Gene: Os04g0403400

General Information

Structural Information

  • Species Oryza sativa ssp. japonica
  • Gene Identifier Os04g0403400
  • Transcript Identifier Os04t0403400-01
  • Gene Type Coding gene
  • Location chr04 : 20009939-20015303 : positive

Gene Family Information

  • ID HOM05D007034
  • #Genes/#Species 114/84
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Os04t0403400-01
  • MSU-ID LOC_Os04g33050.1
  • uniprot Q0JDH5

Descriptions

  • Description Tyrosyl-DNA phosphodiesterase family protein.
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006281
IEA
InterProDNA repair
GO:0000012
IBA
GOA Databasesingle strand break repair
GO:0006302
IBA
GOA Databasedouble-strand break repair
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003697
IBA
GOA Databasesingle-stranded DNA binding
GO:0005515
ISO
PLAZA Homology (enrichment)protein binding HOM05D007034
GO:0008081
IEA
GOA Databasephosphoric diester hydrolase activity
GO:0008081
IEA
InterProphosphoric diester hydrolase activity
GO:0016818
IEA
GOA Databasehydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0016818
IEA
InterProhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0017005
IBA
GOA Database3'-tyrosyl-DNA phosphodiesterase activity
GO:0003690
IBA
GOA Databasedouble-stranded DNA binding
GO:0004518
IEA
GOA Databasenuclease activity
GO:0004527
IEA
GOA Databaseexonuclease activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
IEA
GOA Databasenucleus
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR014905 HIRAN domain
IPR010347 Tyrosyl-DNA phosphodiesterase I
Mapman id Description
35.1 not assigned.annotated