Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002477 Sechium edule HOM05D005526 ORTHO05D006802 2.6e-242 841.6 437 100.0
CsaV3_4G001390 Cucumis sativus L. HOM05D005526 ORTHO05D006802 7.5e-221 770.4 437 91.1
ClCG07G012810 Citrullus lanatus HOM05D005526 ORTHO05D006802 1.5e-192 676.4 444 82.4
Cfa002011 Carpinus fangiana HOM05D005526 ORTHO05D006802 1.3e-177 626.7 436 75.2
MELO3C017901.2 Cucumis melo HOM05D005526 ORTHO05D006802 2.8e-175 619.0 357 89.4
Dinv38097 Davidia involucrata HOM05D005526 ORTHO05D006802 1.1e-174 617.1 437 73.7
TAR383G0281 Trochodendron aralioides HOM05D005526 ORTHO05D006802 5.8e-173 611.3 437 74.1
Lj3g0017842 Lotus japonicus HOM05D005526 ORTHO05D006802 7.1e-171 604.4 435 72.2
Ciclev10025661m.g Citrus clementina HOM05D005526 ORTHO05D006802 3.5e-170 602.1 439 72.9
Duzib235G1092 Durio zibethinus HOM05D005526 ORTHO05D006802 7.8e-170 600.9 436 72.9
CiPaw.01G244400 Carya illinoinensis HOM05D005526 ORTHO05D006802 2.3e-169 599.4 437 71.9
Glyma.15G010400 Glycine max HOM05D005526 ORTHO05D006802 8.7e-169 597.4 436 72.0
Gohir.D06G117200 Gossypium hirsutum HOM05D005526 ORTHO05D006802 8.7e-169 597.4 435 72.6
Gorai.010G134800 Gossypium raimondii HOM05D005526 ORTHO05D006802 2.5e-168 595.9 435 72.4
Thecc.06G073100 Theobroma cacao HOM05D005526 ORTHO05D006802 3.3e-168 595.5 436 72.2
Actinidia08810 Actinidia chinensis HOM05D005526 ORTHO05D006802 5.6e-168 594.7 437 72.5
Gohir.A06G112600 Gossypium hirsutum HOM05D005526 ORTHO05D006802 5.6e-168 594.7 435 73.1
Ca_01085_v3 Cicer arietinum L. HOM05D005526 ORTHO05D006802 2.1e-167 592.8 439 71.8
Atru.chr1.3093 Acer truncatum HOM05D005526 ORTHO05D006802 2.8e-167 592.4 437 71.2
CSS0037293 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 6.2e-167 591.3 437 71.4
Glyma.13G363400 Glycine max HOM05D005526 ORTHO05D006802 2.4e-166 589.3 436 70.6
Manes.04G116500 Manihot esculenta HOM05D005526 ORTHO05D006802 2.4e-166 589.3 437 71.9
TWI18G0833 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 2.0e-165 586.3 436 71.3
Medtr2g103110 Medicago truncatula HOM05D005526 ORTHO05D006802 1.3e-164 583.6 444 69.6
Prupe.3G079900 Prunus persica HOM05D005526 ORTHO05D006802 2.9e-164 582.4 448 69.2
TWI75G1755 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 3.8e-164 582.0 436 71.6
MD09G1221000 Malus domestica HOM05D005526 ORTHO05D006802 5.4e-163 578.2 439 69.9
Nn2g11952 Nelumbo nucifera HOM05D005526 ORTHO05D006802 2.1e-162 576.2 437 70.7
Cpa.g.sc336.8 Carica papaya HOM05D005526 ORTHO05D006802 4.6e-162 575.1 410 72.4
FAN02G2127 Fragaria x ananassa HOM05D005526 ORTHO05D006802 5.1e-161 571.6 437 69.8
FvH4_6g30340 Fragaria vesca HOM05D005526 ORTHO05D006802 7.3e-160 567.8 437 68.9
Potri.001G172800 Populus trichocarpa HOM05D005526 ORTHO05D006802 9.6e-160 567.4 439 69.2
Phvul.005G174900 Phaseolus vulgaris HOM05D005526 ORTHO05D006802 1.6e-159 566.6 437 69.3
arahy.Tifrunner.gnm1.ann1.FYL3MV Arachis hypogaea HOM05D005526 ORTHO05D006802 9.0e-158 560.8 438 68.9
CANSAT56G0953 Cannabis sativa HOM05D005526 ORTHO05D006802 2.6e-157 559.3 408 72.5
Eucgr.J03045 Eucalyptus grandis HOM05D005526 ORTHO05D006802 9.9e-157 557.4 426 69.5
QL05p027824 Quercus lobata HOM05D005526 ORTHO05D006802 3.2e-155 552.4 521 59.7
Aqoxy7G02084 Aquilegia oxysepala HOM05D005526 ORTHO05D006802 2.3e-153 546.2 433 68.4
THA.LOC104812497 Tarenaya hassleriana HOM05D005526 ORTHO05D006802 2.3e-153 546.2 415 70.4
MBI01_g11875_MAGBIO Magnolia biondii HOM05D005526 ORTHO05D006802 5.6e-152 541.6 443 67.3
MSTRG.9436 Avicennia marina HOM05D005526 ORTHO05D006802 1.8e-150 536.6 436 66.3
VMungo1080G0636 Vigna mungo HOM05D005526 ORTHO05D006802 1.8e-150 536.6 429 66.2
MD17G1204400 Malus domestica HOM05D005526 ORTHO05D006802 4.0e-150 535.4 520 58.8
SalBow2G2365 Salvia bowleyana HOM05D005526 ORTHO05D006802 6.9e-150 534.6 438 66.2
ECA234G2940 Erigeron canadensis HOM05D005526 ORTHO05D006802 2.0e-149 533.1 437 67.5
PGR031G1627 Punica granatum HOM05D005526 ORTHO05D006802 2.6e-149 532.7 446 65.5
Hund06580 Selenicereus undatus HOM05D005526 ORTHO05D006802 4.5e-149 531.9 435 65.5
DCAR_025483 Daucus carota HOM05D005526 ORTHO05D006802 1.3e-148 530.4 435 65.3
Dinv30571 Davidia involucrata HOM05D005526 ORTHO05D006802 2.9e-148 529.3 360 75.6
PSO170G3249 Papaver somniferum HOM05D005526 ORTHO05D006802 3.8e-148 528.9 440 64.5
Rhsim12G0193000 Rhododendron simsii HOM05D005526 ORTHO05D006802 1.6e-146 523.5 539 57.1
Sp5g35600 Schrenkiella parvula HOM05D005526 ORTHO05D006802 6.7e-145 518.1 405 66.7
vmacro16915 Vaccinium macrocarpon HOM05D005526 ORTHO05D006802 4.3e-144 515.4 559 54.9
AUR62016379 Chenopodium quinoa HOM05D005526 ORTHO05D006802 1.3e-143 513.8 437 63.2
Migut.D01055 Erythranthe guttata HOM05D005526 ORTHO05D006802 1.3e-143 513.8 439 64.2
Solyc06g067990.3 Solanum lycopersicum HOM05D005526 ORTHO05D006802 1.8e-142 510.0 439 65.8
EL10Ac9g21940 Beta vulgaris HOM05D005526 ORTHO05D006802 4.5e-141 505.4 437 63.4
Thhalv10018648m.g Eutrema salsugineum HOM05D005526 ORTHO05D006802 1.4e-139 500.4 405 65.2
SGA_v2.0_scaffold16G07615 Striga asiatica HOM05D005526 ORTHO05D006802 2.1e-138 496.5 418 63.9
Sc10g0005720 Simmondsia chinensis HOM05D005526 ORTHO05D006802 3.5e-138 495.7 435 62.3
CARHR074270 Cardamine hirsuta HOM05D005526 ORTHO05D006802 4.6e-138 495.4 407 63.6
BcaB02g07290 Brassica carinata HOM05D005526 ORTHO05D006802 7.9e-138 494.6 422 62.3
FAN09G0405 Fragaria x ananassa HOM05D005526 ORTHO05D006802 7.9e-138 494.6 437 63.2
AT3G06820 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 4.8e-135 485.3 406 64.5
A07p26570 Brassica napus HOM05D005526 ORTHO05D006802 5.3e-134 481.9 419 61.8
AT1G80210 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 6.9e-134 481.5 373 67.0
BcaC08g45297 Brassica carinata HOM05D005526 ORTHO05D006802 2.0e-133 479.9 422 61.1
CiPaw.02G154800 Carya illinoinensis HOM05D005526 ORTHO05D006802 2.6e-133 479.6 323 76.5
C06p28990 Brassica napus HOM05D005526 ORTHO05D006802 3.4e-133 479.2 423 61.2
BolC6t38065H Brassica oleracea HOM05D005526 ORTHO05D006802 1.3e-132 477.2 425 60.7
arahy.Tifrunner.gnm1.ann1.IMA97E Arachis hypogaea HOM05D005526 ORTHO05D006802 6.5e-132 474.9 459 60.1
GSVIVG01017251001 Vitis vinifera HOM05D005526 ORTHO05D006802 3.2e-131 472.6 357 69.7
Lalb_Chr14g0373681 Lupinus albus HOM05D005526 ORTHO05D006802 3.6e-130 469.2 356 69.7
Aa31LG4G500 Aethionema arabicum HOM05D005526 ORTHO05D006802 2.0e-125 453.4 406 61.6
COL.COLO4_12896 Corchorus olitorius HOM05D005526 ORTHO05D006802 4.5e-125 452.2 360 67.5
CDE02G1452 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 7.7e-125 451.4 440 58.6
Lsat_1_v5_gn_5_132520 Lactuca sativa HOM05D005526 ORTHO05D006802 4.2e-123 445.7 437 60.2
Psat5g300440 Pisum sativum HOM05D005526 ORTHO05D006802 1.2e-122 444.1 358 64.8
Oeu052283.1 Olea europaea HOM05D005526 ORTHO05D006802 7.9e-122 441.4 457 57.5
Lj5C68G25 Lonicera japonica HOM05D005526 ORTHO05D006802 1.4e-121 440.7 359 66.3
RcHm_v2.0_Chr2g0136621 Rosa chinensis HOM05D005526 ORTHO05D006802 1.4e-121 440.7 356 64.9
BraA07t30300Z Brassica rapa HOM05D005526 ORTHO05D006802 8.8e-121 438.0 405 58.5
AUR62011560 Chenopodium quinoa HOM05D005526 ORTHO05D006802 2.0e-120 436.8 442 56.6
CSS0003126 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 2.2e-119 433.3 360 66.7
Os05g0542600 Oryza sativa ssp. japonica HOM05D005526 ORTHO05D006802 3.1e-118 429.5 431 56.4
Peaxi162Scf00207g00731 Petunia axillaris HOM05D005526 ORTHO05D006802 7.0e-118 428.3 441 55.8
SEGI_35764 Sequoiadendron giganteum HOM05D005526 ORTHO05D006802 7.7e-117 424.9 437 54.7
TPR.G37284 Trifolium pratense HOM05D005526 ORTHO05D006802 1.0e-116 424.5 364 63.2
Zm00001eb294490 Zea mays HOM05D005526 ORTHO05D006802 2.1e-114 416.8 433 55.0
Nitab4.5_0000620g0060 Nicotiana tabacum HOM05D005526 ORTHO05D006802 1.4e-113 414.1 437 56.3
Nitab4.5_0013710g0010 Nicotiana tabacum HOM05D005526 ORTHO05D006802 7.4e-112 408.3 442 56.3
HanXRQChr10g0303071 Helianthus annuus HOM05D005526 ORTHO05D006802 2.8e-111 406.4 357 62.7
Ah.01g020810 Amaranthus hybridus HOM05D005526 ORTHO05D006802 4.1e-110 402.5 447 54.6
CAN.G395.46 Capsicum annuum HOM05D005526 ORTHO05D006802 4.1e-110 402.5 359 64.9
Oeu063802.2 Olea europaea HOM05D005526 ORTHO05D006802 7.7e-109 398.3 353 63.5
Sopen06g025270 Solanum pennellii HOM05D005526 ORTHO05D006802 1.3e-108 397.5 359 64.3
unitig_899.g14780 Utricularia gibba HOM05D005526 ORTHO05D006802 2.1e-106 390.2 412 55.3
Cc04_g04020 Coffea canephora HOM05D005526 ORTHO05D006802 8.0e-106 388.3 360 60.8
AL3G17940 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 2.8e-103 379.8 325 60.3
AL2G41300 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 9.1e-102 374.8 325 60.3
Carub.0002s2731 Capsella rubella HOM05D005526 ORTHO05D006802 4.5e-101 372.5 326 60.4
CDE01G0292 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 6.5e-100 368.6 393 54.7
Pp3c27_4740 Physcomitrium patens HOM05D005526 ORTHO05D006802 1.3e-92 344.4 430 49.3
Mapoly0053s0043 Marchantia polymorpha HOM05D005526 ORTHO05D006802 1.1e-91 341.3 432 48.8
SGA_v2.0_scaffold37G14789 Striga asiatica HOM05D005526 ORTHO05D006802 1.2e-88 331.3 397 51.4
CBR_g46861 Chara braunii HOM05D005526 ORTHO05D006802 1.3e-87 327.8 429 45.2
HPP92_009843 Vanilla planifolia HOM05D005526 ORTHO05D006802 7.0e-86 322.0 344 54.7
ATR1156G007 Amborella trichopoda HOM05D005526 ORTHO05D006802 1.7e-79 300.8 356 52.8
Sed0012845 Sechium edule HOM05D005526 ORTHO05D006802 4.3e-75 286.2 342 54.1
Oeu014842.2 Olea europaea HOM05D005526 ORTHO05D006802 1.3e-71 274.6 327 52.0
Haze_16513 Corylus avellana HOM05D005526 ORTHO05D006802 3.2e-70 270.0 221 64.3
Haze_16512 Corylus avellana HOM05D005526 ORTHO05D006802 1.7e-68 264.2 229 66.4
FAN14G4362 Fragaria x ananassa HOM05D005526 ORTHO05D006802 1.2e-66 258.1 304 51.6
Zm00001eb342510 Zea mays HOM05D005526 ORTHO05D006802 3.6e-66 256.5 216 65.3
SMO196G0028 Selaginella moellendorffii HOM05D005526 ORTHO05D006802 3.2e-46 190.3 385 35.1
AagrBONN_evm.TU.Sc2ySwM_368.2431 Anthoceros agrestis HOM05D005526 ORTHO05D006802 1.1e-43 181.8 330 36.7
Cre11.g475400 Chlamydomonas reinhardtii HOM05D005526 ORTHO05D006802 2.3e-36 157.5 139 59.0
FAN05G1558 Fragaria x ananassa HOM05D005526 ORTHO05D006802 1.3e-31 141.7 80 88.8
RcHm_v2.0_Chr2g0136631 Rosa chinensis HOM05D005526 ORTHO05D006802 1.3e-31 141.7 80 88.8
CSS0009710 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 4.9e-31 139.8 80 87.5
TPR.G37278 Trifolium pratense HOM05D005526 ORTHO05D006802 8.4e-31 139.0 80 86.2
GSVIVG01017250001 Vitis vinifera HOM05D005526 ORTHO05D006802 1.9e-30 137.9 73 94.5
Sabra01G0138900 Salix brachista HOM05D005526 ORTHO05D006802 2.5e-30 137.5 80 85.0
Lj5A68T70 Lonicera japonica HOM05D005526 ORTHO05D006802 2.1e-29 134.4 80 82.5
Lalb_Chr14g0373671 Lupinus albus HOM05D005526 ORTHO05D006802 2.7e-29 134.0 80 81.2
HanXRQChr10g0303081 Helianthus annuus HOM05D005526 ORTHO05D006802 6.0e-29 132.9 80 85.0
Cc04_g04010 Coffea canephora HOM05D005526 ORTHO05D006802 7.9e-29 132.5 80 85.0
ATR1156G076 Amborella trichopoda HOM05D005526 ORTHO05D006802 1.0e-28 132.1 80 82.5
AagrBONN_evm.TU.Sc2ySwM_368.2432 Anthoceros agrestis HOM05D005526 ORTHO05D006802 8.7e-28 129.0 80 78.8
Sopen06g025280 Solanum pennellii HOM05D005526 ORTHO05D006802 1.9e-27 127.9 80 78.8
PGSC0003DMG401028513 Solanum tuberosum HOM05D005526 ORTHO05D006802 1.9e-27 127.9 80 78.8
SalBow8G0881 Salvia bowleyana HOM05D005526 ORTHO05D006802 4.2e-22 110.2 91 64.8
Gohir.A10G140700 Gossypium hirsutum HOM05D000009 ORTHO05D000008 1.8e-12 78.2 52 75.0
Pp3c25_2940 Physcomitrium patens HOM05D005526 ORTHO05D311957 2.2e-10 71.2 87 44.8
CAN.G395.47 Capsicum annuum HOM05D005526 ORTHO05D006802 6.3e-10 69.7 45 75.6
COL.COLO4_12895 Corchorus olitorius HOM05D005526 ORTHO05D006802 1.0e-07 62.4 30 96.7
Pp3c6_24500 Physcomitrium patens HOM05D005526 ORTHO05D006802 5.5e-06 56.6 104 37.5


User provided reference genes

Program Settings