Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 5.5e-94 347.8 203 100.0
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 1.2e-93 346.7 203 99.5
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 2.8e-93 345.5 203 99.0
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 5.9e-88 327.8 203 93.6
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 1.1e-81 307.0 196 93.4
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 4.7e-77 291.6 203 86.2
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 4.4e-75 285.0 204 85.3
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 3.7e-74 282.0 204 84.8
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 3.7e-74 282.0 205 83.4
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 8.3e-74 280.8 203 84.2
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 1.1e-73 280.4 204 84.3
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 1.4e-73 280.0 207 84.1
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 1.4e-73 280.0 204 83.3
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 3.2e-73 278.9 198 84.3
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 5.4e-73 278.1 205 84.4
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 7.1e-73 277.7 203 80.8
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 7.1e-73 277.7 204 82.4
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 7.1e-73 277.7 202 84.7
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 9.2e-73 277.3 203 80.8
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 9.2e-73 277.3 203 80.8
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 9.2e-73 277.3 205 82.0
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 1.6e-72 276.6 202 82.2
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 1.0e-71 273.9 203 82.8
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 1.3e-71 273.5 205 82.9
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 1.3e-71 273.5 203 79.3
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 6.6e-71 271.2 204 80.4
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 8.6e-71 270.8 204 81.4
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 2.5e-70 269.2 203 79.8
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 5.6e-70 268.1 201 77.6
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 7.3e-70 267.7 202 80.7
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 7.3e-70 267.7 204 80.9
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 9.5e-70 267.3 205 82.0
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 2.1e-69 266.2 195 81.5
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 2.8e-69 265.8 205 80.0
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 2.8e-69 265.8 203 80.3
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 3.6e-69 265.4 201 81.6
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 8.1e-69 264.2 199 79.9
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 8.1e-69 264.2 203 79.8
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 8.1e-69 264.2 204 79.9
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 1.4e-68 263.5 202 80.7
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 3.1e-68 262.3 199 78.4
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 3.1e-68 262.3 201 77.1
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 4.0e-68 261.9 204 79.9
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 5.2e-68 261.5 204 80.9
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 6.8e-68 261.2 201 80.1
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 6.8e-68 261.2 201 80.1
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 1.5e-67 260.0 204 77.0
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 1.5e-67 260.0 201 79.6
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 2.6e-67 259.2 204 78.4
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 2.6e-67 259.2 201 79.1
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 2.6e-67 259.2 201 79.6
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 2.6e-67 259.2 201 79.1
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 3.4e-67 258.8 204 78.9
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 3.4e-67 258.8 204 78.9
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 4.4e-67 258.5 200 80.0
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 5.8e-67 258.1 205 78.5
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 5.8e-67 258.1 199 78.4
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 7.6e-67 257.7 199 78.9
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 9.9e-67 257.3 204 77.9
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 1.3e-66 256.9 203 78.8
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 1.3e-66 256.9 196 81.6
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 3.7e-66 255.4 200 79.0
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 4.9e-66 255.0 204 78.4
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 6.4e-66 254.6 201 78.1
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 8.4e-66 254.2 199 77.4
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 1.1e-65 253.8 195 81.0
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 1.1e-65 253.8 247 67.2
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 1.4e-65 253.4 194 80.9
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 1.4e-65 253.4 199 77.9
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 1.4e-65 253.4 201 78.6
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 1.9e-65 253.1 204 77.9
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 1.9e-65 253.1 206 77.7
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 1.9e-65 253.1 204 75.0
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 5.4e-65 251.5 205 76.6
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 7.1e-65 251.1 199 78.9
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 7.1e-65 251.1 205 77.1
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 9.2e-65 250.8 199 76.4
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 9.2e-65 250.8 199 76.4
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 1.2e-64 250.4 201 80.1
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 2.1e-64 249.6 204 77.5
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 2.7e-64 249.2 203 76.4
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 7.8e-64 247.7 199 79.4
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 1.0e-63 247.3 199 74.9
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 1.0e-63 247.3 204 76.5
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 1.0e-63 247.3 202 72.8
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 2.3e-63 246.1 206 77.2
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 3.0e-63 245.7 198 76.8
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 3.9e-63 245.4 204 77.0
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 5.1e-63 245.0 204 77.0
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 5.1e-63 245.0 201 79.1
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.1e-62 243.8 204 76.5
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 1.1e-62 243.8 205 69.3
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 7.3e-62 241.1 200 77.5
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 7.3e-62 241.1 200 77.5
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 3.6e-61 238.8 202 76.2
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 1.4e-60 236.9 171 86.0
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 4.0e-60 235.3 200 73.0
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 8.9e-60 234.2 198 73.7
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 2.6e-59 232.6 193 77.2
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 5.8e-59 231.5 202 74.8
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.1e-57 227.3 161 85.7
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 1.4e-57 226.9 211 60.7
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 3.2e-57 225.7 153 76.5
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 4.2e-57 225.3 275 57.5
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 9.3e-57 224.2 147 80.3
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 2.7e-56 222.6 203 72.4
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 5.1e-55 218.4 197 70.1
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 2.1e-53 213.0 294 54.4
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 4.8e-53 211.8 196 72.4
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 6.2e-53 211.5 214 59.3
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 4.0e-52 208.8 146 69.9
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.3e-50 203.8 196 69.9
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 1.9e-49 199.9 142 68.3
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 4.2e-49 198.7 203 66.0
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 1.6e-48 196.8 202 62.9
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 2.1e-48 196.4 138 71.7
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 2.3e-47 193.0 223 64.1
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 3.0e-47 192.6 112 85.7
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 5.8e-43 178.3 161 73.3
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 1.3e-42 177.2 123 91.1
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.5e-38 163.7 147 65.3
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 4.8e-37 158.7 141 61.7
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.9e-33 146.7 209 57.9
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 1.9e-33 146.7 220 45.5
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 5.5e-33 145.2 123 66.7
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 2.7e-32 142.9 284 46.5
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 1.9e-30 136.7 226 50.0
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 2.8e-29 132.9 200 43.0
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 3.9e-23 112.5 210 45.2
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 6.7e-23 111.7 157 45.9
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 7.7e-19 98.2 96 75.0
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 4.2e-17 92.4 211 35.5
Zm00001eb114570 Zea mays HOM05D005935 ORTHO05D007012 5.5e-17 92.0 91 75.8
Zm00001eb180860 Zea mays HOM05D005935 ORTHO05D007012 2.0e-11 73.6 46 78.3
Cfa024511 Carpinus fangiana HOM05D005935 ORTHO05D007012 1.4e-07 60.8 172 28.5


User provided reference genes

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