Gene: Lsat_1_v5_gn_1_127601

General Information

Structural Information

  • Species Lactuca sativa
  • Gene Identifier Lsat_1_v5_gn_1_127601
  • Transcript Identifier Lsat_1_v5_gn_1_127601.1
  • Gene Type Coding gene
  • Location Lsat_1_v8_lg_1 : 201400201-201412602 : negative

Gene Family Information

  • ID HOM05D006350
  • #Genes/#Species 125/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Lsat_1_v5_gn_1_127601.v5
  • pacid 38946502

Descriptions

  • Description PTHR10666:SF150 - POLYUBIQUITIN 3
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0007568
ISO
PLAZA Integrative Orthologyaging AT4G05320
GO:0016567
ISO
PLAZA Integrative Orthologyprotein ubiquitination AT3G52590
GO:0010224
ISO
PLAZA Integrative Orthologyresponse to UV-B AT5G03240
GO:0009733
ISO
PLAZA Integrative Orthologyresponse to auxin AT1G31340
GO:0006511
ISO
PLAZA Integrative Orthologyubiquitin-dependent protein catabolic process AT5G20620
GO:0009751
ISO
PLAZA Integrative Orthologyresponse to salicylic acid AT4G05320
GO:0045116
ISO
PLAZA Integrative Orthologyprotein neddylation AT1G31340
GO:0006464
ISO
PLAZA Integrative Orthologycellular protein modification process AT4G05320
GO:0009693
ISO
PLAZA Integrative Orthologyethylene biosynthetic process AT1G31340
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT1G31340
GO:0006281
IEA
InterProDNA repair

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0017005
ISO
PLAZA Integrative Orthology3'-tyrosyl-DNA phosphodiesterase activity AT5G15170
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT2G36170
GO:0003735
ISO
PLAZA Integrative Orthologystructural constituent of ribosome AT2G36170
GO:0005515
IEA
InterProprotein binding
GO:0008081
IEA
InterProphosphoric diester hydrolase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G31340
GO:0005618
ISO
PLAZA Integrative Orthologycell wall AT3G09790
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT1G23410
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT1G31340
GO:0005622
ISO
PLAZA Integrative Orthologyintracellular anatomical structure AT3G09790
GO:0005773
ISO
PLAZA Integrative Orthologyvacuole AT3G09790
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT2G36170
GO:0022625
ISO
PLAZA Integrative Orthologycytosolic large ribosomal subunit AT2G36170
GO:0005794
ISO
PLAZA Integrative OrthologyGolgi apparatus AT2G47110
GO:0022627
ISO
PLAZA Integrative Orthologycytosolic small ribosomal subunit AT2G47110
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR019956 Ubiquitin domain
IPR029071 Ubiquitin-like domain superfamily
IPR000626 Ubiquitin-like domain
IPR000253 Forkhead-associated (FHA) domain
IPR008984 SMAD/FHA domain superfamily
IPR010347 Tyrosyl-DNA phosphodiesterase I
Mapman id Description
14.10.1 DNA damage response.DNA-protein crosslink (DPC) repair.tyrosyl-DNA phosphodiesterase (TDP1)
19.2.2.1.1 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-fold protein (UBQ)