Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g017440.1 Solanum lycopersicum HOM05D000964 ORTHO05D004047 6.3e-114 414.1 203 100.0
PGSC0003DMG400014075 Solanum tuberosum HOM05D000964 ORTHO05D004047 1.1e-76 290.4 293 57.0
CAN.G1595.4 Capsicum annuum HOM05D000964 ORTHO05D004047 4.4e-75 285.0 293 56.0
CAN.G1478.7 Capsicum annuum HOM05D000964 ORTHO05D004047 5.4e-73 278.1 293 54.9
CAN.G327.18 Capsicum annuum HOM05D000964 ORTHO05D004047 1.3e-71 273.5 293 54.6
PGSC0003DMG400002472 Solanum tuberosum HOM05D000964 ORTHO05D004047 3.0e-71 272.3 202 71.3
PGSC0003DMG400003335 Solanum tuberosum HOM05D000964 ORTHO05D004047 1.4e-68 263.5 202 69.3
DCAR_032517 Daucus carota HOM05D000964 ORTHO05D004047 5.4e-65 251.5 294 49.3
Oeu012810.1 Olea europaea HOM05D000964 ORTHO05D004047 1.2e-64 250.4 289 50.5
Oeu058362.1 Olea europaea HOM05D000964 ORTHO05D004047 1.2e-64 250.4 293 50.2
Migut.D01434 Erythranthe guttata HOM05D000964 ORTHO05D004047 1.0e-63 247.3 291 49.8
MSTRG.11748 Avicennia marina HOM05D000964 ORTHO05D004047 9.6e-62 240.7 293 49.1
HanXRQChr00c0593g0576341 Helianthus annuus HOM05D000964 ORTHO05D004047 4.0e-60 235.3 291 47.4
HanXRQChr01g0020241 Helianthus annuus HOM05D000964 ORTHO05D004047 4.0e-60 235.3 291 47.4
HanXRQChr04g0127511 Helianthus annuus HOM05D000964 ORTHO05D004047 4.0e-60 235.3 291 47.4
HanXRQChr10g0284361 Helianthus annuus HOM05D000964 ORTHO05D004047 4.0e-60 235.3 291 47.4
HanXRQChr10g0318081 Helianthus annuus HOM05D000964 ORTHO05D004047 4.0e-60 235.3 291 47.4
HanXRQChr11g0326941 Helianthus annuus HOM05D000964 ORTHO05D004047 4.0e-60 235.3 291 47.4
HanXRQCPg0580161 Helianthus annuus HOM05D000964 ORTHO05D004047 4.0e-60 235.3 291 47.4
HanXRQChr00c0394g0574561 Helianthus annuus HOM05D000964 ORTHO05D004047 2.9e-58 229.2 200 60.5
Lj2P1237T122 Lonicera japonica HOM05D000964 ORTHO05D004047 6.4e-58 228.0 259 49.8
Lju5009P0T55 Lonicera japonica HOM05D000964 ORTHO05D004047 6.4e-58 228.0 259 49.8
RcHm_v2.0_CPg0501901 Rosa chinensis HOM05D000964 ORTHO05D004047 6.4e-58 228.0 291 47.1
PSO548G0113 Papaver somniferum HOM05D000964 ORTHO05D004047 8.4e-58 227.6 293 47.1
Nitab4.5_0004376g0120 Nicotiana tabacum HOM05D000964 ORTHO05D004047 5.4e-57 224.9 280 48.9
Gohir.1Z050334 Gossypium hirsutum HOM05D000964 ORTHO05D004047 2.1e-56 223.0 202 59.4
Gohir.A12G025100 Gossypium hirsutum HOM05D000964 ORTHO05D004047 2.1e-56 223.0 202 59.4
Gohir.D01G102099 Gossypium hirsutum HOM05D000964 ORTHO05D004047 2.1e-56 223.0 202 59.4
Lsat_1_v5_gn_0_41600 Lactuca sativa HOM05D000964 ORTHO05D004047 2.1e-56 223.0 200 59.0
Lsat_1_v5_gn_7_96560 Lactuca sativa HOM05D000964 ORTHO05D004047 2.1e-56 223.0 200 59.0
PGR111G0002 Punica granatum HOM05D000964 ORTHO05D004047 2.1e-56 223.0 293 46.4
Hma1.2p1_0818F.1_g223330 Hydrangea macrophylla HOM05D000964 ORTHO05D004047 3.5e-56 222.2 259 49.0
arahy.Tifrunner.gnm1.ann1.93R6SD Arachis hypogaea HOM05D000964 ORTHO05D004047 7.8e-56 221.1 283 46.3
Lalb_Chr25g0283351 Lupinus albus HOM05D000964 ORTHO05D004047 8.7e-55 217.6 293 46.4
ATCG00740 Arabidopsis thaliana HOM05D000964 ORTHO05D004047 1.5e-54 216.9 295 43.4
Lsat_1_v5_gn_5_50401 Lactuca sativa HOM05D000964 ORTHO05D004047 1.9e-54 216.5 200 58.0
AL2G20580 Arabidopsis lyrata HOM05D000964 ORTHO05D004047 4.3e-54 215.3 293 43.3
AL2G21700 Arabidopsis lyrata HOM05D000964 ORTHO05D004047 4.3e-54 215.3 293 43.3
Medtr4g051380 Medicago truncatula HOM05D000964 ORTHO05D004047 4.3e-54 215.3 292 44.9
CARHR282230 Cardamine hirsuta HOM05D000964 ORTHO05D004047 7.3e-54 214.5 293 43.0
BraSC143t45635Z Brassica rapa HOM05D000964 ORTHO05D004047 1.3e-53 213.8 286 43.7
BraA06t25382Z Brassica rapa HOM05D000964 ORTHO05D004047 2.1e-53 213.0 201 54.7
arahy.Tifrunner.gnm1.ann1.918II3 Arachis hypogaea HOM05D000964 ORTHO05D004047 2.8e-53 212.6 292 44.5
Solyc00g500157.1 Solanum lycopersicum HOM05D000964 ORTHO05D004047 3.6e-53 212.2 261 49.0
Solyc09g050062.1 Solanum lycopersicum HOM05D000964 ORTHO05D004047 3.6e-53 212.2 261 49.0
BolSC46t61018H Brassica oleracea HOM05D000964 ORTHO05D004047 4.8e-53 211.8 201 54.2
Lj2C1239T2 Lonicera japonica HOM05D000964 ORTHO05D004047 4.8e-53 211.8 253 47.8
LjContig00318g0022290 Lotus japonicus HOM05D000964 ORTHO05D004047 2.6e-51 206.1 293 43.7
LjContig00319g0012184 Lotus japonicus HOM05D000964 ORTHO05D004047 2.6e-51 206.1 293 43.7
LjContig00319g0026138 Lotus japonicus HOM05D000964 ORTHO05D004047 2.6e-51 206.1 293 43.7
Gohir.A01G137773 Gossypium hirsutum HOM05D000964 ORTHO05D004047 1.9e-49 199.9 251 47.8
C02p60150 Brassica napus HOM05D000964 ORTHO05D004047 3.2e-49 199.1 293 41.3
ClCG11G017180 Citrullus lanatus HOM05D000964 ORTHO05D004047 3.2e-49 199.1 288 43.8
Nn002s41359 Nelumbo nucifera HOM05D000964 ORTHO05D004047 3.2e-49 199.1 259 44.8
Nitab4.5_0001564g0040 Nicotiana tabacum HOM05D000964 ORTHO05D004047 4.2e-49 198.7 245 46.9
BolSC29t60485H Brassica oleracea HOM05D000964 ORTHO05D004047 1.6e-48 196.8 257 43.6
BolSC29t60607H Brassica oleracea HOM05D000964 ORTHO05D004047 1.6e-48 196.8 257 43.6
Lsat_1_v5_gn_6_69061 Lactuca sativa HOM05D000964 ORTHO05D004047 1.6e-48 196.8 199 53.8
HanXRQChr11g0345261 Helianthus annuus HOM05D000964 ORTHO05D004047 3.9e-47 192.2 166 59.6
Medtr0002s0760 Medicago truncatula HOM05D000964 ORTHO05D004047 1.5e-46 190.3 290 42.4
Nn5g30296 Nelumbo nucifera HOM05D000964 ORTHO05D004047 2.5e-46 189.5 168 58.3
Hund08596 Selenicereus undatus HOM05D000964 ORTHO05D004047 4.3e-46 188.7 216 52.3
Cpa.g.c42072 Carica papaya HOM05D000964 ORTHO05D004047 5.6e-46 188.3 244 45.9
HanXRQChr12g0369841 Helianthus annuus HOM05D000964 ORTHO05D004047 1.3e-45 187.2 160 59.4
EL10Ac4g08559 Beta vulgaris HOM05D000964 ORTHO05D004047 1.8e-44 183.3 273 44.0
Gohir.A05G326924 Gossypium hirsutum HOM05D000964 ORTHO05D004047 4.0e-44 182.2 162 59.3
Gohir.A09G245632 Gossypium hirsutum HOM05D000964 ORTHO05D004047 9.0e-44 181.0 161 57.1
Nn049s41916 Nelumbo nucifera HOM05D000964 ORTHO05D004047 1.2e-43 180.6 244 43.9
BolSC49t61165H Brassica oleracea HOM05D000964 ORTHO05D004047 4.9e-42 175.3 234 43.6
TWI75G0222 Tripterygium wilfordii HOM05D000964 ORTHO05D004047 1.0e-39 167.5 178 52.8
MELO3C000951.2 Cucumis melo HOM05D000964 ORTHO05D004047 1.8e-39 166.8 144 60.4
MELO3C027953.2 Cucumis melo HOM05D000964 ORTHO05D004047 1.8e-39 166.8 144 60.4
HPP92_028393 Vanilla planifolia HOM05D000964 ORTHO05D004047 6.7e-39 164.9 293 39.2
HPP92_028402 Vanilla planifolia HOM05D000964 ORTHO05D004047 6.7e-39 164.9 293 39.2
HPP92_028410 Vanilla planifolia HOM05D000964 ORTHO05D004047 6.7e-39 164.9 293 39.2
Gorai.010G120000 Gossypium raimondii HOM05D000964 ORTHO05D004047 2.5e-38 162.9 144 59.0
HanXRQChr15g0486541 Helianthus annuus HOM05D000964 ORTHO05D004047 2.5e-38 162.9 257 38.9
PSO478G2461 Papaver somniferum HOM05D000964 ORTHO05D004047 1.4e-36 157.1 135 60.0
Nn070s42369 Nelumbo nucifera HOM05D000964 ORTHO05D004047 4.0e-36 155.6 221 43.0
Peaxi162Scf00705g00612 Petunia axillaris HOM05D000964 ORTHO05D004047 6.9e-36 154.8 128 63.3
Gohir.D08G194628 Gossypium hirsutum HOM05D000964 ORTHO05D004047 1.1e-33 147.5 195 45.6
Lalb_Chr03g0039311 Lupinus albus HOM05D000964 ORTHO05D004047 2.5e-33 146.4 202 46.5
Gorai.004G205100 Gossypium raimondii HOM05D000964 ORTHO05D004047 2.7e-32 142.9 133 56.4
EL10As15g24109 Beta vulgaris HOM05D000964 ORTHO05D004047 1.8e-31 140.2 213 42.3
Duzib165G0005 Durio zibethinus HOM05D000964 ORTHO05D004047 5.1e-31 138.7 160 48.8
Hund29571 Selenicereus undatus HOM05D000964 ORTHO05D004047 6.7e-31 138.3 229 39.3
SEGI_22757 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 4.3e-30 135.6 201 41.3
Peaxi162Scf00527g00039 Petunia axillaris HOM05D000964 ORTHO05D004047 2.1e-29 133.3 201 40.3
arahy.Tifrunner.gnm1.ann1.YUC9G4 Arachis hypogaea HOM05D000964 ORTHO05D004047 2.8e-29 132.9 220 38.6
EL10Ac4g07915 Beta vulgaris HOM05D000890 ORTHO05D000697 2.8e-29 132.9 123 57.7
Psat4g041120 Pisum sativum HOM05D000964 ORTHO05D004047 3.7e-29 132.5 133 51.9
SEGI_04931 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 3.7e-29 132.5 201 40.8
SEGI_17120 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 3.7e-29 132.5 201 40.8
SEGI_21589 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 3.7e-29 132.5 201 40.8
SEGI_32358 Sequoiadendron giganteum HOM05D000216 ORTHO05D001131 3.7e-29 132.5 201 40.8
SEGI_36889 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 3.7e-29 132.5 201 40.8
Oeu012812.1 Olea europaea HOM05D000964 ORTHO05D004047 1.1e-28 131.0 186 43.5
SEGI_33647 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 5.3e-28 128.6 201 40.3
MELO3C033568.2 Cucumis melo HOM05D000964 ORTHO05D004047 2.0e-27 126.7 128 51.6
Sed0000903 Sechium edule HOM05D000964 ORTHO05D004047 4.5e-27 125.6 279 34.1
SEGI_02369 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 3.8e-26 122.5 201 38.8
CiPaw.07G080400 Carya illinoinensis HOM05D000964 ORTHO05D004047 1.4e-25 120.6 96 63.5
Gorai.013G106800 Gossypium raimondii HOM05D000964 ORTHO05D004047 3.2e-25 119.4 128 52.3
Hund30094 Selenicereus undatus HOM05D000964 ORTHO05D004047 4.2e-25 119.0 114 56.1
HanXRQChr00c0392g0574491 Helianthus annuus HOM05D000964 ORTHO05D004047 5.5e-25 118.6 116 54.3
Gorai.007G252200 Gossypium raimondii HOM05D000964 ORTHO05D004047 3.0e-23 112.8 139 46.8
EL10As12g24034 Beta vulgaris HOM05D000964 ORTHO05D004047 5.1e-23 112.1 179 39.1
SEGI_31867 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 8.7e-23 111.3 184 39.1
EL10Ac5g11667 Beta vulgaris HOM05D000964 ORTHO05D004047 1.1e-22 110.9 183 40.4
Hund08803 Selenicereus undatus HOM05D000964 ORTHO05D004047 2.5e-22 109.8 179 36.9
Hund29611 Selenicereus undatus HOM05D000964 ORTHO05D004047 2.5e-22 109.8 179 36.9
Hund30271 Selenicereus undatus HOM05D000964 ORTHO05D004047 2.5e-22 109.8 179 36.9
Hund31408 Selenicereus undatus HOM05D000964 ORTHO05D004047 2.5e-22 109.8 179 36.9
Nitab4.5_0020737g0020 Nicotiana tabacum HOM05D000964 ORTHO05D004047 5.7e-22 108.6 86 60.5
BNapus_Darmor_BZH_scaffold_253p00330 Brassica napus HOM05D000964 ORTHO05D004047 7.4e-22 108.2 198 36.4
Atru.chr12.312 Acer truncatum HOM05D000964 ORTHO05D004047 9.7e-22 107.8 165 40.0
Pp3c5_15590 Physcomitrium patens HOM05D000964 ORTHO05D004047 1.3e-21 107.5 202 34.2
Hma1.2p1_0818F.1_g223310 Hydrangea macrophylla HOM05D000631 ORTHO05D004047 1.6e-21 107.1 88 58.0
HanXRQChr05g0152581 Helianthus annuus HOM05D000964 ORTHO05D004047 2.2e-21 106.7 88 59.1
HanXRQChr10g0303891 Helianthus annuus HOM05D000964 ORTHO05D004047 2.8e-21 106.3 179 36.9
Oeu064090.1 Olea europaea HOM05D000964 ORTHO05D004047 4.8e-21 105.5 108 54.6
Lsat_1_v5_gn_2_92080 Lactuca sativa HOM05D000964 ORTHO05D004047 1.4e-20 104.0 86 59.3
Gohir.D02G179050 Gossypium hirsutum HOM05D000964 ORTHO05D004047 5.3e-20 102.1 88 56.8
HanXRQChr02g0052621 Helianthus annuus HOM05D000964 ORTHO05D003870 2.6e-19 99.8 65 72.3
HanXRQChr11g0321081 Helianthus annuus HOM05D000964 ORTHO05D004047 4.5e-19 99.0 151 40.4
Gohir.D03G062001 Gossypium hirsutum HOM05D000964 ORTHO05D004047 1.7e-18 97.1 114 49.1
HanXRQChr03g0068101 Helianthus annuus HOM05D000964 ORTHO05D004047 3.8e-18 95.9 86 55.8
Psat5g068400 Pisum sativum HOM05D000964 ORTHO05D004047 3.8e-18 95.9 104 49.0
BraSC58t46439Z Brassica rapa HOM05D000964 ORTHO05D004047 1.1e-17 94.4 154 37.0
Gohir.A08G063300 Gossypium hirsutum HOM05D000964 ORTHO05D004047 1.1e-17 94.4 66 68.2
SEGI_27150 Sequoiadendron giganteum HOM05D001133 ORTHO05D000941 1.1e-17 94.4 105 50.5
Sed0010415 Sechium edule HOM05D000964 ORTHO05D003870 1.4e-17 94.0 66 66.7
Sed0021757 Sechium edule HOM05D000964 ORTHO05D003870 1.4e-17 94.0 66 66.7
Sed0026352 Sechium edule HOM05D000964 ORTHO05D004047 1.4e-17 94.0 66 66.7
BraSC58t46500Z Brassica rapa HOM05D000964 ORTHO05D004047 2.5e-17 93.2 69 60.9
TPR.G38392 Trifolium pratense HOM05D000964 ORTHO05D004047 9.4e-17 91.3 74 64.9
Psat7g045240 Pisum sativum HOM05D000964 ORTHO05D004047 1.6e-16 90.5 100 46.0
MD01G1006600 Malus domestica HOM05D000964 ORTHO05D004047 3.6e-16 89.4 84 53.6
BNapus_Darmor_BZH_scaffold_287p00260 Brassica napus HOM05D000964 ORTHO05D004047 4.6e-16 89.0 150 36.7
Zm00001eb255890 Zea mays HOM05D000964 ORTHO05D004047 1.4e-15 87.4 153 37.3
Zm00001eb434880 Zea mays HOM05D000964 ORTHO05D004047 1.4e-15 87.4 153 37.3
Zm00001eb435090 Zea mays HOM05D000964 ORTHO05D004047 1.4e-15 87.4 153 37.3
Zm00001eb435140 Zea mays HOM05D000964 ORTHO05D004047 1.4e-15 87.4 153 37.3
Zm00001eb435360 Zea mays HOM05D000964 ORTHO05D004047 1.4e-15 87.4 153 37.3
Pp3c11_16940 Physcomitrium patens HOM05D000964 ORTHO05D004047 3.0e-15 86.3 202 29.2
Hund07962 Selenicereus undatus HOM05D000964 ORTHO05D004047 3.0e-15 86.3 114 46.5
Lalb_Chr20g0115411 Lupinus albus HOM05D000964 ORTHO05D004047 3.3e-14 82.8 66 57.6
Psat5g206600 Pisum sativum HOM05D000964 ORTHO05D004047 4.3e-14 82.4 58 65.5
Atru.chr12.2306 Acer truncatum HOM05D000964 ORTHO05D004047 7.4e-14 81.6 65 60.0
Gohir.A12G228525 Gossypium hirsutum HOM05D000964 ORTHO05D004047 2.8e-13 79.7 172 34.3
CSS0021839 Camellia sinensis var. sinensis HOM05D000964 ORTHO05D004047 8.2e-13 78.2 179 35.2
arahy.Tifrunner.gnm1.ann1.Z4WADK Arachis hypogaea HOM05D000964 ORTHO05D004047 4.1e-12 75.9 147 32.7
Gorai.005G117200 Gossypium raimondii HOM05D000964 ORTHO05D004047 4.1e-12 75.9 45 75.6
Psat6g111000 Pisum sativum HOM05D000964 ORTHO05D004047 4.1e-12 75.9 142 33.8
HanXRQChr08g0207991 Helianthus annuus HOM05D000964 ORTHO05D003870 5.3e-12 75.5 44 79.5
Gohir.D08G145550 Gossypium hirsutum HOM05D000964 ORTHO05D003870 6.9e-12 75.1 72 51.4
SMO086G0025 Selaginella moellendorffii HOM05D000964 ORTHO05D004047 1.2e-11 74.3 143 32.9
Gohir.D02G103150 Gossypium hirsutum HOM05D000964 ORTHO05D004047 2.0e-11 73.6 45 75.6
BolSC35t60667H Brassica oleracea HOM05D000964 ORTHO05D004047 7.7e-11 71.6 138 34.1
Solyc12g035890.3 Solanum lycopersicum HOM05D000964 ORTHO05D004047 1.0e-10 71.2 68 51.5
RcHm_v2.0_Chr5g0083591 Rosa chinensis HOM05D000964 ORTHO05D004047 3.8e-10 69.3 49 69.4
Gorai.004G150700 Gossypium raimondii HOM05D000964 ORTHO05D003870 8.5e-10 68.2 58 56.9
CsaV3_3G019080 Cucumis sativus L. HOM05D000964 ORTHO05D004047 1.4e-09 67.4 50 64.0
CAN.G413.1 Capsicum annuum HOM05D000964 ORTHO05D003870 3.2e-09 66.2 40 77.5
BraSC59t46573Z Brassica rapa HOM05D000964 ORTHO05D004047 2.7e-08 63.2 135 31.9
arahy.Tifrunner.gnm1.ann1.P04IPH Arachis hypogaea HOM05D000580 ORTHO05D001362 1.8e-07 60.5 60 55.0
Manes.09G008550 Manihot esculenta HOM05D000964 ORTHO05D004047 5.1e-07 58.9 42 61.9
Nitab4.5_0000014g0500 Nicotiana tabacum HOM05D000964 ORTHO05D004047 1.5e-06 57.4 52 50.0
Medtr1g070860 Medicago truncatula HOM05D000964 ORTHO05D004047 2.6e-06 56.6 167 28.1
Lsat_1_v5_gn_8_146180 Lactuca sativa HOM05D000964 ORTHO05D003870 7.4e-06 55.1 33 75.8


User provided reference genes

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