Gene: Sopen03g005680
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen03g005680
- Transcript Identifier Sopen03g005680.1
- Gene Type Coding gene
- Location Spenn-ch03 : 4481743-4492804 : negative
Gene Family Information
- ID HOM05D006350
- #Genes/#Species 125/92
- Phylogenetic origin
- ID ORTHO05D007850
- #Genes/#Species 126/91
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen03g005680.1
Descriptions
- Description tyrosyl-DNA phosphodiesterase-related | FUNCTIONS IN: 3-tyrosyl-DNA phosphodiesterase activity | INVOLVED IN: DNA repair | LOCATED IN: nucleus | EXPRESSED IN: 15 plant structures | EXPRESSED DURING: 6 growth stages | CONTAINS InterPro DOMAIN/s: Tyrosyl-DNA phosphodiesterase , SMAD/FHA domain | BEST Arabidopsis thaliana protein match is: forkhead-associated domain-containing protein / FHA domain-containing protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006281 | IEA | InterPro | DNA repair |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0008081 | IEA | InterPro | phosphoric diester hydrolase activity | |
| GO:0017005 | ISO | PLAZA Integrative Orthology | 3'-tyrosyl-DNA phosphodiesterase activity | AT5G15170 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | InterPro | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 14.10.1 | DNA damage response.DNA-protein crosslink (DPC) repair.tyrosyl-DNA phosphodiesterase (TDP1) |