Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g091430.2 Solanum lycopersicum HOM05D004484 ORTHO05D005370 2.5e-68 261.9 127 100.0
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 3.4e-49 198.4 115 87.8
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 3.4e-49 198.4 115 87.8
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 3.4e-49 198.4 115 87.0
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 2.3e-45 185.7 115 82.6
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 3.6e-43 178.3 115 76.5
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 3.4e-41 171.8 115 74.8
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 9.9e-41 170.2 115 74.8
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 2.0e-33 146.0 100 72.0
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 5.5e-31 137.9 95 72.6
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 3.5e-30 135.2 95 67.4
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 9.6e-28 127.1 98 63.3
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 2.1e-27 125.9 93 67.7
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 2.1e-27 125.9 95 67.4
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 2.8e-27 125.6 95 66.3
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 3.7e-27 125.2 99 62.6
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 3.7e-27 125.2 93 67.7
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 4.8e-27 124.8 99 67.7
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 8.2e-27 124.0 98 64.3
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 1.1e-26 123.6 95 65.3
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.8e-26 122.9 95 63.2
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.8e-26 122.9 95 63.2
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 1.8e-26 122.9 95 63.2
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 3.1e-26 122.1 98 63.3
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 5.3e-26 121.3 101 60.4
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 6.9e-26 120.9 101 60.4
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 9.0e-26 120.6 95 64.2
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 1.2e-25 120.2 98 61.2
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 3.4e-25 118.6 95 63.2
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 3.4e-25 118.6 100 61.0
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 3.4e-25 118.6 95 63.2
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 5.8e-25 117.9 95 63.2
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 5.8e-25 117.9 95 63.2
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 5.8e-25 117.9 95 63.2
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 1.3e-24 116.7 99 63.6
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 1.7e-24 116.3 95 61.1
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 1.7e-24 116.3 99 59.6
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 8.4e-24 114.0 95 61.1
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 1.4e-23 113.2 96 64.6
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 1.4e-23 113.2 95 62.1
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 1.4e-23 113.2 95 63.2
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 2.5e-23 112.5 95 58.9
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 4.2e-23 111.7 101 55.4
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 5.5e-23 111.3 95 60.0
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 5.5e-23 111.3 95 61.1
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 5.5e-23 111.3 95 60.0
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 5.5e-23 111.3 108 56.5
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 5.5e-23 111.3 95 62.1
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 1.2e-22 110.2 95 58.9
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 1.2e-22 110.2 95 60.0
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.2e-22 110.2 95 60.0
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.2e-22 110.2 95 60.0
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.2e-22 110.2 95 60.0
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.2e-22 110.2 95 60.0
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 1.6e-22 109.8 95 58.9
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.7e-22 109.0 95 60.0
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 2.7e-22 109.0 95 62.1
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 3.5e-22 108.6 99 58.6
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 6.0e-22 107.8 95 60.0
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 1.0e-21 107.1 97 57.7
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 1.0e-21 107.1 87 64.4
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 1.3e-21 106.7 97 51.5
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.8e-21 106.3 95 61.1
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 1.8e-21 106.3 99 51.5
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.3e-21 105.9 95 61.1
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 2.3e-21 105.9 95 61.1
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 8.7e-21 104.0 99 52.5
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 1.1e-20 103.6 95 55.8
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.1e-20 103.6 95 57.9
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 1.5e-20 103.2 79 68.4
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.5e-20 102.4 97 57.7
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 3.3e-20 102.1 111 51.4
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 4.3e-20 101.7 95 55.8
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 4.3e-20 101.7 95 56.8
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 9.7e-20 100.5 101 51.5
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 1.6e-19 99.8 100 55.0
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 2.2e-19 99.4 92 53.3
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 2.2e-19 99.4 99 51.5
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 4.8e-19 98.2 79 64.6
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 8.2e-19 97.4 100 53.0
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 1.1e-18 97.1 96 55.2
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 1.4e-18 96.7 102 54.9
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 1.8e-18 96.3 100 54.0
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 1.8e-18 96.3 100 54.0
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 2.4e-18 95.9 95 50.5
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 3.1e-18 95.5 96 55.2
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 5.3e-18 94.7 95 46.3
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 1.2e-17 93.6 101 53.5
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 1.5e-17 93.2 96 55.2
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 1.5e-17 93.2 99 52.5
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 2.0e-17 92.8 95 50.5
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 3.4e-17 92.0 96 54.2
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 3.4e-17 92.0 95 50.5
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 3.4e-17 92.0 95 46.3
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 5.9e-17 91.3 87 55.2
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 5.9e-17 91.3 95 51.6
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 1.0e-16 90.5 95 45.3
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 3.8e-16 88.6 105 45.7
QL08p052505 Quercus lobata HOM05D004484 ORTHO05D005370 6.5e-16 87.8 122 45.1
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 1.4e-15 86.7 99 45.5
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 9.4e-15 84.0 80 47.5
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 3.6e-14 82.0 81 58.0
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 3.6e-14 82.0 90 44.4
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 1.4e-13 80.1 93 41.9
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 6.7e-13 77.8 107 38.3
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 1.3e-11 73.6 76 48.7
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 1.7e-11 73.2 83 44.6
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 2.8e-11 72.4 105 36.2
Eucgr.E01421 Eucalyptus grandis HOM05D004484 ORTHO05D005370 3.7e-11 72.0 62 59.7
Oeu032522.1 Olea europaea HOM05D004484 ORTHO05D005370 1.4e-10 70.1 59 59.3
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 1.8e-10 69.7 94 40.4
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 6.9e-10 67.8 83 43.4
CAN.G388.14 Capsicum annuum HOM05D004484 ORTHO05D005370 2.6e-09 65.9 104 43.3
Eucgr.L02075 Eucalyptus grandis HOM05D004484 ORTHO05D005370 5.9e-09 64.7 62 54.8
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 1.9e-07 59.7 96 41.7
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 1.9e-07 59.7 60 50.0
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 2.7e-06 55.8 65 43.1


User provided reference genes

Program Settings