Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 0.0e+00 1322.4 673 100.0
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 0.0e+00 1317.8 673 99.6
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 0.0e+00 1214.1 681 89.6
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 0.0e+00 1197.2 690 88.4
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 0.0e+00 1180.2 674 89.0
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 0.0e+00 1144.8 674 84.3
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 0.0e+00 1139.8 668 85.9
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 0.0e+00 1129.8 674 84.4
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 0.0e+00 1128.6 674 83.7
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 0.0e+00 1125.2 674 83.5
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 0.0e+00 1123.6 670 83.6
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 0.0e+00 1122.5 668 84.1
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 0.0e+00 1121.7 675 83.4
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1121.7 675 82.8
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 0.0e+00 1117.8 674 82.9
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1117.4 666 83.3
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 0.0e+00 1116.3 674 82.6
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 0.0e+00 1115.5 670 83.0
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 0.0e+00 1115.5 666 83.2
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 0.0e+00 1114.0 677 82.4
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 0.0e+00 1113.6 672 82.1
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1112.4 666 82.9
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 0.0e+00 1107.4 673 82.0
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 0.0e+00 1106.7 672 83.0
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 0.0e+00 1104.7 667 82.0
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 0.0e+00 1104.4 674 82.0
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 0.0e+00 1103.6 670 81.6
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 0.0e+00 1100.9 669 82.1
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 0.0e+00 1099.7 674 81.0
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 0.0e+00 1097.4 674 81.0
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1097.0 671 82.0
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 0.0e+00 1096.3 671 82.1
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1095.9 671 81.8
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1094.7 671 81.7
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 0.0e+00 1090.9 677 81.8
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1090.1 671 81.4
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 0.0e+00 1090.1 670 80.6
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 0.0e+00 1088.9 658 82.4
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 0.0e+00 1088.2 674 80.7
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 0.0e+00 1085.5 660 82.3
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 0.0e+00 1085.1 677 80.9
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 0.0e+00 1085.1 671 80.9
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 0.0e+00 1082.4 671 80.9
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 0.0e+00 1081.6 672 80.5
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 0.0e+00 1080.5 699 77.7
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 0.0e+00 1080.1 728 77.7
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 0.0e+00 1078.5 658 80.4
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 0.0e+00 1075.8 675 80.1
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 4.6e-312 1073.9 667 80.8
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 1.8e-311 1072.0 661 80.8
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 1.8e-311 1072.0 670 80.6
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 3.2e-311 1071.2 660 81.2
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 4.1e-311 1070.8 709 76.9
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 1.0e-309 1066.2 664 79.1
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 1.0e-309 1066.2 664 79.5
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 1.7e-309 1065.4 664 78.9
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 8.6e-309 1063.1 658 79.8
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 2.5e-308 1061.6 691 77.3
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 7.3e-308 1060.1 689 78.2
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 4.7e-307 1057.4 678 77.9
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 6.1e-307 1057.0 658 79.6
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 1.0e-306 1056.2 658 79.5
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 1.0e-306 1056.2 644 81.4
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 2.3e-306 1055.0 664 78.8
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 2.3e-306 1055.0 664 78.9
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 5.2e-306 1053.9 668 78.3
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 5.2e-306 1053.9 646 80.3
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 5.2e-306 1053.9 646 80.3
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 8.9e-306 1053.1 661 79.4
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 5.8e-305 1050.4 675 77.3
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 4.1e-303 1044.3 686 76.5
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 2.7e-302 1041.6 674 77.4
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 3.9e-301 1037.7 672 75.7
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 6.6e-301 1036.9 695 75.0
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 8.3e-296 1020.0 758 71.4
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 8.6e-293 1010.0 698 74.8
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 1.5e-292 1009.2 671 75.0
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 2.5e-292 1008.4 646 76.3
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 2.1e-291 1005.4 641 78.0
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 3.9e-285 984.6 675 75.9
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 1.2e-283 979.5 642 76.6
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 1.3e-277 959.5 674 73.4
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 9.3e-271 936.8 674 72.7
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 2.1e-270 935.6 578 80.4
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 6.2e-267 924.1 629 72.7
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 1.1e-266 923.3 597 77.7
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 7.9e-262 907.1 589 76.4
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 7.9e-262 907.1 665 67.4
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 1.0e-261 906.7 673 67.9
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 2.4e-258 895.6 654 72.2
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 1.1e-255 886.7 667 70.0
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 4.2e-255 884.8 648 68.4
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 1.0e-253 880.2 660 67.0
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 7.4e-252 874.0 508 84.1
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 1.0e-248 863.6 637 70.6
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 4.5e-241 838.2 701 63.5
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 7.9e-238 827.4 701 62.9
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 2.2e-224 782.7 443 86.7
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 5.9e-209 731.5 466 75.3
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 1.3e-200 703.7 386 94.3
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 4.7e-198 695.3 668 54.6
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 1.8e-197 693.3 365 96.4
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 9.8e-180 634.4 548 62.2
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 6.6e-176 621.7 632 52.4
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 3.3e-175 619.4 374 84.0
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 1.5e-172 610.5 365 83.8
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 2.6e-172 609.8 382 78.0
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 2.3e-168 596.7 635 51.2
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 3.6e-166 589.3 307 97.4
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 3.4e-164 582.8 308 94.8
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 1.6e-142 510.8 304 82.6
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 1.1e-141 508.1 367 73.0
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 3.8e-139 499.6 607 50.6
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 1.0e-112 411.8 296 71.3
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 5.3e-109 399.4 466 50.9
Actinidia06319 Actinidia chinensis HOM05D004763 ORTHO05D007492 7.5e-79 299.3 216 70.4
SEGI_39045 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 7.5e-79 299.3 217 68.7
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 5.4e-61 240.0 172 69.2
Lju1319C4G3 Lonicera japonica HOM05D004763 ORTHO05D014896 7.1e-61 239.6 242 58.7
Oeu036968.1 Olea europaea HOM05D004763 ORTHO05D007492 9.2e-53 212.6 104 94.2
TPR.G29742 Trifolium pratense HOM05D004763 ORTHO05D007492 2.3e-51 208.0 246 50.8
TPR.G29743 Trifolium pratense HOM05D004763 ORTHO05D007492 2.3e-51 208.0 221 56.1
Lsat_1_v5_gn_1_126941 Lactuca sativa HOM05D004763 ORTHO05D007492 7.3e-50 203.0 147 67.3
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 1.7e-38 165.2 415 33.0
Lsat_1_v5_gn_1_127161 Lactuca sativa HOM05D004763 ORTHO05D007492 1.9e-37 161.8 150 58.7
Aa31LG8G7550 Aethionema arabicum HOM05D004763 ORTHO05D007492 3.2e-37 161.0 468 33.3
PGSC0003DMG400012096 Solanum tuberosum HOM05D004763 ORTHO05D014896 3.3e-34 151.0 86 87.2
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 1.3e-33 149.1 87 82.8
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 1.6e-33 148.7 87 82.8
Ca_01269_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 4.8e-33 147.1 86 88.4
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 1.4e-32 145.6 87 81.6
Thecc.03G073800 Theobroma cacao HOM05D004763 ORTHO05D019264 1.4e-29 135.6 107 63.6
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 9.3e-29 132.9 79 88.6
PGSC0003DMG400026817 Solanum tuberosum HOM05D004763 ORTHO05D026177 3.5e-28 131.0 81 85.2
Sopen04g015550 Solanum pennellii HOM05D000004 ORTHO05D000002 1.6e-25 122.1 96 72.9
Solyc11g028310.3 Solanum lycopersicum HOM05D004763 ORTHO05D026177 2.3e-19 101.7 62 87.1
Lsat_1_v5_gn_3_118680 Lactuca sativa HOM05D004763 ORTHO05D007492 6.7e-19 100.1 55 87.3
arahy.Tifrunner.gnm1.ann1.50I1V9 Arachis hypogaea HOM05D004763 ORTHO05D014896 5.7e-18 97.1 68 76.5
arahy.Tifrunner.gnm1.ann1.F7UR4V Arachis hypogaea HOM05D004763 ORTHO05D014896 1.3e-17 95.9 68 75.0
Lju1319A4T14 Lonicera japonica HOM05D004763 ORTHO05D019264 1.3e-17 95.9 54 85.2
arahy.Tifrunner.gnm1.ann1.G1IAFF Arachis hypogaea HOM05D004763 ORTHO05D014896 1.4e-16 92.4 82 62.2
Solyc12g036030.1 Solanum lycopersicum HOM05D004763 ORTHO05D026177 4.1e-16 90.9 104 52.9
TWI60G1170 Tripterygium wilfordii HOM05D004763 ORTHO05D014896 2.2e-14 85.1 49 85.7
arahy.Tifrunner.gnm1.ann1.65KXHR Arachis hypogaea HOM05D004763 ORTHO05D014896 2.9e-14 84.7 49 87.8
Lsat_1_v5_gn_1_125620 Lactuca sativa HOM05D004763 ORTHO05D007492 2.9e-14 84.7 197 34.0
Lsat_1_v5_gn_1_126960 Lactuca sativa HOM05D004763 ORTHO05D012314 9.3e-13 79.7 68 54.4
PGSC0003DMG402017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 2.7e-12 78.2 45 91.1
arahy.Tifrunner.gnm1.ann1.YT3XVJ Arachis hypogaea HOM05D012186 ORTHO05D009594 3.0e-11 74.7 98 51.0
Solyc11g028340.3 Solanum lycopersicum HOM05D004763 ORTHO05D019264 1.1e-10 72.8 43 83.7
PGSC0003DMG400019106 Solanum tuberosum HOM05D004763 ORTHO05D007492 7.4e-10 70.1 37 86.5
Aa31LG8G7540 Aethionema arabicum HOM05D004763 ORTHO05D007492 1.3e-09 69.3 66 51.5
Solyc11g028350.1 Solanum lycopersicum HOM05D004763 ORTHO05D019264 6.3e-09 67.0 40 82.5
Solyc11g028330.2 Solanum lycopersicum HOM05D004763 ORTHO05D019264 3.4e-07 61.2 42 71.4
Lsat_1_v5_gn_8_146221 Lactuca sativa HOM05D004763 ORTHO05D014896 1.7e-06 58.9 33 87.9
RcHm_v2.0_Chr3g0472751 Rosa chinensis HOM05D004763 ORTHO05D344474 2.2e-06 58.5 38 78.9


User provided reference genes

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