 67.9
TAR371G1006 Trochodendron aralioides HOM05D003939 ORTHO05D005979 1.0e-217 761.9 720 57.4
CiPaw.03G089600 Carya illinoinensis HOM05D003939 ORTHO05D005979 1.1e-187 662.1 576 61.3
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 2.5e-171 607.8 509 64.2
HPP92_012253 Vanilla planifolia HOM05D003939 ORTHO05D005979 4.2e-166 590.5 804 44.3
Glyma.19G029000 Glycine max HOM05D003939 ORTHO05D005979 1.9e-158 565.1 555 57.3
CSS0005126 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 5.8e-144 516.9 488 60.0
Cpa.g.sc2744.1 Carica papaya HOM05D003939 ORTHO05D005979 9.6e-139 499.6 433 59.8
DCAR_026524 Daucus carota HOM05D003939 ORTHO05D005979 1.7e-135 488.8 562 51.6
CDE04G2810 Ceratophyllum demersum HOM05D003939 ORTHO05D005979 9.3e-134 483.0 478 57.3
SEGI_06328 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 2.3e-132 478.4 504 52.2
HPP92_012298 Vanilla planifolia HOM05D003939 ORTHO05D005979 5.7e-131 473.8 648 42.4
CSS0039149 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.4e-116 426.0 456 54.6
Hma1.2p1_0481F.1_g162010 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 5.2e-108 397.5 370 57.8
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 3.1e-97 361.7 350 55.1
SEGI_04445 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 8.5e-95 353.6 282 63.8
HPP92_012254 Vanilla planifolia HOM05D003939 ORTHO05D005979 3.6e-93 348.2 327 56.6
Cpa.g.sc14.167 Carica papaya HOM05D003939 ORTHO05D005979 1.2e-91 343.2 297 63.0
Prupe.2G279500 Prunus persica HOM05D003939 ORTHO05D005979 1.4e-89 336.3 425 46.8
Gohir.1Z049344 Gossypium hirsutum HOM05D003939 ORTHO05D005979 2.3e-84 318.9 347 51.9
Psat0s5863g0040 Pisum sativum HOM05D003939 ORTHO05D005979 2.3e-79 302.4 306 56.5
Cre06.g278269 Chlamydomonas reinhardtii HOM05D003939 ORTHO05D005979 1.1e-73 283.5 1751 23.0
CAN.G61.23 Capsicum annuum HOM05D003939 ORTHO05D005979 1.2e-48 200.3 117 81.2
BolC9t58997H Brassica oleracea HOM05D003939 ORTHO05D005979 2.8e-45 189.1 120 75.8
Psat0s9359g0040 Pisum sativum HOM05D003939 ORTHO05D005979 1.5e-43 183.3 186 55.4
MCO01G540 Micromonas commoda HOM05D003939 ORTHO05D005979 2.9e-42 179.1 536 27.1
Hma1.2p1_0481F.1_g162030 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 8.4e-42 177.6 218 47.2
CiPaw.03G089700 Carya illinoinensis HOM05D003939 ORTHO05D005979 1.9e-38 166.4 150 55.3
CSS0004390 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 2.4e-36 159.5 253 41.9
HPP92_012255 Vanilla planifolia HOM05D003939 ORTHO05D005979 2.6e-35 156.0 412 32.0
Lju41A4T72 Lonicera japonica HOM05D003939 ORTHO05D005979 1.7e-34 153.3 165 52.1
ClCG07G007370 Citrullus lanatus HOM05D003939 ORTHO05D005979 6.7e-31 141.4 200 43.0
Psat5g278520 Pisum sativum HOM05D003939 ORTHO05D030477 3.1e-28 132.5 98 66.3
MBI06_g03947_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 1.2e-27 130.6 140 46.4
Cpa.g.c43937 Carica papaya HOM05D003939 ORTHO05D005979 6.5e-26 124.8 70 85.7
Psat3g154360 Pisum sativum HOM05D003939 ORTHO05D030477 4.2e-25 122.1 96 63.5
Glyma.01G130950 Glycine max HOM05D003939 ORTHO05D005979 5.5e-25 121.7 101 64.4
Psat3g154320 Pisum sativum HOM05D003939 ORTHO05D030477 2.7e-24 119.4 97 61.9
C09p61570 Brassica napus HOM05D003939 ORTHO05D005979 1.8e-23 116.7 78 71.8
arahy.Tifrunner.gnm1.ann1.HI697U Arachis hypogaea HOM05D001278 ORTHO05D005979 9.6e-22 110.9 121 55.4
MELO3C001621.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.4e-20 107.1 78 66.7
arahy.Tifrunner.gnm1.ann1.BV8AZF Arachis hypogaea HOM05D001278 ORTHO05D004786 1.2e-19 104.0 71 73.2
MELO3C000805.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.4e-17 97.1 91 60.4
TPR.G3973 Trifolium pratense HOM05D003939 ORTHO05D005979 2.5e-17 96.3 174 33.9
TAR629G0495 Trochodendron aralioides HOM05D003939 ORTHO05D005979 9.3e-17 94.4 68 73.5
TAR376G0271 Trochodendron aralioides HOM05D003939 ORTHO05D009412 1.3e-15 90.5 48 91.7
TAR376G0356 Trochodendron aralioides HOM05D003939 ORTHO05D009412 3.9e-15 89.0 48 89.6
MELO3C001721.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.4e-12 80.5 61 63.9
MBI19_g32131_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 1.0e-10 74.3 70 51.4
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 2.2e-10 73.2 109 43.1
Psat5g164760 Pisum sativum HOM05D003939 ORTHO05D005979 6.5e-10 71.6 53 66.0
SEGI_38119 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 1.4e-09 70.5 154 28.6
PSO063G0192 Papaver somniferum HOM05D001862 ORTHO05D005979 4.6e-08 65.5 93 40.9


User provided reference genes

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