Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g031820.4 Solanum lycopersicum HOM05D006350 ORTHO05D007850 0.0e+00 1332.0 646 100.0
Sopen03g005680 Solanum pennellii HOM05D006350 ORTHO05D007850 0.0e+00 1309.7 646 98.3
CAN.G404.6 Capsicum annuum HOM05D006350 ORTHO05D007850 0.0e+00 1213.7 646 91.2
Nitab4.5_0000091g0460 Nicotiana tabacum HOM05D006350 ORTHO05D007850 0.0e+00 1176.8 637 89.0
Nitab4.5_0002613g0020 Nicotiana tabacum HOM05D006350 ORTHO05D007850 0.0e+00 1159.4 636 87.9
Peaxi162Scf00521g00815 Petunia axillaris HOM05D006350 ORTHO05D007850 0.0e+00 1131.7 627 87.6
PGSC0003DMG400024073 Solanum tuberosum HOM05D006350 ORTHO05D007850 1.2e-288 996.1 503 96.6
SGA_v2.0_scaffold114G32022 Striga asiatica HOM05D006350 ORTHO05D007850 9.8e-270 933.3 661 68.2
MSTRG.15966 Avicennia marina HOM05D006350 ORTHO05D007850 2.9e-269 931.8 650 68.8
CSS0026996 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 1.3e-266 922.9 649 68.6
Rhsim02G0112000 Rhododendron simsii HOM05D006350 ORTHO05D007850 1.1e-265 919.8 663 66.7
CSS0007285 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 1.9e-265 919.1 649 68.4
GSVIVG01012630001 Vitis vinifera HOM05D006350 ORTHO05D007850 6.2e-264 914.1 667 66.9
Migut.M01281 Erythranthe guttata HOM05D006350 ORTHO05D007850 2.0e-262 909.1 652 66.4
Ciclev10014587m.g Citrus clementina HOM05D006350 ORTHO05D007850 1.3e-261 906.4 649 68.0
Dinv20017 Davidia involucrata HOM05D006350 ORTHO05D007850 1.4e-260 902.9 632 69.1
Manes.17G035000 Manihot esculenta HOM05D006350 ORTHO05D007850 3.0e-258 895.2 651 67.4
QL93p0073_0722 Quercus lobata HOM05D006350 ORTHO05D007850 3.0e-258 895.2 669 65.3
vmacro15831 Vaccinium macrocarpon HOM05D006350 ORTHO05D007850 6.6e-258 894.0 752 59.3
HanXRQChr16g0504561 Helianthus annuus HOM05D006350 ORTHO05D007850 1.1e-257 893.3 654 67.1
CiPaw.09G087000 Carya illinoinensis HOM05D006350 ORTHO05D007850 3.3e-257 891.7 656 65.9
QL05p075148 Quercus lobata HOM05D006350 ORTHO05D007850 4.3e-257 891.3 669 65.3
TAR629G2651 Trochodendron aralioides HOM05D006350 ORTHO05D007850 5.6e-257 891.0 671 64.1
DCAR_008125 Daucus carota HOM05D006350 ORTHO05D007850 2.1e-256 889.0 671 65.4
MD10G1314700 Malus domestica HOM05D006350 ORTHO05D007850 8.9e-255 883.6 659 65.4
Thecc.06G214100 Theobroma cacao HOM05D006350 ORTHO05D007850 8.9e-255 883.6 647 66.8
ECA248G2377 Erigeron canadensis HOM05D006350 ORTHO05D007850 1.5e-254 882.9 654 66.7
Potri.004G022500 Populus trichocarpa HOM05D006350 ORTHO05D007850 7.6e-254 880.6 646 67.6
RcHm_v2.0_Chr5g0003961 Rosa chinensis HOM05D006350 ORTHO05D007850 2.9e-253 878.6 652 65.5
PGR004G2689 Punica granatum HOM05D006350 ORTHO05D007850 1.9e-252 875.9 654 65.4
Gohir.A10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 5.4e-252 874.4 655 66.9
COL.COLO4_31726 Corchorus olitorius HOM05D006350 ORTHO05D007850 9.3e-252 873.6 649 66.1
THA.LOC104821036 Tarenaya hassleriana HOM05D006350 ORTHO05D007850 3.5e-251 871.7 653 64.3
Gohir.D10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 6.0e-251 870.9 655 66.0
Eucgr.D00813 Eucalyptus grandis HOM05D006350 ORTHO05D007850 7.8e-251 870.5 648 65.0
Gorai.011G016800 Gossypium raimondii HOM05D006350 ORTHO05D007850 7.8e-251 870.5 655 66.3
TWI63G1388 Tripterygium wilfordii HOM05D006350 ORTHO05D007850 2.3e-250 869.0 651 66.4
Prupe.4G026100 Prunus persica HOM05D006350 ORTHO05D007850 5.1e-250 867.8 669 63.2
Glyma.04G064300 Glycine max HOM05D006350 ORTHO05D007850 2.5e-249 865.5 657 65.3
Ca_07431_v3 Cicer arietinum L. HOM05D006350 ORTHO05D007850 5.6e-249 864.4 651 65.0
PSO541G3631 Papaver somniferum HOM05D006350 ORTHO05D007850 1.3e-248 863.2 670 63.7
AUR62012643 Chenopodium quinoa HOM05D006350 ORTHO05D007850 2.1e-248 862.4 671 62.9
PSO675G5568 Papaver somniferum HOM05D006350 ORTHO05D007850 1.4e-247 859.8 669 63.5
Medtr7g050860 Medicago truncatula HOM05D006350 ORTHO05D007850 5.3e-247 857.8 651 65.0
CANSAT80G1390 Cannabis sativa HOM05D006350 ORTHO05D007850 3.4e-246 855.1 669 63.4
Aqoxy4G01993 Aquilegia oxysepala HOM05D006350 ORTHO05D007850 4.4e-246 854.7 644 63.2
Phvul.002G048900 Phaseolus vulgaris HOM05D006350 ORTHO05D007850 9.9e-246 853.6 648 64.2
FAN21G3377 Fragaria x ananassa HOM05D006350 ORTHO05D007850 1.7e-245 852.8 646 65.0
Lj1g0012123 Lotus japonicus HOM05D006350 ORTHO05D007850 1.7e-245 852.8 648 64.5
FvH4_3g02650 Fragaria vesca HOM05D006350 ORTHO05D007850 2.2e-245 852.4 647 64.8
MBI02_g10104_MAGBIO Magnolia biondii HOM05D006350 ORTHO05D007850 3.8e-245 851.7 668 62.4
VMungo1215G2459 Vigna mungo HOM05D006350 ORTHO05D007850 4.9e-245 851.3 653 64.0
arahy.Tifrunner.gnm1.ann1.SC0FBD Arachis hypogaea HOM05D006350 ORTHO05D007850 1.9e-244 849.4 656 63.7
BolC3t13297H Brassica oleracea HOM05D006350 ORTHO05D007850 5.1e-242 841.3 649 62.9
ClCG01G022180 Citrullus lanatus HOM05D006350 ORTHO05D007850 4.3e-241 838.2 648 63.0
Sabra04G0012300 Salix brachista HOM05D006350 ORTHO05D007850 5.6e-241 837.8 702 62.1
Sp6g28900 Schrenkiella parvula HOM05D006350 ORTHO05D007850 1.3e-240 836.6 653 63.4
Thhalv10012972m.g Eutrema salsugineum HOM05D006350 ORTHO05D007850 1.6e-240 836.3 651 63.6
A03p07020 Brassica napus HOM05D006350 ORTHO05D007850 4.8e-240 834.7 648 63.3
C03p08000 Brassica napus HOM05D006350 ORTHO05D007850 3.1e-239 832.0 649 62.7
Atru.chr10.2148 Acer truncatum HOM05D006350 ORTHO05D007850 2.0e-238 829.3 597 67.7
arahy.Tifrunner.gnm1.ann1.QV9JTX Arachis hypogaea HOM05D006350 ORTHO05D007850 2.0e-238 829.3 696 60.1
Aa31LG11G14390 Aethionema arabicum HOM05D006350 ORTHO05D007850 3.4e-238 828.6 651 63.3
AL6G25990 Arabidopsis lyrata HOM05D006350 ORTHO05D007850 7.6e-238 827.4 649 62.2
CsaV3_6G049260 Cucumis sativus L. HOM05D006350 ORTHO05D007850 2.2e-237 825.9 650 61.8
AT5G15170 Arabidopsis thaliana HOM05D006350 ORTHO05D007850 4.2e-236 821.6 651 62.2
Carub.0006s1334 Capsella rubella HOM05D006350 ORTHO05D007850 2.7e-235 818.9 650 62.2
Lj1A1225T76 Lonicera japonica HOM05D006350 ORTHO05D007850 1.8e-234 816.2 660 61.7
Duzib160G0024 Durio zibethinus HOM05D006350 ORTHO05D007850 3.3e-233 812.0 647 63.5
Zm00001eb323120 Zea mays HOM05D006350 ORTHO05D007850 9.0e-231 803.9 669 57.5
TPR.G10193 Trifolium pratense HOM05D006350 ORTHO05D007850 2.9e-229 798.9 604 65.2
Os07g0530100 Oryza sativa ssp. japonica HOM05D006350 ORTHO05D007850 1.4e-228 796.6 662 57.7
Lalb_Chr09g0319631 Lupinus albus HOM05D006350 ORTHO05D007850 1.9e-228 796.2 651 60.2
BcaB01g05074 Brassica carinata HOM05D006350 ORTHO05D007850 3.9e-226 788.5 650 60.3
EL10Ac8g19892 Beta vulgaris HOM05D006350 ORTHO05D007850 1.1e-225 786.9 673 59.9
Sc05g0008900 Simmondsia chinensis HOM05D006350 ORTHO05D007850 7.4e-225 784.3 483 76.0
CARHR198140 Cardamine hirsuta HOM05D006350 ORTHO05D007850 1.4e-220 770.0 592 64.5
Hund23514 Selenicereus undatus HOM05D006350 ORTHO05D007850 1.0e-218 763.8 642 61.5
FAN25G1413 Fragaria x ananassa HOM05D006350 ORTHO05D007850 1.7e-213 746.5 648 59.3
Psat3g152760 Pisum sativum HOM05D006350 ORTHO05D007850 1.4e-207 726.9 527 66.8
Sed0019871 Sechium edule HOM05D006350 ORTHO05D007850 2.4e-207 726.1 482 69.1
MELO3C007370.2 Cucumis melo HOM05D006350 ORTHO05D007850 3.8e-205 718.8 564 62.6
CDE05G1739 Ceratophyllum demersum HOM05D006350 ORTHO05D007850 7.2e-204 714.5 618 57.8
Cc02_g11700 Coffea canephora HOM05D006350 ORTHO05D007850 2.8e-200 702.6 417 77.9
SEGI_36047 Sequoiadendron giganteum HOM05D006350 ORTHO05D007850 2.7e-195 686.0 636 55.5
unitig_748.g7139 Utricularia gibba HOM05D006350 ORTHO05D007850 2.0e-193 679.9 515 63.7
ATR0109G008 Amborella trichopoda HOM05D006350 ORTHO05D007850 9.1e-191 671.0 572 57.0
Haze_08403 Corylus avellana HOM05D006350 ORTHO05D007850 9.1e-191 671.0 524 62.6
AUR62022012 Chenopodium quinoa HOM05D006350 ORTHO05D007850 4.7e-187 658.7 669 51.3
Lsat_1_v5_gn_1_127601 Lactuca sativa HOM05D006350 ORTHO05D000125 4.7e-187 658.7 524 62.8
Cpa.g.sc198.9 Carica papaya HOM05D006350 ORTHO05D007850 1.4e-175 620.5 644 52.8
Mapoly0129s0047 Marchantia polymorpha HOM05D006350 ORTHO05D007850 9.5e-172 607.8 692 48.0
SMO117G0269 Selaginella moellendorffii HOM05D006350 ORTHO05D007850 7.8e-166 588.2 468 60.5
Oeu051224.2 Olea europaea HOM05D006350 ORTHO05D007850 3.0e-165 586.3 679 48.9
Dinv17832 Davidia involucrata HOM05D006350 ORTHO05D007850 2.8e-163 579.7 421 67.7
Pp3c10_12100 Physcomitrium patens HOM05D006350 ORTHO05D007850 1.9e-156 557.0 612 48.5
Hund21368 Selenicereus undatus HOM05D006350 ORTHO05D007850 1.6e-150 537.3 329 74.5
Nn1g03636 Nelumbo nucifera HOM05D006350 ORTHO05D007850 1.4e-130 471.1 650 42.9
Hund21371 Selenicereus undatus HOM05D006350 ORTHO05D007850 9.6e-116 421.8 289 68.2
Eucgr.L01729 Eucalyptus grandis HOM05D006350 ORTHO05D007850 6.1e-94 349.4 458 44.1
MBI04_g30799_MAGBIO Magnolia biondii HOM05D006350 ORTHO05D007850 1.2e-89 335.1 392 48.0
HPP92_017615 Vanilla planifolia HOM05D006350 ORTHO05D007850 6.7e-85 319.3 203 71.4
MCO12G349 Micromonas commoda HOM05D006350 ORTHO05D007850 3.5e-81 307.0 486 36.8
Dinv17831 Davidia involucrata HOM05D006350 ORTHO05D007850 5.0e-80 303.1 189 74.6
PRCOL_00001871 Prasinoderma coloniale HOM05D006350 ORTHO05D007850 2.7e-73 280.8 470 36.0
VMungo1383G3417 Vigna mungo HOM05D006350 ORTHO05D007850 3.6e-70 270.4 271 53.1
Cc02_g11710 Coffea canephora HOM05D006350 ORTHO05D007850 2.0e-68 264.6 240 60.0
Cre01.g053200 Chlamydomonas reinhardtii HOM05D006350 ORTHO05D007850 8.3e-59 232.6 509 33.0
SMO172G0198 Selaginella moellendorffii HOM05D006350 ORTHO05D007850 2.4e-58 231.1 220 55.5
VMungo0251G1161 Vigna mungo HOM05D006350 ORTHO05D007850 5.0e-56 223.4 147 69.4
HPP92_017616 Vanilla planifolia HOM05D006350 ORTHO05D007850 5.8e-44 183.3 266 42.1
SMO198G0039 Selaginella moellendorffii HOM05D006350 ORTHO05D007850 5.6e-31 140.2 148 48.6
CBR_g28581 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-28 131.0 133 51.1
Nn1g00065 Nelumbo nucifera HOM05D006350 ORTHO05D007850 3.4e-28 131.0 156 43.6
unitig_748.g7138 Utricularia gibba HOM05D006350 ORTHO05D007850 2.9e-27 127.9 103 57.3
Sc05g0008890 Simmondsia chinensis HOM05D006350 ORTHO05D007850 3.8e-27 127.5 113 58.4
HPP92_017614 Vanilla planifolia HOM05D006350 ORTHO05D007850 2.4e-18 98.2 82 54.9
Cfa024753 Carpinus fangiana HOM05D006350 ORTHO05D007850 4.2e-18 97.4 594 20.7
C03p17100 Brassica napus HOM05D006350 ORTHO05D007850 1.2e-12 79.3 66 59.1
BolC3t14124H Brassica oleracea HOM05D006350 ORTHO05D007850 1.2e-12 79.3 66 59.1
Nn1g07028 Nelumbo nucifera HOM05D006350 ORTHO05D007850 1.2e-12 79.3 69 52.2
ATR0582G190 Amborella trichopoda HOM05D007034 ORTHO05D008665 1.5e-12 79.0 209 26.3
Nn1g07027 Nelumbo nucifera HOM05D006350 ORTHO05D007850 7.6e-12 76.6 62 53.2
PSO017G4759 Papaver somniferum HOM05D007034 ORTHO05D008665 1.4e-10 72.4 263 25.1
Ah.15g089920 Amaranthus hybridus HOM05D007034 ORTHO05D008665 1.9e-10 72.0 213 25.8
EL10Ac7g17117 Beta vulgaris HOM05D007034 ORTHO05D008665 1.9e-10 72.0 199 27.1
PSO017G2510 Papaver somniferum HOM05D007034 ORTHO05D008665 1.9e-10 72.0 215 25.6
Pp3c20_13830 Physcomitrium patens HOM05D006350 ORTHO05D007850 1.9e-10 72.0 101 43.6
Prupe.5G138100 Prunus persica HOM05D007034 ORTHO05D008665 1.9e-10 72.0 239 25.5
HPP92_006434 Vanilla planifolia HOM05D007034 ORTHO05D008665 1.9e-10 72.0 209 27.8
AUR62029782 Chenopodium quinoa HOM05D007034 ORTHO05D008665 4.2e-10 70.9 223 26.5
Sc10g0005150 Simmondsia chinensis HOM05D007034 ORTHO05D008665 5.4e-10 70.5 228 24.6
MD06G1128300 Malus domestica HOM05D007034 ORTHO05D008665 7.1e-10 70.1 198 26.3
GSVIVG01014061001 Vitis vinifera HOM05D007034 ORTHO05D008665 9.3e-10 69.7 203 24.6
QL10p035731 Quercus lobata HOM05D007034 ORTHO05D008665 3.5e-09 67.8 198 25.3
HanXRQChr05g0154511 Helianthus annuus HOM05D007034 ORTHO05D008665 4.6e-09 67.4 198 27.8
MBI11_g45190_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 6.0e-09 67.0 203 26.6
vmacro19093 Vaccinium macrocarpon HOM05D007034 ORTHO05D008665 6.0e-09 67.0 204 24.5
Ciclev10030559m.g Citrus clementina HOM05D007034 ORTHO05D008665 7.9e-09 66.6 198 25.3
THA.LOC104818293 Tarenaya hassleriana HOM05D007034 ORTHO05D008665 7.9e-09 66.6 322 24.2
AagrBONN_evm.TU.Sc2ySwM_340.151 Anthoceros agrestis HOM05D007034 ORTHO05D008665 1.0e-08 66.2 214 25.7
FAN08G2641 Fragaria x ananassa HOM05D007034 ORTHO05D008665 1.0e-08 66.2 198 24.2
arahy.Tifrunner.gnm1.ann1.FYEN8G Arachis hypogaea HOM05D007034 ORTHO05D008665 1.3e-08 65.9 196 25.0
Cc04_g05570 Coffea canephora HOM05D007034 ORTHO05D008665 1.8e-08 65.5 201 24.9
Nn3g16191 Nelumbo nucifera HOM05D007034 ORTHO05D008665 1.8e-08 65.5 230 26.1
Thecc.03G143600 Theobroma cacao HOM05D007034 ORTHO05D008665 1.8e-08 65.5 198 23.7
TWI23G0512 Tripterygium wilfordii HOM05D007034 ORTHO05D008665 1.8e-08 65.5 198 24.7
Aqoxy5G02954 Aquilegia oxysepala HOM05D007034 ORTHO05D008665 3.0e-08 64.7 191 24.6
Ca_16833_v3 Cicer arietinum L. HOM05D007034 ORTHO05D008665 3.0e-08 64.7 389 24.4
FvH4_5g10030 Fragaria vesca HOM05D007034 ORTHO05D008665 3.0e-08 64.7 198 24.2
AT5G07400 Arabidopsis thaliana HOM05D007034 ORTHO05D008665 3.9e-08 64.3 192 25.5
arahy.Tifrunner.gnm1.ann1.XWK03B Arachis hypogaea HOM05D007034 ORTHO05D008665 3.9e-08 64.3 196 24.5
RcHm_v2.0_Chr7g0188231 Rosa chinensis HOM05D007034 ORTHO05D008665 3.9e-08 64.3 201 24.9
Dinv13693 Davidia involucrata HOM05D007034 ORTHO05D008665 5.1e-08 63.9 199 24.6
FAN18G0345 Fragaria x ananassa HOM05D007034 ORTHO05D008665 5.1e-08 63.9 197 24.4
Lsat_1_v5_gn_5_9280 Lactuca sativa HOM05D007034 ORTHO05D008665 5.1e-08 63.9 192 25.5
Actinidia18277 Actinidia chinensis HOM05D007034 ORTHO05D008665 6.7e-08 63.5 205 22.9
Potri.012G111800 Populus trichocarpa HOM05D007034 ORTHO05D008665 6.7e-08 63.5 125 32.8
Sp6g35470 Schrenkiella parvula HOM05D007034 ORTHO05D008665 1.5e-07 62.4 318 22.6
Cfa024022 Carpinus fangiana HOM05D006350 ORTHO05D007850 3.3e-07 61.2 238 23.9
Lj5C84G9 Lonicera japonica HOM05D007034 ORTHO05D008665 3.3e-07 61.2 205 24.4
Os04g0403400 Oryza sativa ssp. japonica HOM05D007034 ORTHO05D008665 3.3e-07 61.2 193 24.9
Aa31LG3G18970 Aethionema arabicum HOM05D007034 ORTHO05D008665 4.3e-07 60.8 201 23.9
Oeu012864.4 Olea europaea HOM05D007034 ORTHO05D008665 4.3e-07 60.8 243 25.9
Rhsim08G0200400 Rhododendron simsii HOM05D007034 ORTHO05D008665 4.3e-07 60.8 200 24.5
BcaC03g13189 Brassica carinata HOM05D007034 ORTHO05D008665 5.6e-07 60.5 309 23.6
BolC2t06271H Brassica oleracea HOM05D007034 ORTHO05D008665 5.6e-07 60.5 309 23.6
Thhalv10012509m.g Eutrema salsugineum HOM05D007034 ORTHO05D008665 5.6e-07 60.5 310 22.9
Glyma.08G005800 Glycine max HOM05D007034 ORTHO05D008665 5.6e-07 60.5 234 22.2
PGR042G1727 Punica granatum HOM05D007034 ORTHO05D008665 5.6e-07 60.5 195 26.7
Sabra12G0081400 Salix brachista HOM05D007034 ORTHO05D008665 5.6e-07 60.5 125 31.2
CANSAT56G2345 Cannabis sativa HOM05D007034 ORTHO05D008665 7.4e-07 60.1 198 25.8
CAN.G1008.36 Capsicum annuum HOM05D007034 ORTHO05D008665 7.4e-07 60.1 336 22.6
Psat7g040600 Pisum sativum HOM05D007034 ORTHO05D008665 7.4e-07 60.1 294 23.8
C02p03100 Brassica napus HOM05D007034 ORTHO05D008665 9.6e-07 59.7 309 23.9
Migut.I00651 Erythranthe guttata HOM05D007034 ORTHO05D008665 9.6e-07 59.7 207 23.7
Manes.06G128800 Manihot esculenta HOM05D007034 ORTHO05D008665 9.6e-07 59.7 119 31.9
SalBow7G3686 Salvia bowleyana HOM05D007034 ORTHO05D008665 9.6e-07 59.7 224 22.8
DCAR_001582 Daucus carota HOM05D006350 ORTHO05D007850 1.3e-06 59.3 86 34.9
Zm00001eb084530 Zea mays HOM05D007034 ORTHO05D008665 1.3e-06 59.3 203 25.1
Medtr8g095490 Medicago truncatula HOM05D007034 ORTHO05D008665 1.6e-06 58.9 154 26.6
arahy.Tifrunner.gnm1.ann1.PQF71L Arachis hypogaea HOM05D004293 ORTHO05D007850 2.8e-06 58.2 51 52.9
Duzib205G0091 Durio zibethinus HOM05D007034 ORTHO05D008665 2.8e-06 58.2 126 27.0
Eucgr.G00023 Eucalyptus grandis HOM05D007034 ORTHO05D008665 2.8e-06 58.2 226 24.8
AL6G17700 Arabidopsis lyrata HOM05D007034 ORTHO05D008665 8.1e-06 56.6 117 28.2
TPR.G12786 Trifolium pratense HOM05D007034 ORTHO05D008665 8.1e-06 56.6 159 24.5


User provided reference genes

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