Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 0.0e+00 1126.7 571 100.0
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 1.6e-255 885.9 618 75.9
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 3.0e-254 881.7 616 75.5
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 8.2e-244 847.0 620 73.5
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 2.0e-210 736.1 502 77.5
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 3.4e-205 718.8 606 64.2
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 2.0e-202 709.5 620 63.1
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 1.5e-200 703.4 614 63.0
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 5.2e-198 694.9 609 63.7
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 1.1e-195 687.2 623 59.9
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 1.4e-195 686.8 632 60.6
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 1.9e-195 686.4 630 60.0
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 9.2e-195 684.1 620 61.3
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 9.2e-195 684.1 629 60.1
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 1.2e-194 683.7 609 61.9
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 1.2e-194 683.7 616 62.2
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 1.2e-194 683.7 617 61.3
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 3.5e-194 682.2 623 60.8
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 1.3e-193 680.2 615 60.5
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 1.3e-193 680.2 619 60.9
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 5.0e-193 678.3 632 60.6
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 5.0e-193 678.3 631 60.2
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 1.5e-192 676.8 625 60.3
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 1.2e-191 673.7 580 62.6
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 4.7e-191 671.8 626 60.7
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 9.8e-189 664.1 637 59.2
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 2.9e-188 662.5 613 58.2
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 3.7e-188 662.1 620 61.0
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 8.3e-188 661.0 632 58.9
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 4.1e-187 658.7 609 59.9
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.3e-185 652.9 607 59.0
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.0e-185 652.5 606 59.2
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 5.1e-185 651.7 606 59.2
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 6.6e-185 651.4 606 59.1
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 8.6e-185 651.0 606 59.1
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 8.6e-185 651.0 601 59.9
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 1.1e-184 650.6 624 58.8
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 2.8e-183 646.0 571 61.3
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 8.1e-183 644.4 629 57.9
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 1.5e-181 640.2 633 57.2
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 9.9e-181 637.5 605 60.3
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 1.7e-180 636.7 594 57.7
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 1.1e-179 634.0 629 54.8
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 1.4e-179 633.6 615 57.2
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 1.4e-179 633.6 595 60.7
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 1.4e-179 633.6 603 60.2
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 4.1e-179 632.1 629 55.8
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 5.4e-179 631.7 632 58.4
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 9.2e-179 630.9 606 57.8
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 1.2e-178 630.6 599 58.3
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 4.6e-178 628.6 595 60.0
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 1.3e-177 627.1 611 55.8
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 1.3e-177 627.1 608 55.6
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 1.3e-177 627.1 605 57.5
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 5.1e-177 625.2 610 57.2
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 1.1e-176 624.0 605 56.5
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 1.1e-176 624.0 606 57.8
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 1.9e-176 623.2 628 57.6
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 3.3e-176 622.5 623 56.8
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 5.6e-176 621.7 601 56.2
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 5.6e-176 621.7 632 57.3
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 7.3e-176 621.3 616 56.2
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 7.3e-176 621.3 634 54.1
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 1.2e-175 620.5 605 59.0
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 2.8e-175 619.4 611 57.3
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 2.8e-175 619.4 628 57.2
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 1.1e-174 617.5 615 58.0
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 1.4e-174 617.1 606 57.9
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 2.4e-174 616.3 583 58.3
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 2.4e-174 616.3 592 55.9
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 2.4e-174 616.3 592 55.9
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 5.2e-174 615.1 585 59.1
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 8.9e-174 614.4 633 55.0
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 2.0e-173 613.2 603 54.7
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 2.6e-173 612.8 592 57.1
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 2.6e-173 612.8 590 58.3
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 3.4e-173 612.5 618 57.6
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 2.2e-172 609.8 626 55.9
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 6.4e-172 608.2 630 54.6
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 8.4e-172 607.8 617 54.5
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 1.1e-171 607.4 609 56.7
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 2.4e-171 606.3 633 54.5
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 3.2e-171 605.9 607 57.3
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 1.2e-170 604.0 582 57.4
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 7.8e-170 601.3 590 55.8
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 1.7e-169 600.1 590 55.8
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 1.7e-169 600.1 590 55.8
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 2.3e-169 599.7 624 53.8
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 3.0e-169 599.4 590 55.6
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 8.7e-169 597.8 583 55.9
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 1.9e-168 596.7 591 57.0
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 4.3e-168 595.5 578 55.5
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 5.6e-168 595.1 595 57.3
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 2.1e-167 593.2 590 55.8
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 8.1e-167 591.3 590 55.3
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 1.4e-166 590.5 590 55.1
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 4.9e-164 582.0 627 53.3
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 6.4e-164 581.6 591 55.7
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 4.2e-163 578.9 588 55.4
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 4.2e-163 578.9 598 55.4
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 7.3e-160 568.2 534 58.6
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 5.8e-157 558.5 579 53.5
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 3.8e-156 555.8 609 51.9
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 3.9e-153 545.8 588 52.6
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 7.4e-152 541.6 529 58.0
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 7.4e-152 541.6 621 50.6
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 3.3e-144 516.2 579 50.4
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 9.0e-142 508.1 543 53.4
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 2.6e-141 506.5 576 50.3
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 1.7e-140 503.8 559 51.3
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 8.7e-137 491.5 577 48.2
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 1.1e-136 491.1 582 50.7
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.7e-132 477.2 501 52.3
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 8.5e-132 474.9 571 49.7
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 1.1e-131 474.6 665 44.1
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 1.1e-118 431.4 609 47.1
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 1.7e-111 407.5 483 50.7
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 6.3e-111 405.6 475 49.5
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 7.0e-110 402.1 481 48.2
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 7.2e-107 392.1 491 50.1
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 3.1e-102 376.7 384 56.0
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 5.4e-102 375.9 364 54.4
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 4.5e-101 372.9 652 38.8
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 2.7e-93 347.1 648 37.2
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 3.8e-92 343.2 396 53.0
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 6.6e-92 342.4 332 59.0
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 2.0e-88 330.9 272 61.0
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 3.5e-85 320.1 565 37.7
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.8e-73 281.2 428 40.9
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 1.6e-66 258.1 538 35.3
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.6e-66 256.9 370 45.9
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.1e-65 255.4 360 45.8
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 2.6e-64 250.8 268 52.6
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 1.9e-62 244.6 143 74.8
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 6.2e-58 229.6 235 54.5
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 2.6e-56 224.2 765 27.7
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 1.4e-54 218.4 433 38.8
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 2.4e-54 217.6 357 41.2
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 1.4e-49 201.8 433 37.4
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 1.7e-47 194.9 190 54.7
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 4.3e-43 180.3 553 28.4
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 6.2e-42 176.4 533 28.9
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 1.8e-41 174.9 151 58.3
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 6.4e-39 166.4 321 38.0
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 6.2e-34 149.8 527 29.0
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 1.7e-31 141.7 218 45.0
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 9.3e-30 136.0 173 41.6
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 2.1e-21 108.2 83 66.3
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 1.1e-17 95.9 247 34.4
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 9.1e-17 92.8 60 70.0
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 6.7e-12 76.6 85 52.9
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 1.7e-10 72.0 81 55.6
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 2.6e-08 64.7 64 53.1
arahy.Tifrunner.gnm1.ann1.CCN99U Arachis hypogaea HOM05D004635 ORTHO05D085572 1.0e-07 62.8 45 64.4


User provided reference genes

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