Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0027668 Sechium edule HOM05D007027 ORTHO05D008765 1.8e-164 582.4 280 100.0
CsaV3_5G029790 Cucumis sativus L. HOM05D007027 ORTHO05D008765 6.2e-136 487.6 297 82.2
MELO3C011820.2 Cucumis melo HOM05D007027 ORTHO05D008765 4.2e-132 474.9 314 77.7
FAN25G1584 Fragaria x ananassa HOM05D007027 ORTHO05D008765 1.1e-111 407.1 299 68.9
FvH4_3g33250 Fragaria vesca HOM05D007027 ORTHO05D008765 3.1e-111 405.6 300 68.7
FAN11G0675 Fragaria x ananassa HOM05D007027 ORTHO05D008765 4.0e-111 405.2 300 68.7
RcHm_v2.0_Chr5g0060601 Rosa chinensis HOM05D007027 ORTHO05D008765 6.9e-111 404.4 299 69.6
CiPaw.06G173600 Carya illinoinensis HOM05D007027 ORTHO05D008765 4.5e-110 401.7 318 65.7
Cfa004487 Carpinus fangiana HOM05D007027 ORTHO05D008765 5.8e-110 401.4 326 65.6
Duzib132G0056 Durio zibethinus HOM05D007027 ORTHO05D008765 5.8e-110 401.4 320 64.4
PGR142G1179 Punica granatum HOM05D007027 ORTHO05D008765 7.6e-110 401.0 312 64.1
CiPaw.05G004800 Carya illinoinensis HOM05D007027 ORTHO05D008765 1.0e-109 400.6 318 65.1
Cpa.g.sc113.45 Carica papaya HOM05D007027 ORTHO05D008765 2.2e-109 399.4 321 64.8
FAN16G3401 Fragaria x ananassa HOM05D007027 ORTHO05D008765 2.9e-109 399.1 302 67.5
Gohir.A01G183800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 2.5e-108 396.0 303 67.3
MD08G1241400 Malus domestica HOM05D007027 ORTHO05D008765 4.2e-108 395.2 309 66.3
MD15G1435400 Malus domestica HOM05D007027 ORTHO05D008765 1.6e-107 393.3 307 65.5
Gohir.D01G174800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 2.1e-107 392.9 318 64.2
Gorai.002G216900 Gossypium raimondii HOM05D007027 ORTHO05D008765 6.0e-107 391.3 304 66.1
CAN.G855.3 Capsicum annuum HOM05D007027 ORTHO05D008765 1.0e-106 390.6 318 62.9
Nn5g27423 Nelumbo nucifera HOM05D007027 ORTHO05D008765 1.0e-106 390.6 311 64.6
Manes.07G024000 Manihot esculenta HOM05D007027 ORTHO05D008765 1.8e-106 389.8 323 62.5
THA.LOC104816809 Tarenaya hassleriana HOM05D007027 ORTHO05D008765 3.9e-106 388.7 317 62.8
QL02p100436 Quercus lobata HOM05D007027 ORTHO05D008765 6.7e-106 387.9 323 62.2
PGSC0003DMG400024892 Solanum tuberosum HOM05D007027 ORTHO05D008765 6.7e-106 387.9 324 60.8
Solyc01g103560.3 Solanum lycopersicum HOM05D007027 ORTHO05D008765 8.7e-106 387.5 325 61.2
CSS0028981 Camellia sinensis var. sinensis HOM05D007027 ORTHO05D008765 1.5e-105 386.7 322 63.0
GSVIVG01023249001 Vitis vinifera HOM05D007027 ORTHO05D008765 1.9e-105 386.3 316 64.6
CANSAT54G3047 Cannabis sativa HOM05D007027 ORTHO05D008765 3.3e-105 385.6 308 61.4
arahy.Tifrunner.gnm1.ann1.BAUB6M Arachis hypogaea HOM05D007027 ORTHO05D008765 7.4e-105 384.4 305 63.6
Nitab4.5_0004106g0030 Nicotiana tabacum HOM05D007027 ORTHO05D008765 9.6e-105 384.0 325 60.9
Nitab4.5_0000787g0210 Nicotiana tabacum HOM05D007027 ORTHO05D008765 1.3e-104 383.6 325 60.6
arahy.Tifrunner.gnm1.ann1.3G44QY Arachis hypogaea HOM05D007027 ORTHO05D008765 3.7e-104 382.1 305 63.3
Sopen01g045910 Solanum pennellii HOM05D007027 ORTHO05D008765 6.2e-104 381.3 325 60.3
Eucgr.I02764 Eucalyptus grandis HOM05D007027 ORTHO05D008765 1.8e-103 379.8 251 71.7
Actinidia00176 Actinidia chinensis HOM05D007027 ORTHO05D008765 6.9e-103 377.9 280 67.9
Oeu064602.3 Olea europaea HOM05D007027 ORTHO05D008765 1.5e-102 376.7 277 67.1
Atru.chr6.497 Acer truncatum HOM05D007027 ORTHO05D008765 2.0e-102 376.3 308 61.7
Glyma.16G003100 Glycine max HOM05D007027 ORTHO05D008765 2.6e-102 375.9 316 62.7
A06p06480 Brassica napus HOM05D007027 ORTHO05D008765 3.4e-102 375.6 306 63.7
Glyma.12G167000 Glycine max HOM05D007027 ORTHO05D008765 3.4e-102 375.6 315 63.2
TAR381G1092 Trochodendron aralioides HOM05D007027 ORTHO05D008765 7.6e-102 374.4 292 65.4
AT1G09800 Arabidopsis thaliana HOM05D007027 ORTHO05D008765 2.2e-101 372.9 320 61.9
BcaC05g24848 Brassica carinata HOM05D007027 ORTHO05D008765 2.2e-101 372.9 311 62.1
Lalb_Chr20g0123691 Lupinus albus HOM05D007027 ORTHO05D008765 2.9e-101 372.5 306 60.8
C05p07890 Brassica napus HOM05D007027 ORTHO05D008765 6.5e-101 371.3 293 64.8
BolC5t29540H Brassica oleracea HOM05D007027 ORTHO05D008765 6.5e-101 371.3 293 64.8
BraA06t23859Z Brassica rapa HOM05D007027 ORTHO05D008765 6.5e-101 371.3 306 63.1
Carub.0001s0916 Capsella rubella HOM05D007027 ORTHO05D008765 1.9e-100 369.8 318 61.6
Dinv07482 Davidia involucrata HOM05D007027 ORTHO05D008765 1.9e-100 369.8 282 66.3
Thhalv10007981m.g Eutrema salsugineum HOM05D007027 ORTHO05D008765 2.5e-100 369.4 266 68.8
Medtr2g005830 Medicago truncatula HOM05D007027 ORTHO05D008765 3.2e-100 369.0 305 62.3
HanXRQChr09g0249131 Helianthus annuus HOM05D007027 ORTHO05D008765 7.1e-100 367.9 306 63.1
Prupe.1G579000 Prunus persica HOM05D007027 ORTHO05D008765 7.1e-100 367.9 311 62.4
Thecc.02G018500 Theobroma cacao HOM05D007027 ORTHO05D008765 9.3e-100 367.5 259 70.7
VMungo0540G1081 Vigna mungo HOM05D007027 ORTHO05D008765 9.3e-100 367.5 316 61.1
SGA_v2.0_scaffold304G47919 Striga asiatica HOM05D007027 ORTHO05D008765 1.6e-99 366.7 320 59.1
DCAR_006671 Daucus carota HOM05D007027 ORTHO05D008765 2.7e-99 365.9 313 59.7
Haze_10044 Corylus avellana HOM05D007027 ORTHO05D008765 3.5e-99 365.5 426 50.5
Cc02_g23170 Coffea canephora HOM05D007027 ORTHO05D008765 6.1e-99 364.8 307 61.2
Lj5C266T4 Lonicera japonica HOM05D007027 ORTHO05D008765 6.1e-99 364.8 294 63.9
Aqoxy3G00475 Aquilegia oxysepala HOM05D007027 ORTHO05D008765 7.9e-99 364.4 300 62.0
Hund15459 Selenicereus undatus HOM05D007027 ORTHO05D008765 1.0e-98 364.0 295 62.7
EL10Ac6g14111 Beta vulgaris HOM05D007027 ORTHO05D008765 1.3e-98 363.6 309 62.1
Psat1g222360 Pisum sativum HOM05D007027 ORTHO05D008765 1.3e-98 363.6 280 66.4
TPR.G2122 Trifolium pratense HOM05D007027 ORTHO05D008765 1.3e-98 363.6 308 61.7
C08p49260 Brassica napus HOM05D007027 ORTHO05D008765 2.3e-98 362.8 267 67.0
BolC8t52461H Brassica oleracea HOM05D007027 ORTHO05D008765 2.3e-98 362.8 267 67.0
Ca_00043_v3 Cicer arietinum L. HOM05D007027 ORTHO05D008765 3.0e-98 362.5 280 66.1
CARHR009790 Cardamine hirsuta HOM05D007027 ORTHO05D008765 3.9e-98 362.1 295 61.4
Sp1g08410 Schrenkiella parvula HOM05D007027 ORTHO05D008765 3.9e-98 362.1 298 61.7
Potri.003G008500 Populus trichocarpa HOM05D007027 ORTHO05D008765 1.1e-97 360.5 315 60.0
ClCG11G013270 Citrullus lanatus HOM05D007027 ORTHO05D008765 1.5e-97 360.1 286 68.9
A09p65310 Brassica napus HOM05D007027 ORTHO05D008765 2.5e-97 359.4 267 65.9
ECA233G3768 Erigeron canadensis HOM05D007027 ORTHO05D008765 2.5e-97 359.4 289 63.3
SalBow7G1849 Salvia bowleyana HOM05D007027 ORTHO05D008765 3.3e-97 359.0 304 61.5
Sabra03G0004200 Salix brachista HOM05D007027 ORTHO05D008765 5.7e-97 358.2 327 57.2
ATR1136G089 Amborella trichopoda HOM05D007027 ORTHO05D008765 9.7e-97 357.5 268 67.5
Migut.B00775 Erythranthe guttata HOM05D007027 ORTHO05D008765 1.6e-96 356.7 268 66.4
MBI03_g18680_MAGBIO Magnolia biondii HOM05D007027 ORTHO05D008765 2.8e-96 355.9 331 56.8
AL1G20380 Arabidopsis lyrata HOM05D007027 ORTHO05D008765 6.3e-96 354.8 352 56.0
unitig_699.g19848 Utricularia gibba HOM05D007027 ORTHO05D008765 3.1e-95 352.4 303 59.7
Rhsim11G0122600 Rhododendron simsii HOM05D007027 ORTHO05D008765 9.0e-95 350.9 316 58.5
FAN21G1550 Fragaria x ananassa HOM05D007027 ORTHO05D008765 3.4e-94 349.0 302 61.9
Ciclev10001491m.g Citrus clementina HOM05D007027 ORTHO05D008765 4.5e-94 348.6 269 64.7
Os12g0194800 Oryza sativa ssp. japonica HOM05D007027 ORTHO05D008765 5.9e-94 348.2 284 63.0
TWI23G0132 Tripterygium wilfordii HOM05D007027 ORTHO05D008765 8.8e-90 334.3 333 55.9
Zm00001eb138750 Zea mays HOM05D007027 ORTHO05D008765 1.5e-89 333.6 305 59.0
Lj6g0019688 Lotus japonicus HOM05D007027 ORTHO05D008765 8.2e-88 327.8 300 58.3
Lj6g0023928 Lotus japonicus HOM05D007027 ORTHO05D008765 8.2e-88 327.8 300 58.3
PSO017G0894 Papaver somniferum HOM05D007027 ORTHO05D008765 1.1e-87 327.4 333 53.8
PSO170G1275 Papaver somniferum HOM05D007027 ORTHO05D008765 1.1e-87 327.4 330 54.2
Sc07g0005100 Simmondsia chinensis HOM05D007027 ORTHO05D008765 1.8e-87 326.6 253 64.8
BcaC07g41859 Brassica carinata HOM05D007027 ORTHO05D008765 3.4e-86 322.4 269 61.7
COL.COLO4_17723 Corchorus olitorius HOM05D007027 ORTHO05D008765 7.7e-86 321.2 277 60.3
Phvul.006G218900 Phaseolus vulgaris HOM05D007027 ORTHO05D008765 1.3e-85 320.5 257 63.4
Pp3c1_13020 Physcomitrium patens HOM05D007027 ORTHO05D008765 9.4e-84 314.3 259 60.6
AUR62043952 Chenopodium quinoa HOM05D007027 ORTHO05D008765 5.1e-82 308.5 257 62.3
vmacro01711 Vaccinium macrocarpon HOM05D007027 ORTHO05D008765 5.1e-82 308.5 361 49.9
Mapoly0016s0042 Marchantia polymorpha HOM05D007027 ORTHO05D008765 5.7e-81 305.1 300 54.0
HPP92_013441 Vanilla planifolia HOM05D007027 ORTHO05D008765 6.5e-77 291.6 176 76.1
SMO118G0354 Selaginella moellendorffii HOM05D007027 ORTHO05D008765 4.7e-75 285.4 242 59.1
HPP92_013442 Vanilla planifolia HOM05D007027 ORTHO05D008765 1.7e-69 266.9 242 57.9
Aa31LG1G5150 Aethionema arabicum HOM05D007027 ORTHO05D008765 2.0e-65 253.4 221 59.7
CBR_g30061 Chara braunii HOM05D007027 ORTHO05D008765 4.4e-65 252.3 193 61.7
CDE05G2927 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 1.3e-56 224.2 178 62.9
Lsat_1_v5_gn_9_120240 Lactuca sativa HOM05D007027 ORTHO05D008765 3.1e-55 219.5 153 71.2
MCO02G420 Micromonas commoda HOM05D007027 ORTHO05D008765 1.4e-42 177.6 277 41.2
Migut.B00774 Erythranthe guttata HOM05D007027 ORTHO05D008765 7.0e-39 165.2 154 58.4
AUR62028254 Chenopodium quinoa HOM05D007027 ORTHO05D008765 1.2e-38 164.5 130 60.8
RcHm_v2.0_Chr3g0481081 Rosa chinensis HOM05D007027 ORTHO05D008765 5.4e-31 139.0 79 84.8
Peaxi162Scf00011g01224 Petunia axillaris HOM05D007027 ORTHO05D008765 2.2e-24 117.1 147 45.6
CDE05G0566 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 1.6e-22 110.9 116 47.4
SMO361G0559 Selaginella moellendorffii HOM05D006708 ORTHO05D008321 1.1e-20 104.8 206 33.0
HanXRQChr10g0293331 Helianthus annuus HOM05D006708 ORTHO05D008321 1.5e-17 94.4 198 33.3
Lsat_1_v5_gn_1_39980 Lactuca sativa HOM05D006708 ORTHO05D008321 2.0e-17 94.0 201 32.8
SalBow2G2621 Salvia bowleyana HOM05D006708 ORTHO05D008321 7.6e-17 92.0 221 29.9
AagrBONN_evm.TU.Sc2ySwM_228.1603 Anthoceros agrestis HOM05D006708 ORTHO05D008321 9.9e-17 91.7 207 30.9
Mapoly0209s0002 Marchantia polymorpha HOM05D006708 ORTHO05D008321 1.3e-16 91.3 186 32.3
Rhsim12G0000100 Rhododendron simsii HOM05D006708 ORTHO05D007921 2.2e-16 90.5 205 29.8
Solyc05g053190.3 Solanum lycopersicum HOM05D006708 ORTHO05D008321 4.9e-16 89.4 194 31.4
Sopen05g031700 Solanum pennellii HOM05D006708 ORTHO05D008321 8.4e-16 88.6 197 31.0
Ca_21374_v3 Cicer arietinum L. HOM05D006708 ORTHO05D008321 1.4e-15 87.8 199 29.1
Pp3c21_5420 Physcomitrium patens HOM05D006708 ORTHO05D008321 1.4e-15 87.8 178 31.5
PGSC0003DMG400027203 Solanum tuberosum HOM05D006708 ORTHO05D008321 1.4e-15 87.8 194 30.4
SGA_v2.0_scaffold109G31012 Striga asiatica HOM05D006708 ORTHO05D008321 1.9e-15 87.4 197 30.5
Lj6A702T41 Lonicera japonica HOM05D006708 ORTHO05D008321 2.4e-15 87.0 197 29.9
Lj4g0015836 Lotus japonicus HOM05D006708 ORTHO05D008321 2.4e-15 87.0 199 28.6
Manes.03G212000 Manihot esculenta HOM05D006708 ORTHO05D008321 3.2e-15 86.7 204 26.5
TPR.G12542 Trifolium pratense HOM05D006708 ORTHO05D008321 4.2e-15 86.3 205 29.3
Medtr4g123970 Medicago truncatula HOM05D006708 ORTHO05D008321 5.4e-15 85.9 225 27.1
COL.COLO4_34511 Corchorus olitorius HOM05D006708 ORTHO05D008321 7.1e-15 85.5 199 27.6
Nn3g21927 Nelumbo nucifera HOM05D006708 ORTHO05D008321 1.2e-14 84.7 217 29.5
Migut.A01089 Erythranthe guttata HOM05D006708 ORTHO05D008321 1.6e-14 84.3 188 29.8
Prupe.1G104700 Prunus persica HOM05D006708 ORTHO05D008321 2.1e-14 84.0 216 26.4
RcHm_v2.0_Chr4g0427681 Rosa chinensis HOM05D006708 ORTHO05D008321 2.1e-14 84.0 201 26.9
VMungo1215G1693 Vigna mungo HOM05D006708 ORTHO05D008321 2.1e-14 84.0 201 27.9
FAN12G1816 Fragaria x ananassa HOM05D006708 ORTHO05D008321 3.5e-14 83.2 198 26.8
Oeu022711.1 Olea europaea HOM05D006708 ORTHO05D008321 3.5e-14 83.2 195 27.2
CSS0037344 Camellia sinensis var. sinensis HOM05D006708 ORTHO05D008321 4.6e-14 82.8 199 26.1
CAN.G305.34 Capsicum annuum HOM05D006708 ORTHO05D008321 4.6e-14 82.8 196 30.1
Eucgr.B03960 Eucalyptus grandis HOM05D006708 ORTHO05D008321 4.6e-14 82.8 212 27.8
Gohir.A02G058800 Gossypium hirsutum HOM05D006708 ORTHO05D008321 4.6e-14 82.8 197 26.4
Gorai.005G073000 Gossypium raimondii HOM05D006708 ORTHO05D008321 4.6e-14 82.8 197 26.4
ATR0796G062 Amborella trichopoda HOM05D006708 ORTHO05D008321 6.0e-14 82.4 214 27.1
THA.LOC104802685 Tarenaya hassleriana HOM05D006708 ORTHO05D008321 6.0e-14 82.4 199 28.1
MCO13G233 Micromonas commoda HOM05D006708 ORTHO05D008321 7.8e-14 82.0 195 30.8
Actinidia02537 Actinidia chinensis HOM05D006708 ORTHO05D008321 1.0e-13 81.6 241 27.0
FvH4_4g21570 Fragaria vesca HOM05D006708 ORTHO05D008321 1.0e-13 81.6 198 26.8
Hma1.2p1_0013F.1_g007850 Hydrangea macrophylla HOM05D006708 ORTHO05D008321 1.0e-13 81.6 197 27.9
Thecc.04G313500 Theobroma cacao HOM05D006708 ORTHO05D008321 1.0e-13 81.6 199 27.1
Cpa.g.sc146.18 Carica papaya HOM05D006708 ORTHO05D008321 1.3e-13 81.3 205 27.8
FAN17G2628 Fragaria x ananassa HOM05D006708 ORTHO05D008321 1.3e-13 81.3 225 27.1
Phvul.003G122200 Phaseolus vulgaris HOM05D006708 ORTHO05D008321 1.3e-13 81.3 199 28.1
Dinv29501 Davidia involucrata HOM05D006708 ORTHO05D008321 2.3e-13 80.5 197 27.9
CSS0031150 Camellia sinensis var. sinensis HOM05D006708 ORTHO05D008321 3.0e-13 80.1 199 25.6
CANSAT64G0974 Cannabis sativa HOM05D006708 ORTHO05D008321 3.0e-13 80.1 200 27.5
Duzib151G0010 Durio zibethinus HOM05D006708 ORTHO05D008321 3.0e-13 80.1 199 25.6
FAN07G1828 Fragaria x ananassa HOM05D006708 ORTHO05D008321 3.0e-13 80.1 175 28.6
Atru.chr4.3165 Acer truncatum HOM05D006708 ORTHO05D008321 3.9e-13 79.7 199 26.6
Hund22645 Selenicereus undatus HOM05D006708 ORTHO05D008321 3.9e-13 79.7 186 29.6
Potri.008G206200 Populus trichocarpa HOM05D006708 ORTHO05D008321 5.1e-13 79.3 199 27.6
Sabra08G0153200 Salix brachista HOM05D006708 ORTHO05D008321 5.1e-13 79.3 231 26.4
Glyma.17G041000 Glycine max HOM05D006708 ORTHO05D008321 6.6e-13 79.0 201 27.4
GSVIVG01017693001 Vitis vinifera HOM05D006708 ORTHO05D008321 6.6e-13 79.0 199 27.1
Cc03_g00080 Coffea canephora HOM05D006708 ORTHO05D008321 8.7e-13 78.6 197 26.4
MD13G1140300 Malus domestica HOM05D006708 ORTHO05D008321 8.7e-13 78.6 202 26.2
Peaxi162Scf00164g00315 Petunia axillaris HOM05D006708 ORTHO05D008321 8.7e-13 78.6 197 27.9
TAR365G0272 Trochodendron aralioides HOM05D006708 ORTHO05D008321 1.5e-12 77.8 197 27.9
HPP92_001944 Vanilla planifolia HOM05D006708 ORTHO05D008321 2.5e-12 77.0 210 28.1
ECA233G5482 Erigeron canadensis HOM05D006708 ORTHO05D008321 3.3e-12 76.6 185 33.5
Gohir.D02G064500 Gossypium hirsutum HOM05D006708 ORTHO05D008321 3.3e-12 76.6 197 25.4
CiPaw.01G128700 Carya illinoinensis HOM05D006708 ORTHO05D008321 7.3e-12 75.5 197 26.4
Cre13.g591501 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 7.3e-12 75.5 202 28.2
Aqoxy2G02504 Aquilegia oxysepala HOM05D006708 ORTHO05D008321 9.6e-12 75.1 235 25.5
TWI53G0094 Tripterygium wilfordii HOM05D006708 ORTHO05D008321 1.3e-11 74.7 199 28.1
Cre09.g405150 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 4.8e-11 72.8 201 32.3
CBR_g55386 Chara braunii HOM05D006708 ORTHO05D008321 2.4e-10 70.5 200 30.0
SEGI_32206 Sequoiadendron giganteum HOM05D006708 ORTHO05D008321 2.9e-08 63.5 73 41.1
unitig_1.g29359 Utricularia gibba HOM05D006708 ORTHO05D008321 4.9e-08 62.8 100 32.0
unitig_747.g22054 Utricularia gibba HOM05D006708 ORTHO05D008321 4.9e-08 62.8 100 32.0


User provided reference genes

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