Gene: Solyc03g031820.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc03g031820.4
  • Transcript Identifier Solyc03g031820.4.1
  • Gene Type Coding gene
  • Location SL4.0ch03 : 4199325-4210148 : negative

Gene Family Information

  • ID HOM05D006350
  • #Genes/#Species 125/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc03g031820.4.1
  • uniprot A0A3Q7FFF8
  • gene_id Solyc03g031820

Descriptions

  • Description Tyrosyl-DNA phosphodiesterase 1 (AHRD V3.3 *** A0A1J3DZX5_NOCCA)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000012
IBA
GOA Databasesingle strand break repair
GO:0006302
IBA
GOA Databasedouble-strand break repair
GO:0006413
IEA
GOA Databasetranslational initiation
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006281
IEA
InterProDNA repair
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004518
IEA
GOA Databasenuclease activity
GO:0017005
IBA
GOA Database3'-tyrosyl-DNA phosphodiesterase activity
GO:0003690
IBA
GOA Databasedouble-stranded DNA binding
GO:0003697
IBA
GOA Databasesingle-stranded DNA binding
GO:0008081
IEA
GOA Databasephosphoric diester hydrolase activity
GO:0008081
IEA
InterProphosphoric diester hydrolase activity
GO:0003743
IEA
GOA Databasetranslation initiation factor activity
GO:0005515
IEA
InterProprotein binding
GO:0004527
IEA
GOA Databaseexonuclease activity
GO:0016787
IEA
GOA Databasehydrolase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
IEA
GOA Databasenucleus
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR008984 SMAD/FHA domain superfamily
IPR000253 Forkhead-associated (FHA) domain
IPR010347 Tyrosyl-DNA phosphodiesterase I
Mapman id Description
14.10.1 DNA damage response.DNA-protein crosslink (DPC) repair.tyrosyl-DNA phosphodiesterase (TDP1)