Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 4.0e-290 1000.7 509 100.0
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 5.1e-245 850.9 513 85.6
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 7.6e-241 837.0 513 85.0
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 6.2e-235 817.4 512 83.2
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 2.4e-210 735.7 502 77.5
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 7.4e-188 661.0 505 69.5
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 9.7e-188 660.6 518 69.1
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 9.1e-186 654.1 520 67.7
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 2.0e-185 652.9 527 67.7
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 1.7e-184 649.8 518 67.8
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 1.4e-183 646.7 519 66.9
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 7.2e-183 644.4 526 65.8
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 6.1e-182 641.3 517 67.1
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 6.1e-182 641.3 517 67.3
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 6.1e-182 641.3 517 67.3
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 2.8e-179 632.5 516 66.3
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 3.1e-178 629.0 518 66.4
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 5.3e-178 628.2 523 63.9
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 1.6e-177 626.7 526 63.9
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 1.7e-176 623.2 507 65.5
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 4.2e-175 618.6 530 64.2
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 4.2e-175 618.6 522 65.7
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 7.2e-175 617.8 515 65.6
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 1.2e-174 617.1 531 63.5
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 1.6e-174 616.7 522 64.0
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 4.7e-174 615.1 506 64.8
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 6.1e-174 614.8 504 66.7
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 5.2e-173 611.7 527 63.8
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 8.8e-173 610.9 516 63.6
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 1.7e-171 606.7 511 65.4
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.8e-171 605.9 515 63.3
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 3.7e-171 605.5 514 63.2
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 6.3e-171 604.7 515 63.3
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 1.1e-170 604.0 514 61.9
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 1.1e-170 604.0 516 63.8
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 2.4e-170 602.8 510 62.5
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 2.4e-170 602.8 526 61.8
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 2.4e-170 602.8 519 64.2
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 3.1e-170 602.4 504 63.9
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 4.1e-170 602.1 512 62.7
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 4.1e-170 602.1 515 62.9
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 1.6e-169 600.1 526 61.8
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.0e-169 599.7 515 62.5
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.0e-169 599.7 515 62.5
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 2.0e-169 599.7 515 62.5
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 2.7e-169 599.4 523 62.0
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.7e-169 599.4 515 62.7
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 4.5e-169 598.6 534 62.4
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 4.5e-169 598.6 525 62.1
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 2.2e-168 596.3 509 63.7
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 2.9e-168 595.9 505 62.4
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 2.9e-168 595.9 505 62.4
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 6.5e-168 594.7 512 62.7
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 1.5e-167 593.6 508 62.8
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 3.2e-167 592.4 507 63.3
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 1.6e-166 590.1 510 62.4
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 3.6e-166 589.0 529 61.6
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 1.4e-165 587.0 518 62.0
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 1.8e-165 586.6 505 62.6
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 2.3e-165 586.3 505 61.4
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 5.2e-165 585.1 505 63.0
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 5.2e-165 585.1 530 61.5
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 8.8e-165 584.3 525 62.3
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 1.5e-164 583.6 526 62.0
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 2.0e-164 583.2 507 62.1
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 5.7e-164 581.6 506 62.5
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 9.8e-164 580.9 507 62.9
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 1.7e-163 580.1 524 60.3
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 2.8e-163 579.3 527 60.7
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 8.3e-163 577.8 523 60.4
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 1.1e-162 577.4 521 60.3
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 1.8e-162 576.6 516 60.9
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 3.1e-162 575.9 515 59.8
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 4.1e-162 575.5 524 60.1
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 9.1e-162 574.3 515 60.2
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 9.1e-162 574.3 516 60.9
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 2.0e-161 573.2 505 60.8
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 5.9e-161 571.6 510 60.8
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 5.9e-161 571.6 523 59.7
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 7.7e-161 571.2 505 60.6
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 7.7e-161 571.2 505 60.6
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 1.0e-160 570.9 502 62.2
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 2.3e-160 569.7 509 63.1
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 1.5e-159 567.0 519 60.9
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 4.2e-159 565.5 533 61.0
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 7.2e-159 564.7 504 61.3
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 1.2e-158 563.9 515 60.8
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 1.2e-158 563.9 523 59.3
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 3.6e-158 562.4 524 59.4
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 1.8e-157 560.1 502 60.2
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 1.8e-157 560.1 502 59.4
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 4.0e-157 558.9 505 60.0
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 1.5e-156 557.0 505 59.8
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 2.0e-156 556.6 508 61.0
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 2.0e-156 556.6 521 59.1
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 5.7e-156 555.1 524 58.8
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 9.8e-156 554.3 525 60.4
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 9.2e-154 547.7 504 60.1
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 2.7e-153 546.2 504 59.1
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 1.4e-149 533.9 522 56.7
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 8.9e-149 531.2 508 57.9
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 1.1e-146 524.2 524 56.7
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 9.8e-140 501.1 519 56.3
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 4.9e-139 498.8 505 54.9
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 5.4e-138 495.4 508 54.5
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 4.7e-134 482.3 457 61.1
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 1.4e-133 480.7 533 52.0
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 2.9e-131 473.0 506 53.0
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 1.9e-130 470.3 441 60.5
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 4.6e-129 465.7 426 63.4
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 2.8e-126 456.4 512 52.1
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 8.4e-123 444.9 502 51.8
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 1.2e-121 441.0 519 49.7
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 2.7e-121 439.9 505 49.9
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 1.5e-119 434.1 510 48.8
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 6.9e-117 425.2 509 50.9
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 1.7e-115 420.6 557 44.2
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 2.7e-113 413.3 478 49.6
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 6.6e-112 408.7 397 58.9
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 8.7e-112 408.3 414 54.3
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 1.9e-103 380.6 425 53.6
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 4.6e-97 359.4 339 60.8
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 9.0e-93 345.1 275 63.3
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 3.4e-92 343.2 375 55.5
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 1.4e-85 321.2 553 39.6
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 6.7e-80 302.4 545 39.6
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 6.1e-73 279.3 418 45.0
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.5e-71 274.6 337 51.9
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.3e-71 273.5 327 52.0
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 1.8e-69 267.7 553 35.4
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 3.2e-66 256.9 148 76.4
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 4.2e-66 256.5 503 35.4
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 2.3e-56 224.2 180 63.3
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 4.8e-54 216.5 339 45.1
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 3.1e-53 213.8 275 48.7
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 1.2e-52 211.8 275 48.0
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 1.1e-50 205.3 275 47.6
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 1.4e-48 198.4 168 59.5
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 3.7e-46 190.3 709 29.2
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 1.6e-44 184.9 334 41.0
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 4.5e-44 183.3 141 67.4
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 1.5e-34 151.8 255 42.4
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 9.2e-29 132.5 516 26.9
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 2.3e-27 127.9 505 26.9
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 7.1e-21 106.3 83 65.1
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 9.2e-21 105.9 76 65.8
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 7.8e-20 102.8 472 26.3
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 1.1e-18 99.0 256 34.8
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 1.7e-14 85.1 91 54.9
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 1.7e-14 85.1 78 53.8
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 1.7e-14 85.1 56 71.4
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 8.3e-14 82.8 48 79.2
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 1.8e-08 65.1 70 55.7
Sopen12g007660 Solanum pennellii HOM05D000006 ORTHO05D000695 6.8e-08 63.2 37 78.4
arahy.Tifrunner.gnm1.ann1.CCN99U Arachis hypogaea HOM05D004635 ORTHO05D085572 3.4e-07 60.8 45 64.4


User provided reference genes

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