Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc22g0004350 Simmondsia chinensis HOM05D028099 ORTHO05D011165 7.7e-186 653.7 330 100.0
Sc02g0004440 Simmondsia chinensis HOM05D003387 ORTHO05D011165 3.9e-28 129.8 189 41.3
Sc07g0005070 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.9e-27 127.5 89 69.7
Sc15g0004160 Simmondsia chinensis HOM05D028099 ORTHO05D389573 3.7e-23 113.2 149 43.6
Sc23g0006260 Simmondsia chinensis HOM05D028099 ORTHO05D387563 4.9e-23 112.8 142 49.3
Sc08g0004060 Simmondsia chinensis HOM05D028099 ORTHO05D389637 2.1e-18 97.4 91 56.0
Sc16g0004600 Simmondsia chinensis HOM05D008654 ORTHO05D011165 4.7e-18 96.3 191 36.6
Sc13g0008890 Simmondsia chinensis HOM05D031019 ORTHO05D011165 6.8e-17 92.4 168 38.1
Sc15g0003120 Simmondsia chinensis HOM05D003387 ORTHO05D011165 6.8e-17 92.4 82 54.9
Sc20g0003080 Simmondsia chinensis HOM05D012448 ORTHO05D011165 2.6e-16 90.5 128 39.1
Sc26g0003450 Simmondsia chinensis HOM05D031019 ORTHO05D011165 7.6e-16 89.0 178 34.8
Sc12g0007970 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.3e-15 88.2 131 37.4
Sc16g0004730 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.3e-15 88.2 104 46.2
Sc18g0004320 Simmondsia chinensis HOM05D031019 ORTHO05D011165 1.7e-15 87.8 190 34.2
Sc17g0002610 Simmondsia chinensis HOM05D003387 ORTHO05D011165 2.9e-15 87.0 159 34.6
Sc16g0005390 Simmondsia chinensis HOM05D000143 ORTHO05D000072 1.1e-14 85.1 99 52.5
Sc07g0005580 Simmondsia chinensis HOM05D003387 ORTHO05D011165 3.5e-13 80.1 80 48.8
Sc07g0005590 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.3e-12 78.2 80 48.8
Sc01g0004380 Simmondsia chinensis HOM05D031019 ORTHO05D011165 3.0e-12 77.0 210 31.0
Sc21g0004200 Simmondsia chinensis HOM05D012448 ORTHO05D011165 8.6e-12 75.5 77 45.5
Sc04g0006840 Simmondsia chinensis HOM05D003387 ORTHO05D011165 2.5e-11 73.9 120 34.2
Sc09g0007220 Simmondsia chinensis HOM05D003387 ORTHO05D011165 4.3e-11 73.2 91 44.0
Sc07g0004700 Simmondsia chinensis HOM05D012448 ORTHO05D011165 3.6e-10 70.1 160 31.2
Os01g0867800 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D005400 6.2e-10 69.3 116 36.2
Sc12g0007750 Simmondsia chinensis HOM05D015224 ORTHO05D011165 1.1e-09 68.6 75 45.3
Sc04g0003810 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.4e-09 68.2 75 42.7
Sc03g0005120 Simmondsia chinensis HOM05D015224 ORTHO05D011165 6.8e-09 65.9 76 43.4
Hund19618 Selenicereus undatus HOM05D003387 ORTHO05D005400 8.9e-09 65.5 76 40.8
Sc16g0004050 Simmondsia chinensis HOM05D003387 ORTHO05D005400 1.5e-08 64.7 76 43.4
Cfa002795 Carpinus fangiana HOM05D003387 ORTHO05D005400 2.0e-08 64.3 76 43.4
Sc21g0003950 Simmondsia chinensis HOM05D015224 ORTHO05D011165 2.6e-08 63.9 75 45.3
Nn1g06041 Nelumbo nucifera HOM05D003387 ORTHO05D005400 3.4e-08 63.5 76 44.7
GSVIVG01022282001 Vitis vinifera HOM05D003387 ORTHO05D005400 3.4e-08 63.5 76 43.4
Ah.02g123810 Amaranthus hybridus HOM05D003387 ORTHO05D005400 4.4e-08 63.2 76 40.8
BcaB04g17624 Brassica carinata HOM05D003387 ORTHO05D005400 4.4e-08 63.2 103 35.0
Eucgr.F04205 Eucalyptus grandis HOM05D003387 ORTHO05D005400 4.4e-08 63.2 76 42.1
Phvul.007G081900 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 5.8e-08 62.8 76 43.4
QL06p031237 Quercus lobata HOM05D003387 ORTHO05D005400 5.8e-08 62.8 76 42.1
EL10Ac6g15237 Beta vulgaris HOM05D003387 ORTHO05D005400 7.6e-08 62.4 76 38.2
Lj5g0027187 Lotus japonicus HOM05D003387 ORTHO05D005400 7.6e-08 62.4 76 42.1
Nn5g28791 Nelumbo nucifera HOM05D003387 ORTHO05D005400 7.6e-08 62.4 76 43.4
TAR628G0869 Trochodendron aralioides HOM05D003387 ORTHO05D005400 7.6e-08 62.4 76 43.4
VMungo0720G1662 Vigna mungo HOM05D003387 ORTHO05D005400 7.6e-08 62.4 76 42.1
Os02g0789700 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D011165 9.9e-08 62.0 84 36.9
SGA_v2.0_scaffold274G46519 Striga asiatica HOM05D003387 ORTHO05D005400 9.9e-08 62.0 76 42.1
Haze_25093 Corylus avellana HOM05D003387 ORTHO05D005400 1.3e-07 61.6 76 42.1
Glyma.02G080500 Glycine max HOM05D003387 ORTHO05D005400 1.3e-07 61.6 76 43.4
Glyma.10G223300 Glycine max HOM05D003387 ORTHO05D005400 1.3e-07 61.6 76 43.4
Glyma.16G165000 Glycine max HOM05D003387 ORTHO05D005400 1.3e-07 61.6 76 43.4
Glyma.20G168400 Glycine max HOM05D003387 ORTHO05D005400 1.3e-07 61.6 76 43.4
Psat6g192160 Pisum sativum HOM05D003387 ORTHO05D005400 1.3e-07 61.6 76 42.1
vmacro01482 Vaccinium macrocarpon HOM05D003387 ORTHO05D005400 1.3e-07 61.6 76 42.1
Ah.05g168100 Amaranthus hybridus HOM05D003387 ORTHO05D005400 1.7e-07 61.2 76 40.8
CiPaw.04G088200 Carya illinoinensis HOM05D003387 ORTHO05D005400 1.7e-07 61.2 76 40.8
Ca_10675_v3 Cicer arietinum L. HOM05D003387 ORTHO05D005400 1.7e-07 61.2 76 42.1
Lalb_Chr02g0141481 Lupinus albus HOM05D003387 ORTHO05D005400 1.7e-07 61.2 76 40.8
TPR.G17034 Trifolium pratense HOM05D003387 ORTHO05D005400 1.7e-07 61.2 95 35.8
TAR376G0277 Trochodendron aralioides HOM05D003387 ORTHO05D005400 1.7e-07 61.2 76 43.4
GSVIVG01034558001 Vitis vinifera HOM05D003387 ORTHO05D005400 1.7e-07 61.2 76 43.4
arahy.Tifrunner.gnm1.ann1.9CFF48 Arachis hypogaea HOM05D003387 ORTHO05D005400 2.2e-07 60.8 76 42.1
arahy.Tifrunner.gnm1.ann1.K61U57 Arachis hypogaea HOM05D003387 ORTHO05D005400 2.2e-07 60.8 76 42.1
arahy.Tifrunner.gnm1.ann1.LGJ4PH Arachis hypogaea HOM05D003387 ORTHO05D005400 2.2e-07 60.8 76 42.1
arahy.Tifrunner.gnm1.ann1.RF14FM Arachis hypogaea HOM05D003387 ORTHO05D005400 2.2e-07 60.8 76 42.1
Phvul.004G092400 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 2.2e-07 60.8 76 43.4
Duzib093G0739 Durio zibethinus HOM05D003387 ORTHO05D005400 2.9e-07 60.5 76 42.1
Gohir.A02G063500 Gossypium hirsutum HOM05D003387 ORTHO05D005400 2.9e-07 60.5 76 42.1
Gohir.D02G069100 Gossypium hirsutum HOM05D003387 ORTHO05D005400 2.9e-07 60.5 76 42.1
Gorai.005G078200 Gossypium raimondii HOM05D003387 ORTHO05D005400 2.9e-07 60.5 76 42.1
Medtr1g098530 Medicago truncatula HOM05D003387 ORTHO05D005400 2.9e-07 60.5 76 40.8
Potri.002G066000 Populus trichocarpa HOM05D003387 ORTHO05D005400 2.9e-07 60.5 76 43.4
PGR042G1308 Punica granatum HOM05D003387 ORTHO05D005400 2.9e-07 60.5 76 40.8
SEGI_27673 Sequoiadendron giganteum HOM05D003387 ORTHO05D005400 2.9e-07 60.5 76 42.1
Sc25g0003800 Simmondsia chinensis HOM05D003387 ORTHO05D011165 2.9e-07 60.5 75 32.0
VMungo0464G0875 Vigna mungo HOM05D003387 ORTHO05D005400 2.9e-07 60.5 76 43.4
Zm00001eb348540 Zea mays HOM05D003387 ORTHO05D005400 2.9e-07 60.5 76 39.5
Aqoxy2G00397 Aquilegia oxysepala HOM05D003387 ORTHO05D005400 3.8e-07 60.1 76 43.4
CiPaw.15G014400 Carya illinoinensis HOM05D003387 ORTHO05D005400 3.8e-07 60.1 76 42.1
MBI16_g07738_MAGBIO Magnolia biondii HOM05D003387 ORTHO05D005400 3.8e-07 60.1 79 40.5
SalBow1G1267 Salvia bowleyana HOM05D003387 ORTHO05D005400 3.8e-07 60.1 76 42.1
Sp1g32390 Schrenkiella parvula HOM05D003387 ORTHO05D005400 3.8e-07 60.1 95 34.7
TWI34G1705 Tripterygium wilfordii HOM05D003387 ORTHO05D005400 3.8e-07 60.1 76 42.1
BcaC07g37311 Brassica carinata HOM05D003387 ORTHO05D005400 4.9e-07 59.7 95 35.8
A08p06460 Brassica napus HOM05D003387 ORTHO05D005400 4.9e-07 59.7 95 35.8
C08p07450 Brassica napus HOM05D003387 ORTHO05D005400 4.9e-07 59.7 95 35.8
BolC8t47590H Brassica oleracea HOM05D003387 ORTHO05D005400 4.9e-07 59.7 95 35.8
BraA08t32655Z Brassica rapa HOM05D003387 ORTHO05D005400 4.9e-07 59.7 95 35.8
CiPaw.16G009800 Carya illinoinensis HOM05D003387 ORTHO05D005400 4.9e-07 59.7 76 42.1
Ca_04511_v3 Cicer arietinum L. HOM05D003387 ORTHO05D005400 4.9e-07 59.7 95 36.8
Cc04_g09690 Coffea canephora HOM05D003387 ORTHO05D005400 4.9e-07 59.7 76 40.8
Eucgr.F02695 Eucalyptus grandis HOM05D003387 ORTHO05D005400 4.9e-07 59.7 76 43.4
Thhalv10004261m.g Eutrema salsugineum HOM05D003387 ORTHO05D005400 4.9e-07 59.7 95 33.7
Thecc.08G155500 Theobroma cacao HOM05D003387 ORTHO05D005400 4.9e-07 59.7 76 42.1
Dinv25885 Davidia involucrata HOM05D003387 ORTHO05D005400 6.4e-07 59.3 76 42.1
ECA232G0053 Erigeron canadensis HOM05D003387 ORTHO05D005400 6.4e-07 59.3 76 40.8
FvH4_2g13280 Fragaria vesca HOM05D003387 ORTHO05D005400 6.4e-07 59.3 76 43.4
FAN20G0358 Fragaria x ananassa HOM05D003387 ORTHO05D005400 6.4e-07 59.3 76 43.4
FAN24G3173 Fragaria x ananassa HOM05D003387 ORTHO05D005400 6.4e-07 59.3 76 43.4
Lsat_1_v5_gn_9_41940 Lactuca sativa HOM05D003387 ORTHO05D005400 6.4e-07 59.3 76 42.1
MD04G1044700 Malus domestica HOM05D003387 ORTHO05D005400 6.4e-07 59.3 76 43.4
Os05g0437300 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D005400 6.4e-07 59.3 76 39.5
QL02p037738 Quercus lobata HOM05D003387 ORTHO05D005400 6.4e-07 59.3 76 42.1
QL02p038708 Quercus lobata HOM05D003387 ORTHO05D005400 6.4e-07 59.3 76 42.1
RcHm_v2.0_Chr6g0274691 Rosa chinensis HOM05D003387 ORTHO05D005400 6.4e-07 59.3 76 43.4
Hund26682 Selenicereus undatus HOM05D003387 ORTHO05D005400 6.4e-07 59.3 76 40.8
Zm00001eb289150 Zea mays HOM05D003387 ORTHO05D005400 6.4e-07 59.3 76 39.5
CARHR035330 Cardamine hirsuta HOM05D003387 ORTHO05D005400 8.4e-07 58.9 95 34.7
Lalb_Chr06g0161681 Lupinus albus HOM05D003387 ORTHO05D005400 8.4e-07 58.9 76 39.5
Lalb_Chr21g0305541 Lupinus albus HOM05D003387 ORTHO05D005400 8.4e-07 58.9 76 39.5
PSO700G0143 Papaver somniferum HOM05D003387 ORTHO05D005400 8.4e-07 58.9 76 42.1
Psat1g100400 Pisum sativum HOM05D003387 ORTHO05D005400 8.4e-07 58.9 76 40.8
Prupe.8G036700 Prunus persica HOM05D003387 ORTHO05D005400 8.4e-07 58.9 76 42.1
PGSC0003DMG400018824 Solanum tuberosum HOM05D003387 ORTHO05D005400 8.4e-07 58.9 117 30.8
THA.LOC104804671 Tarenaya hassleriana HOM05D003387 ORTHO05D005400 8.4e-07 58.9 76 40.8
Aa31LG6G9950 Aethionema arabicum HOM05D003387 ORTHO05D005400 1.1e-06 58.5 95 33.7
AagrBONN_evm.TU.Sc2ySwM_368.3328 Anthoceros agrestis HOM05D003387 ORTHO05D005400 1.1e-06 58.5 76 39.5
AL1G51590 Arabidopsis lyrata HOM05D003387 ORTHO05D005400 1.1e-06 58.5 95 33.7
AT1G43190 Arabidopsis thaliana HOM05D003387 ORTHO05D005400 1.1e-06 58.5 95 33.7
CSS0049572 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D005400 1.1e-06 58.5 76 42.1
CANSAT25G0465 Cannabis sativa HOM05D003387 ORTHO05D005400 1.1e-06 58.5 76 42.1
Carub.0001s3449 Capsella rubella HOM05D003387 ORTHO05D005400 1.1e-06 58.5 95 33.7
Manes.18G093400 Manihot esculenta HOM05D003387 ORTHO05D005400 1.1e-06 58.5 76 42.1
Pp3c14_14100 Physcomitrium patens HOM05D003387 ORTHO05D005400 1.1e-06 58.5 76 39.5
Sed0017554 Sechium edule HOM05D003387 ORTHO05D005400 1.1e-06 58.5 76 40.8
Sc03g0006450 Simmondsia chinensis HOM05D008654 ORTHO05D011165 1.1e-06 58.5 152 29.6
Sc11g0003900 Simmondsia chinensis HOM05D015224 ORTHO05D011165 1.1e-06 58.5 76 42.1
Sc14g0005470 Simmondsia chinensis HOM05D001594 ORTHO05D002862 1.1e-06 58.5 119 38.7
TWI60G0696 Tripterygium wilfordii HOM05D003387 ORTHO05D005400 1.1e-06 58.5 76 42.1
HPP92_002768 Vanilla planifolia HOM05D003387 ORTHO05D005400 1.1e-06 58.5 76 40.8
ATR1126G056 Amborella trichopoda HOM05D003387 ORTHO05D005400 1.4e-06 58.2 76 39.5
Cfa018305 Carpinus fangiana HOM05D003387 ORTHO05D005400 1.4e-06 58.2 76 40.8
Medtr6g037550 Medicago truncatula HOM05D003387 ORTHO05D005400 1.4e-06 58.2 76 39.5
Medtr6g043520 Medicago truncatula HOM05D003387 ORTHO05D005400 1.4e-06 58.2 76 40.8
Sc03g0007670 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.4e-06 58.2 76 38.2
Solyc10g080720.2 Solanum lycopersicum HOM05D003387 ORTHO05D005400 1.4e-06 58.2 76 42.1
ClCG08G002590 Citrullus lanatus HOM05D003387 ORTHO05D005400 1.9e-06 57.8 76 40.8
Ciclev10001148m.g Citrus clementina HOM05D003387 ORTHO05D005400 1.9e-06 57.8 76 42.1
MELO3C024993.2 Cucumis melo HOM05D003387 ORTHO05D005400 1.9e-06 57.8 76 40.8
CsaV3_6G002770 Cucumis sativus L. HOM05D003387 ORTHO05D005400 1.9e-06 57.8 76 40.8
FAN15G3239 Fragaria x ananassa HOM05D003387 ORTHO05D005400 1.9e-06 57.8 76 42.1
PSO541G1407 Papaver somniferum HOM05D003387 ORTHO05D005400 1.9e-06 57.8 76 39.5
PSO675G7282 Papaver somniferum HOM05D003387 ORTHO05D005400 1.9e-06 57.8 76 39.5
Pp3c14_17110 Physcomitrium patens HOM05D003387 ORTHO05D005400 1.9e-06 57.8 76 39.5
PGSC0003DMG400023660 Solanum tuberosum HOM05D003387 ORTHO05D005400 1.9e-06 57.8 76 40.8
CSS0039159 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D005400 2.4e-06 57.4 76 42.1
Duzib116G0668 Durio zibethinus HOM05D003387 ORTHO05D005400 2.4e-06 57.4 76 40.8
Lj7C377G3 Lonicera japonica HOM05D003387 ORTHO05D005400 2.4e-06 57.4 76 40.8
Sabra05G0148200 Salix brachista HOM05D003387 ORTHO05D005400 2.4e-06 57.4 126 31.7
Sopen12g010100 Solanum pennellii HOM05D003387 ORTHO05D005400 2.4e-06 57.4 117 29.9
DCAR_014445 Daucus carota HOM05D003387 ORTHO05D005400 3.2e-06 57.0 76 39.5
Migut.K00003 Erythranthe guttata HOM05D003387 ORTHO05D005400 3.2e-06 57.0 76 42.1
HanXRQChr05g0144181 Helianthus annuus HOM05D003387 ORTHO05D005400 3.2e-06 57.0 76 40.8
Sc25g0001610 Simmondsia chinensis HOM05D015224 ORTHO05D011165 3.2e-06 57.0 78 38.5
Sopen10g031260 Solanum pennellii HOM05D003387 ORTHO05D005400 3.2e-06 57.0 76 40.8
ATR0115G003 Amborella trichopoda HOM05D003387 ORTHO05D005400 4.2e-06 56.6 76 39.5
CDE06G0083 Ceratophyllum demersum HOM05D003387 ORTHO05D005400 4.2e-06 56.6 76 40.8
Lalb_Chr19g0130201 Lupinus albus HOM05D003387 ORTHO05D005400 4.2e-06 56.6 76 39.5
Peaxi162Scf00076g00821 Petunia axillaris HOM05D003387 ORTHO05D005400 4.2e-06 56.6 117 30.8
Potri.005G194700 Populus trichocarpa HOM05D003387 ORTHO05D005400 4.2e-06 56.6 76 38.2
SMO146G0032 Selaginella moellendorffii HOM05D003387 ORTHO05D005400 5.4e-06 56.2 76 38.2
Actinidia10635 Actinidia chinensis HOM05D003387 ORTHO05D005400 7.1e-06 55.8 76 40.8
Manes.02G181600 Manihot esculenta HOM05D003387 ORTHO05D005400 7.1e-06 55.8 76 40.8
THA.LOC104809206 Tarenaya hassleriana HOM05D003387 ORTHO05D005400 7.1e-06 55.8 76 39.5
Atru.chr13.2064 Acer truncatum HOM05D003387 ORTHO05D005400 9.3e-06 55.5 76 42.1
Lj2g0008478 Lotus japonicus HOM05D003387 ORTHO05D005400 9.3e-06 55.5 76 40.8
Sabra02G0052700 Salix brachista HOM05D003387 ORTHO05D005400 9.3e-06 55.5 76 40.8
Sed0013690 Sechium edule HOM05D003387 ORTHO05D005400 9.3e-06 55.5 76 39.5


User provided reference genes

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