Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g103560.3 Solanum lycopersicum HOM05D007027 ORTHO05D008765 2.4e-226 788.5 390 100.0
Sopen01g045910 Solanum pennellii HOM05D007027 ORTHO05D008765 1.0e-221 773.1 390 98.2
PGSC0003DMG400024892 Solanum tuberosum HOM05D007027 ORTHO05D008765 1.7e-216 755.7 390 96.2
CAN.G855.3 Capsicum annuum HOM05D007027 ORTHO05D008765 8.8e-197 690.3 389 87.7
Nitab4.5_0000787g0210 Nicotiana tabacum HOM05D007027 ORTHO05D008765 4.2e-191 671.4 386 85.8
Nitab4.5_0004106g0030 Nicotiana tabacum HOM05D007027 ORTHO05D008765 1.4e-189 666.4 387 84.8
CSS0028981 Camellia sinensis var. sinensis HOM05D007027 ORTHO05D008765 1.2e-156 557.0 384 71.9
Dinv07482 Davidia involucrata HOM05D007027 ORTHO05D008765 5.6e-151 538.1 384 70.6
GSVIVG01023249001 Vitis vinifera HOM05D007027 ORTHO05D008765 1.6e-150 536.6 373 70.8
Cc02_g23170 Coffea canephora HOM05D007027 ORTHO05D008765 1.1e-146 523.9 378 70.9
CiPaw.05G004800 Carya illinoinensis HOM05D007027 ORTHO05D008765 3.2e-146 522.3 377 71.1
Oeu064602.3 Olea europaea HOM05D007027 ORTHO05D008765 4.1e-146 521.9 429 64.3
SGA_v2.0_scaffold304G47919 Striga asiatica HOM05D007027 ORTHO05D008765 2.7e-145 519.2 397 68.0
Cfa004487 Carpinus fangiana HOM05D007027 ORTHO05D008765 1.3e-144 516.9 377 68.2
Manes.07G024000 Manihot esculenta HOM05D007027 ORTHO05D008765 3.0e-144 515.8 381 70.3
Duzib132G0056 Durio zibethinus HOM05D007027 ORTHO05D008765 1.9e-143 513.1 374 68.2
QL02p100436 Quercus lobata HOM05D007027 ORTHO05D008765 4.3e-143 511.9 374 69.0
THA.LOC104816809 Tarenaya hassleriana HOM05D007027 ORTHO05D008765 7.3e-143 511.1 378 68.3
CiPaw.06G173600 Carya illinoinensis HOM05D007027 ORTHO05D008765 1.1e-141 507.3 376 67.0
FvH4_3g33250 Fragaria vesca HOM05D007027 ORTHO05D008765 1.1e-141 507.3 374 67.9
MD08G1241400 Malus domestica HOM05D007027 ORTHO05D008765 1.1e-141 507.3 378 67.7
Gohir.D01G174800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 1.8e-141 506.5 370 68.9
MD15G1435400 Malus domestica HOM05D007027 ORTHO05D008765 1.8e-141 506.5 378 68.5
RcHm_v2.0_Chr5g0060601 Rosa chinensis HOM05D007027 ORTHO05D008765 4.0e-141 505.4 374 69.3
Gorai.002G216900 Gossypium raimondii HOM05D007027 ORTHO05D008765 8.9e-141 504.2 359 69.6
FAN25G1584 Fragaria x ananassa HOM05D007027 ORTHO05D008765 1.2e-140 503.8 374 67.6
SalBow7G1849 Salvia bowleyana HOM05D007027 ORTHO05D008765 1.2e-140 503.8 368 67.9
CsaV3_5G029790 Cucumis sativus L. HOM05D007027 ORTHO05D008765 2.6e-140 502.7 377 67.1
Migut.B00775 Erythranthe guttata HOM05D007027 ORTHO05D008765 2.6e-140 502.7 373 70.2
Gohir.A01G183800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 2.6e-140 502.7 359 69.4
Nn5g27423 Nelumbo nucifera HOM05D007027 ORTHO05D008765 7.5e-140 501.1 368 67.4
FAN16G3401 Fragaria x ananassa HOM05D007027 ORTHO05D008765 9.8e-140 500.7 374 66.8
HanXRQChr09g0249131 Helianthus annuus HOM05D007027 ORTHO05D008765 1.7e-139 500.0 388 67.8
PGR142G1179 Punica granatum HOM05D007027 ORTHO05D008765 2.2e-139 499.6 373 67.0
Rhsim11G0122600 Rhododendron simsii HOM05D007027 ORTHO05D008765 6.4e-139 498.0 400 65.5
Actinidia00176 Actinidia chinensis HOM05D007027 ORTHO05D008765 1.1e-138 497.3 346 72.5
DCAR_006671 Daucus carota HOM05D007027 ORTHO05D008765 4.1e-138 495.4 383 65.8
TAR381G1092 Trochodendron aralioides HOM05D007027 ORTHO05D008765 4.1e-138 495.4 372 67.5
Lj5C266T4 Lonicera japonica HOM05D007027 ORTHO05D008765 5.4e-138 495.0 387 68.0
MELO3C011820.2 Cucumis melo HOM05D007027 ORTHO05D008765 9.2e-138 494.2 394 64.5
CANSAT54G3047 Cannabis sativa HOM05D007027 ORTHO05D008765 3.0e-136 489.2 381 64.6
Cpa.g.sc113.45 Carica papaya HOM05D007027 ORTHO05D008765 3.9e-136 488.8 376 66.8
FAN11G0675 Fragaria x ananassa HOM05D007027 ORTHO05D008765 3.9e-136 488.8 410 62.0
Hund15459 Selenicereus undatus HOM05D007027 ORTHO05D008765 1.5e-132 476.9 369 66.1
MBI03_g18680_MAGBIO Magnolia biondii HOM05D007027 ORTHO05D008765 2.0e-132 476.5 394 63.2
Glyma.12G167000 Glycine max HOM05D007027 ORTHO05D008765 3.4e-132 475.7 378 64.0
Ca_00043_v3 Cicer arietinum L. HOM05D007027 ORTHO05D008765 9.9e-132 474.2 363 66.7
Atru.chr6.497 Acer truncatum HOM05D007027 ORTHO05D008765 1.3e-131 473.8 374 65.0
AT1G09800 Arabidopsis thaliana HOM05D007027 ORTHO05D008765 2.9e-131 472.6 377 64.2
VMungo0540G1081 Vigna mungo HOM05D007027 ORTHO05D008765 8.4e-131 471.1 371 64.7
Psat1g222360 Pisum sativum HOM05D007027 ORTHO05D008765 2.4e-130 469.5 362 64.6
Potri.003G008500 Populus trichocarpa HOM05D007027 ORTHO05D008765 2.4e-130 469.5 355 67.9
BcaC05g24848 Brassica carinata HOM05D007027 ORTHO05D008765 3.2e-130 469.2 376 64.4
Haze_10044 Corylus avellana HOM05D007027 ORTHO05D008765 4.1e-130 468.8 480 53.1
Carub.0001s0916 Capsella rubella HOM05D007027 ORTHO05D008765 1.2e-129 467.2 377 64.5
Thhalv10007981m.g Eutrema salsugineum HOM05D007027 ORTHO05D008765 1.6e-129 466.8 376 65.2
CARHR009790 Cardamine hirsuta HOM05D007027 ORTHO05D008765 2.1e-129 466.5 381 64.0
ECA233G3768 Erigeron canadensis HOM05D007027 ORTHO05D008765 2.1e-129 466.5 374 65.8
Sp1g08410 Schrenkiella parvula HOM05D007027 ORTHO05D008765 4.6e-129 465.3 382 63.4
Glyma.16G003100 Glycine max HOM05D007027 ORTHO05D008765 6.0e-129 464.9 380 63.4
TPR.G2122 Trifolium pratense HOM05D007027 ORTHO05D008765 6.0e-129 464.9 373 63.0
C08p49260 Brassica napus HOM05D007027 ORTHO05D008765 7.8e-129 464.5 325 69.5
BolC8t52461H Brassica oleracea HOM05D007027 ORTHO05D008765 1.0e-128 464.2 325 69.5
Aqoxy3G00475 Aquilegia oxysepala HOM05D007027 ORTHO05D008765 3.0e-128 462.6 361 65.7
unitig_699.g19848 Utricularia gibba HOM05D007027 ORTHO05D008765 5.1e-128 461.8 384 62.8
Prupe.1G579000 Prunus persica HOM05D007027 ORTHO05D008765 6.6e-128 461.5 376 65.2
Os12g0194800 Oryza sativa ssp. japonica HOM05D007027 ORTHO05D008765 8.6e-128 461.1 361 65.1
vmacro01711 Vaccinium macrocarpon HOM05D007027 ORTHO05D008765 1.1e-127 460.7 432 58.3
A09p65310 Brassica napus HOM05D007027 ORTHO05D008765 2.5e-127 459.5 325 69.2
ATR1136G089 Amborella trichopoda HOM05D007027 ORTHO05D008765 3.3e-127 459.1 359 64.9
FAN21G1550 Fragaria x ananassa HOM05D007027 ORTHO05D008765 9.6e-127 457.6 374 63.6
AL1G20380 Arabidopsis lyrata HOM05D007027 ORTHO05D008765 3.6e-126 455.7 408 59.6
TWI23G0132 Tripterygium wilfordii HOM05D007027 ORTHO05D008765 6.2e-126 454.9 383 62.1
Sabra03G0004200 Salix brachista HOM05D007027 ORTHO05D008765 1.1e-125 454.1 382 61.8
EL10Ac6g14111 Beta vulgaris HOM05D007027 ORTHO05D008765 3.1e-125 452.6 370 64.3
BolC5t29540H Brassica oleracea HOM05D007027 ORTHO05D008765 3.1e-125 452.6 362 64.9
Thecc.02G018500 Theobroma cacao HOM05D007027 ORTHO05D008765 2.0e-124 449.9 381 62.5
C05p07890 Brassica napus HOM05D007027 ORTHO05D008765 7.6e-124 448.0 360 64.7
A06p06480 Brassica napus HOM05D007027 ORTHO05D008765 3.8e-123 445.7 361 62.9
Medtr2g005830 Medicago truncatula HOM05D007027 ORTHO05D008765 8.4e-123 444.5 371 60.1
BraA06t23859Z Brassica rapa HOM05D007027 ORTHO05D008765 1.9e-122 443.4 361 62.6
arahy.Tifrunner.gnm1.ann1.BAUB6M Arachis hypogaea HOM05D007027 ORTHO05D008765 2.4e-122 443.0 369 62.3
arahy.Tifrunner.gnm1.ann1.3G44QY Arachis hypogaea HOM05D007027 ORTHO05D008765 7.1e-122 441.4 369 62.3
Lalb_Chr20g0123691 Lupinus albus HOM05D007027 ORTHO05D008765 7.1e-122 441.4 324 67.0
Ciclev10001491m.g Citrus clementina HOM05D007027 ORTHO05D008765 9.3e-122 441.0 372 61.8
COL.COLO4_17723 Corchorus olitorius HOM05D007027 ORTHO05D008765 3.5e-121 439.1 330 67.6
Zm00001eb138750 Zea mays HOM05D007027 ORTHO05D008765 1.5e-119 433.7 367 62.9
Lj6g0019688 Lotus japonicus HOM05D007027 ORTHO05D008765 4.0e-117 425.6 369 59.6
Lj6g0023928 Lotus japonicus HOM05D007027 ORTHO05D008765 4.0e-117 425.6 369 59.6
PSO017G0894 Papaver somniferum HOM05D007027 ORTHO05D008765 4.0e-117 425.6 331 62.5
PSO170G1275 Papaver somniferum HOM05D007027 ORTHO05D008765 4.0e-117 425.6 331 62.5
BcaC07g41859 Brassica carinata HOM05D007027 ORTHO05D008765 1.1e-114 417.5 335 62.7
Eucgr.I02764 Eucalyptus grandis HOM05D007027 ORTHO05D008765 1.1e-111 407.5 332 62.7
AUR62043952 Chenopodium quinoa HOM05D007027 ORTHO05D008765 5.8e-108 395.2 324 63.6
Sed0027668 Sechium edule HOM05D007027 ORTHO05D008765 1.8e-104 383.6 325 61.2
Pp3c1_13020 Physcomitrium patens HOM05D007027 ORTHO05D008765 3.9e-104 382.5 330 58.8
ClCG11G013270 Citrullus lanatus HOM05D007027 ORTHO05D008765 2.2e-99 366.7 381 54.3
Mapoly0016s0042 Marchantia polymorpha HOM05D007027 ORTHO05D008765 1.4e-98 364.0 379 52.0
Phvul.006G218900 Phaseolus vulgaris HOM05D007027 ORTHO05D008765 1.4e-93 347.4 252 67.1
Sc07g0005100 Simmondsia chinensis HOM05D007027 ORTHO05D008765 4.1e-93 345.9 276 64.1
HPP92_013442 Vanilla planifolia HOM05D007027 ORTHO05D008765 4.2e-90 335.9 309 57.6
SMO118G0354 Selaginella moellendorffii HOM05D007027 ORTHO05D008765 5.5e-90 335.5 323 54.2
Peaxi162Scf00011g01224 Petunia axillaris HOM05D007027 ORTHO05D008765 6.1e-81 305.4 407 49.1
CBR_g30061 Chara braunii HOM05D007027 ORTHO05D008765 1.1e-79 301.2 457 40.5
HPP92_013441 Vanilla planifolia HOM05D007027 ORTHO05D008765 3.7e-78 296.2 186 73.7
Aa31LG1G5150 Aethionema arabicum HOM05D007027 ORTHO05D008765 5.3e-77 292.4 219 66.2
CDE05G2927 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 1.0e-67 261.5 151 79.5
Lsat_1_v5_gn_9_120240 Lactuca sativa HOM05D007027 ORTHO05D008765 9.4e-66 255.0 184 72.3
AUR62028254 Chenopodium quinoa HOM05D007027 ORTHO05D008765 2.4e-61 240.4 197 62.4
MCO02G420 Micromonas commoda HOM05D007027 ORTHO05D008765 2.0e-55 220.7 373 39.4
Migut.B00774 Erythranthe guttata HOM05D007027 ORTHO05D008765 7.2e-50 202.2 143 72.0
CDE05G0566 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 6.2e-33 146.0 140 57.1
RcHm_v2.0_Chr3g0481081 Rosa chinensis HOM05D007027 ORTHO05D008765 1.4e-32 144.8 79 83.5
Mapoly0209s0002 Marchantia polymorpha HOM05D006708 ORTHO05D008321 1.2e-20 105.1 333 27.0
SMO361G0559 Selaginella moellendorffii HOM05D006708 ORTHO05D008321 2.7e-20 104.0 207 31.9
Pp3c21_5420 Physcomitrium patens HOM05D006708 ORTHO05D008321 7.8e-20 102.4 332 27.1
Cre09.g405150 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 5.1e-19 99.8 351 28.2
AagrBONN_evm.TU.Sc2ySwM_228.1603 Anthoceros agrestis HOM05D006708 ORTHO05D008321 1.2e-17 95.1 345 27.8
Aa31LG5G17510 Aethionema arabicum HOM05D006708 ORTHO05D008321 1.1e-16 92.0 368 26.4
Lj4g0015836 Lotus japonicus HOM05D006708 ORTHO05D008321 1.2e-15 88.6 218 31.7
HanXRQChr10g0293331 Helianthus annuus HOM05D006708 ORTHO05D008321 1.5e-15 88.2 201 30.8
SalBow2G2621 Salvia bowleyana HOM05D006708 ORTHO05D008321 3.4e-15 87.0 195 29.7
PGSC0003DMG400027203 Solanum tuberosum HOM05D006708 ORTHO05D008321 5.8e-15 86.3 230 28.7
CsaV3_6G000260 Cucumis sativus L. HOM05D006708 ORTHO05D008321 7.6e-15 85.9 198 31.3
Lsat_1_v5_gn_1_39980 Lactuca sativa HOM05D006708 ORTHO05D008321 7.6e-15 85.9 203 29.6
Lj6A702T41 Lonicera japonica HOM05D006708 ORTHO05D008321 1.3e-14 85.1 229 28.4
Nitab4.5_0000745g0080 Nicotiana tabacum HOM05D006708 ORTHO05D008321 1.3e-14 85.1 214 28.0
Hund22645 Selenicereus undatus HOM05D006708 ORTHO05D008321 1.3e-14 85.1 211 28.9
COL.COLO4_34511 Corchorus olitorius HOM05D006708 ORTHO05D008321 2.2e-14 84.3 197 31.0
Cre13.g591501 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 2.9e-14 84.0 340 26.5
RcHm_v2.0_Chr4g0427681 Rosa chinensis HOM05D006708 ORTHO05D008321 2.9e-14 84.0 200 28.5
Sopen05g031700 Solanum pennellii HOM05D006708 ORTHO05D008321 3.8e-14 83.6 195 31.3
MCO13G233 Micromonas commoda HOM05D006708 ORTHO05D008321 4.9e-14 83.2 331 26.6
Solyc05g053190.3 Solanum lycopersicum HOM05D006708 ORTHO05D008321 4.9e-14 83.2 230 28.7
Nn3g21927 Nelumbo nucifera HOM05D006708 ORTHO05D008321 6.4e-14 82.8 240 26.7
HPP92_001944 Vanilla planifolia HOM05D006708 ORTHO05D008321 6.4e-14 82.8 233 27.9
CSS0037344 Camellia sinensis var. sinensis HOM05D006708 ORTHO05D008321 1.1e-13 82.0 206 25.7
FAN12G1816 Fragaria x ananassa HOM05D006708 ORTHO05D008321 1.1e-13 82.0 199 27.6
FAN17G2628 Fragaria x ananassa HOM05D006708 ORTHO05D008321 1.4e-13 81.6 199 27.6
Ca_21374_v3 Cicer arietinum L. HOM05D006708 ORTHO05D008321 1.9e-13 81.3 212 32.1
FAN07G1828 Fragaria x ananassa HOM05D006708 ORTHO05D008321 1.9e-13 81.3 176 30.1
CSS0031150 Camellia sinensis var. sinensis HOM05D006708 ORTHO05D008321 2.4e-13 80.9 206 25.7
CANSAT64G0974 Cannabis sativa HOM05D006708 ORTHO05D008321 2.4e-13 80.9 220 27.7
Haze_12609 Corylus avellana HOM05D006708 ORTHO05D008321 3.2e-13 80.5 198 29.3
Haze_12620 Corylus avellana HOM05D006708 ORTHO05D008321 3.2e-13 80.5 198 29.3
FvH4_4g21570 Fragaria vesca HOM05D006708 ORTHO05D008321 3.2e-13 80.5 199 27.6
AL7G44200 Arabidopsis lyrata HOM05D006401 ORTHO05D007864 5.4e-13 79.7 391 24.8
Potri.008G206200 Populus trichocarpa HOM05D006708 ORTHO05D008321 5.4e-13 79.7 198 28.8
AUR62002543 Chenopodium quinoa HOM05D006708 ORTHO05D008321 7.1e-13 79.3 207 29.5
Carub.0007s3123 Capsella rubella HOM05D006401 ORTHO05D007864 9.2e-13 79.0 383 24.8
AT5G35400 Arabidopsis thaliana HOM05D006401 ORTHO05D007864 2.1e-12 77.8 389 25.4
Lalb_Chr18g0047341 Lupinus albus HOM05D006708 ORTHO05D008321 2.1e-12 77.8 184 31.0
QL06p014362 Quercus lobata HOM05D006708 ORTHO05D008321 2.1e-12 77.8 198 27.8
CBR_g55386 Chara braunii HOM05D006708 ORTHO05D008321 4.6e-12 76.6 229 31.0
ClCG06G004170 Citrullus lanatus HOM05D006708 ORTHO05D008321 1.7e-11 74.7 187 29.9
Zm00001eb245280 Zea mays HOM05D006708 ORTHO05D008321 6.6e-11 72.8 185 28.1
SEGI_30443 Sequoiadendron giganteum HOM05D007027 ORTHO05D008765 1.1e-10 72.0 51 70.6
Zm00001eb018490 Zea mays HOM05D005655 ORTHO05D007386 2.5e-10 70.9 323 25.1
Sed0006346 Sechium edule HOM05D006708 ORTHO05D008321 4.3e-10 70.1 280 26.1
Nitab4.5_0001769g0170 Nicotiana tabacum HOM05D006708 ORTHO05D008321 2.1e-09 67.8 177 28.2
DCAR_023411 Daucus carota HOM05D006708 ORTHO05D008321 6.2e-09 66.2 223 23.8
Pp3c5_14220 Physcomitrium patens HOM05D004376 ORTHO05D005304 6.9e-08 62.8 398 23.9
MELO3C021228.2 Cucumis melo HOM05D006708 ORTHO05D008321 2.6e-07 60.8 96 32.3
SGA_v2.0_scaffold318G48475 Striga asiatica HOM05D006401 ORTHO05D007864 3.4e-07 60.5 348 24.7
C06p11890 Brassica napus HOM05D005655 ORTHO05D000003 3.8e-06 57.0 204 27.9
SEGI_32206 Sequoiadendron giganteum HOM05D006708 ORTHO05D008321 3.8e-06 57.0 74 36.5
BcaC08g43808 Brassica carinata HOM05D005655 ORTHO05D007386 4.9e-06 56.6 203 27.6
BolC6t36321H Brassica oleracea HOM05D005655 ORTHO05D000003 4.9e-06 56.6 203 27.6
Lalb_Chr02g0141641 Lupinus albus HOM05D005655 ORTHO05D007386 6.4e-06 56.2 244 25.4


User provided reference genes

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