Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 0.0e+00 3535.3 1809 100.0
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 0.0e+00 2845.1 1694 86.9
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 0.0e+00 2731.1 1828 80.1
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 0.0e+00 2611.3 1494 89.6
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 0.0e+00 2475.7 1802 70.7
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 0.0e+00 2449.9 1810 70.6
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2372.4 1803 68.7
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 0.0e+00 2362.4 1801 68.5
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 0.0e+00 2358.9 1818 68.9
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 0.0e+00 2347.0 1806 68.5
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 0.0e+00 2336.2 1820 67.4
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 0.0e+00 2325.8 1816 67.0
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2317.3 1805 67.6
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 0.0e+00 2306.2 1809 67.8
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 0.0e+00 2299.6 1877 66.0
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 0.0e+00 2292.7 1812 65.9
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 0.0e+00 2291.9 1811 67.2
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 2290.8 1819 66.2
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2282.3 1811 66.8
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 0.0e+00 2275.0 1809 65.7
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 0.0e+00 2273.4 1738 68.4
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 2272.3 1803 65.7
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 0.0e+00 2272.3 1812 67.6
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 0.0e+00 2259.2 1816 66.2
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 0.0e+00 2256.1 1769 66.6
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 0.0e+00 2254.9 1764 66.6
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2250.7 1803 66.4
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 0.0e+00 2249.9 1799 66.5
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 0.0e+00 2249.2 1798 66.7
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2246.9 1799 66.3
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 0.0e+00 2241.8 1701 68.9
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2237.2 1803 66.0
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 2222.6 1807 65.2
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 0.0e+00 2209.5 1884 63.1
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 0.0e+00 2208.3 1803 65.8
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2193.3 1797 65.6
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 0.0e+00 2179.1 1810 63.9
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 2172.9 1793 64.1
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 0.0e+00 2171.0 1802 64.5
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 2161.0 1808 64.1
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 0.0e+00 2159.0 1880 62.8
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 0.0e+00 2157.5 1809 63.0
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 2157.1 1816 63.2
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 2137.5 1819 62.8
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 0.0e+00 2106.3 1804 62.2
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 0.0e+00 2105.9 1820 62.4
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 0.0e+00 2095.5 1860 60.6
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 2093.5 1798 62.3
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 0.0e+00 2088.9 1810 61.7
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 0.0e+00 2083.1 1685 65.0
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 0.0e+00 2078.9 1863 59.4
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 2077.8 1859 59.3
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 2077.8 1859 59.3
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 0.0e+00 2075.4 1852 59.5
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 0.0e+00 2075.1 1735 63.4
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 0.0e+00 2073.5 1864 59.3
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 0.0e+00 2070.8 1787 61.6
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 2069.3 1870 59.1
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 2068.5 1763 62.7
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 2066.6 1838 61.2
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 0.0e+00 2063.9 1874 58.6
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 0.0e+00 2062.0 1811 61.5
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 0.0e+00 2056.2 1774 62.2
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 2052.7 1874 59.1
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 2050.8 1860 58.8
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 2050.8 1860 58.8
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 2049.2 1871 59.0
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 0.0e+00 2048.9 1459 72.6
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 0.0e+00 2045.0 1860 59.0
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 2043.5 1885 58.5
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 0.0e+00 2041.2 1814 60.5
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 0.0e+00 2039.6 1815 60.8
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 0.0e+00 2027.7 1821 60.8
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2016.9 1612 65.7
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 0.0e+00 1992.6 1834 58.3
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1991.5 1528 68.6
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 0.0e+00 1989.9 1734 61.9
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 0.0e+00 1980.7 1879 58.6
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 1971.8 1815 59.9
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 0.0e+00 1969.9 1852 58.3
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1940.6 1690 62.0
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 0.0e+00 1931.8 1560 65.5
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 0.0e+00 1929.8 1837 58.4
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 0.0e+00 1924.4 1876 57.1
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 0.0e+00 1894.0 1866 56.8
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 0.0e+00 1850.1 1644 60.7
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 0.0e+00 1831.6 1533 64.6
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 0.0e+00 1795.8 1725 57.2
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1764.2 1716 57.1
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 1724.1 1355 66.3
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 0.0e+00 1665.6 1568 57.5
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1570.1 1817 50.1
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1565.1 1676 52.3
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1509.6 1448 57.4
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 0.0e+00 1409.8 1829 45.4
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 0.0e+00 1346.3 1846 43.3
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 0.0e+00 1313.5 1780 44.1
Glyma.19G029100 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 1293.1 1011 67.2
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 0.0e+00 1284.6 1768 43.1
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 0.0e+00 1271.5 1007 68.4
Oeu007060.1 Olea europaea HOM05D003939 ORTHO05D005979 0.0e+00 1211.8 1213 55.9
SEGI_00927 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 0.0e+00 1083.9 1098 52.6
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 9.7e-307 1057.7 1008 58.4
CBR_g19320 Chara braunii HOM05D003939 ORTHO05D005979 1.5e-286 990.7 1535 39.7
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 4.0e-276 956.1 980 54.5
TAR371G1006 Trochodendron aralioides HOM05D003939 ORTHO05D005979 2.7e-264 916.8 790 62.5
CARHR197770 Cardamine hirsuta HOM05D003939 ORTHO05D005979 1.9e-254 884.0 647 67.2
CiPaw.03G089600 Carya illinoinensis HOM05D003939 ORTHO05D005979 1.7e-250 870.9 655 69.6
HPP92_012253 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.4e-204 718.4 883 46.5
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 5.5e-177 626.7 507 64.7
HPP92_012298 Vanilla planifolia HOM05D003939 ORTHO05D005979 3.1e-172 610.9 724 47.0
Glyma.19G029000 Glycine max HOM05D003939 ORTHO05D005979 5.9e-163 580.1 560 58.4
Cpa.g.sc2744.1 Carica papaya HOM05D003939 ORTHO05D005979 1.5e-158 565.5 438 65.8
PGSC0003DMG400012376 Solanum tuberosum HOM05D003939 ORTHO05D005979 4.4e-134 484.2 503 54.9
CSS0005126 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.3e-133 482.6 512 55.5
SEGI_06328 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 3.0e-130 471.5 549 49.9
Gohir.1Z049344 Gossypium hirsutum HOM05D003939 ORTHO05D005979 2.1e-128 465.3 421 58.9
DCAR_026524 Daucus carota HOM05D003939 ORTHO05D005979 4.0e-127 461.1 558 49.6
CDE04G2810 Ceratophyllum demersum HOM05D003939 ORTHO05D005979 3.2e-124 451.4 504 53.4
ClCG07G007370 Citrullus lanatus HOM05D003939 ORTHO05D005979 3.3e-121 441.4 284 79.9
CSS0039149 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 3.4e-110 404.8 484 51.4
Prupe.2G279500 Prunus persica HOM05D003939 ORTHO05D005979 1.9e-100 372.5 430 50.9
HPP92_012254 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.9e-100 372.5 324 60.2
Hma1.2p1_0481F.1_g162010 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 1.6e-99 369.4 391 54.2
Cpa.g.sc14.167 Carica papaya HOM05D003939 ORTHO05D005979 5.3e-95 354.4 290 63.4
SEGI_04445 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 2.0e-94 352.4 282 62.8
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.4e-92 346.3 347 51.6
Psat0s5863g0040 Pisum sativum HOM05D003939 ORTHO05D005979 4.3e-81 308.1 363 51.2
Cre06.g278269 Chlamydomonas reinhardtii HOM05D003939 ORTHO05D005979 6.5e-69 267.7 1591 22.5
Psat0s9359g0040 Pisum sativum HOM05D003939 ORTHO05D005979 5.0e-45 188.3 189 55.0
Hma1.2p1_0481F.1_g162030 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 2.1e-43 183.0 223 45.7
Lju41A4T72 Lonicera japonica HOM05D003939 ORTHO05D005979 3.6e-43 182.2 165 58.2
BolC9t58997H Brassica oleracea HOM05D003939 ORTHO05D005979 1.0e-42 180.6 120 73.3
CiPaw.03G089700 Carya illinoinensis HOM05D003939 ORTHO05D005979 9.8e-41 174.1 172 59.3
MCO01G540 Micromonas commoda HOM05D003939 ORTHO05D005979 2.7e-38 166.0 397 30.2
HPP92_012255 Vanilla planifolia HOM05D003939 ORTHO05D005979 2.0e-33 149.8 441 30.2
CSS0004390 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.3e-32 147.1 273 41.8
CAN.G61.23 Capsicum annuum HOM05D003939 ORTHO05D005979 3.0e-29 136.0 118 54.2
MELO3C000805.2 Cucumis melo HOM05D003939 ORTHO05D005979 8.6e-29 134.4 90 77.8
Psat5g278520 Pisum sativum HOM05D003939 ORTHO05D030477 7.3e-28 131.3 95 68.4
Cpa.g.c43937 Carica papaya HOM05D003939 ORTHO05D005979 2.8e-27 129.4 70 90.0
MBI06_g03947_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 6.2e-27 128.3 135 54.1
Psat3g154360 Pisum sativum HOM05D003939 ORTHO05D030477 5.8e-25 121.7 93 66.7
MELO3C001621.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.3e-24 120.6 78 76.9
Psat3g154320 Pisum sativum HOM05D003939 ORTHO05D030477 4.9e-24 118.6 94 64.9
MBI19_g03794_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 1.1e-23 117.5 193 42.5
Glyma.01G130950 Glycine max HOM05D003939 ORTHO05D005979 1.6e-22 113.6 99 57.6
C09p61570 Brassica napus HOM05D003939 ORTHO05D005979 1.7e-21 110.2 79 67.1
Atru.chr8.420 Acer truncatum HOM05D003939 ORTHO05D013368 1.5e-20 107.1 86 67.4
Hma1.2p1_0481F.1_g162040 Hydrangea macrophylla HOM05D003939 ORTHO05D013368 2.5e-20 106.3 78 67.9
arahy.Tifrunner.gnm1.ann1.HI697U Arachis hypogaea HOM05D001278 ORTHO05D005979 1.1e-18 100.9 112 49.1
TPR.G3973 Trifolium pratense HOM05D003939 ORTHO05D005979 2.0e-17 96.7 198 32.8
arahy.Tifrunner.gnm1.ann1.BV8AZF Arachis hypogaea HOM05D001278 ORTHO05D004786 3.7e-16 92.4 95 50.5
MELO3C001721.2 Cucumis melo HOM05D003939 ORTHO05D005979 3.7e-16 92.4 61 77.0
Solyc03g059400.1 Solanum lycopersicum HOM05D003939 ORTHO05D013368 6.4e-16 91.7 77 61.0
C09p61560 Brassica napus HOM05D003939 ORTHO05D013368 2.4e-15 89.7 112 42.9
TAR376G0271 Trochodendron aralioides HOM05D003939 ORTHO05D009412 2.4e-15 89.7 48 87.5
Nitab4.5_0002960g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 3.2e-15 89.4 76 63.2
TAR376G0356 Trochodendron aralioides HOM05D003939 ORTHO05D009412 7.1e-15 88.2 48 85.4
TAR629G0495 Trochodendron aralioides HOM05D003939 ORTHO05D005979 9.2e-15 87.8 59 72.9
Nitab4.5_0001637g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 1.2e-14 87.4 85 56.5
TAR629G2192 Trochodendron aralioides HOM05D003939 ORTHO05D013368 8.6e-13 81.3 103 48.5
SEGI_31617 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 4.3e-12 79.0 255 27.5
PSO063G0192 Papaver somniferum HOM05D001862 ORTHO05D005979 1.5e-09 70.5 94 43.6
Psat5g164760 Pisum sativum HOM05D003939 ORTHO05D005979 2.0e-09 70.1 53 62.3
BolC9t58995H Brassica oleracea HOM05D003939 ORTHO05D013368 4.4e-09 68.9 81 45.7
ATR0035G002 Amborella trichopoda HOM05D003939 ORTHO05D013368 6.4e-08 65.1 72 47.2
ATR1045G001 Amborella trichopoda HOM05D003939 ORTHO05D013368 6.4e-08 65.1 72 47.2
ATR0064G012 Amborella trichopoda HOM05D003939 ORTHO05D013368 2.4e-07 63.2 72 45.8
MBI19_g32131_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 3.2e-07 62.8 65 55.4
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 5.4e-07 62.0 109 38.5
PSO013G0049 Papaver somniferum HOM05D003939 ORTHO05D013368 7.1e-07 61.6 75 41.3
SEGI_38119 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 9.2e-07 61.2 153 25.5


User provided reference genes

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