Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0004200 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.7e-76 289.3 145 100.0
Sc25g0003800 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.3e-20 103.6 126 44.4
Sc15g0003120 Simmondsia chinensis HOM05D003387 ORTHO05D011165 2.5e-19 99.4 100 55.0
Sc04g0003810 Simmondsia chinensis HOM05D012448 ORTHO05D011165 4.2e-19 98.6 83 56.6
Sc04g0006840 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.8e-17 93.2 85 51.8
Sc07g0005580 Simmondsia chinensis HOM05D003387 ORTHO05D011165 2.3e-17 92.8 81 60.5
Sc07g0005590 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.5e-16 90.1 81 59.3
Sc18g0004320 Simmondsia chinensis HOM05D031019 ORTHO05D011165 1.5e-16 90.1 101 45.5
Sc13g0008890 Simmondsia chinensis HOM05D031019 ORTHO05D011165 4.3e-16 88.6 76 56.6
Sc16g0004600 Simmondsia chinensis HOM05D008654 ORTHO05D011165 4.3e-16 88.6 76 56.6
Sc07g0004700 Simmondsia chinensis HOM05D012448 ORTHO05D011165 5.7e-16 88.2 93 46.2
Sc09g0006480 Simmondsia chinensis HOM05D012448 ORTHO05D011165 7.4e-16 87.8 80 53.8
Sc17g0002610 Simmondsia chinensis HOM05D003387 ORTHO05D011165 7.4e-16 87.8 117 41.0
Sc16g0004730 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.3e-15 87.0 82 59.8
Sc03g0005120 Simmondsia chinensis HOM05D015224 ORTHO05D011165 4.8e-15 85.1 79 53.2
Sc14g0005430 Simmondsia chinensis HOM05D012448 ORTHO05D011165 6.3e-15 84.7 83 49.4
Sc20g0003080 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.1e-14 84.0 79 46.8
Sc26g0003450 Simmondsia chinensis HOM05D031019 ORTHO05D011165 1.1e-14 84.0 86 48.8
Sc12g0007940 Simmondsia chinensis HOM05D012448 ORTHO05D011165 2.4e-14 82.8 113 38.9
Sc12g0007970 Simmondsia chinensis HOM05D003387 ORTHO05D011165 2.4e-14 82.8 81 54.3
Sc09g0007220 Simmondsia chinensis HOM05D003387 ORTHO05D011165 3.1e-14 82.4 86 53.5
Sc01g0004380 Simmondsia chinensis HOM05D031019 ORTHO05D011165 1.5e-13 80.1 100 43.0
Sc12g0007750 Simmondsia chinensis HOM05D015224 ORTHO05D011165 2.6e-13 79.3 118 42.4
Sc22g0003270 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.0e-12 77.4 93 45.2
Sc03g0007670 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.3e-12 77.0 98 41.8
Sc02g0004440 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.7e-12 76.6 77 49.4
Sc08g0005810 Simmondsia chinensis HOM05D012448 ORTHO05D011165 2.2e-12 76.3 109 33.9
Sc16g0004050 Simmondsia chinensis HOM05D003387 ORTHO05D005400 2.9e-12 75.9 80 53.8
Sc11g0004550 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.4e-11 73.6 90 42.2
Sc22g0004350 Simmondsia chinensis HOM05D028099 ORTHO05D011165 1.4e-11 73.6 77 45.5
Sc21g0003950 Simmondsia chinensis HOM05D015224 ORTHO05D011165 1.9e-11 73.2 83 51.8
Zm00001eb289150 Zea mays HOM05D003387 ORTHO05D005400 3.2e-11 72.4 80 48.8
Hund19618 Selenicereus undatus HOM05D003387 ORTHO05D005400 5.5e-11 71.6 80 48.8
Zm00001eb348540 Zea mays HOM05D003387 ORTHO05D005400 5.5e-11 71.6 80 48.8
Sc26g0003240 Simmondsia chinensis HOM05D012448 ORTHO05D011165 9.4e-11 70.9 85 42.4
Os05g0437300 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D005400 1.6e-10 70.1 80 47.5
Sc25g0001610 Simmondsia chinensis HOM05D015224 ORTHO05D011165 2.1e-10 69.7 115 40.0
EL10Ac6g15237 Beta vulgaris HOM05D003387 ORTHO05D005400 3.6e-10 68.9 80 46.2
Sc11g0003900 Simmondsia chinensis HOM05D015224 ORTHO05D011165 3.6e-10 68.9 86 47.7
Ah.02g123810 Amaranthus hybridus HOM05D003387 ORTHO05D005400 1.8e-09 66.6 80 45.0
Os01g0867800 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D005400 1.8e-09 66.6 111 40.5
Cfa002795 Carpinus fangiana HOM05D003387 ORTHO05D005400 2.3e-09 66.2 80 46.2
Nn1g06041 Nelumbo nucifera HOM05D003387 ORTHO05D005400 2.3e-09 66.2 92 44.6
arahy.Tifrunner.gnm1.ann1.9CFF48 Arachis hypogaea HOM05D003387 ORTHO05D005400 3.9e-09 65.5 107 39.3
arahy.Tifrunner.gnm1.ann1.K61U57 Arachis hypogaea HOM05D003387 ORTHO05D005400 3.9e-09 65.5 107 39.3
Eucgr.F04205 Eucalyptus grandis HOM05D003387 ORTHO05D005400 3.9e-09 65.5 80 45.0
FAN15G3239 Fragaria x ananassa HOM05D003387 ORTHO05D005400 3.9e-09 65.5 80 43.8
Mapoly0001s0481 Marchantia polymorpha HOM05D003387 ORTHO05D005400 3.9e-09 65.5 115 38.3
PSO675G7282 Papaver somniferum HOM05D003387 ORTHO05D005400 3.9e-09 65.5 90 40.0
Nn5g28791 Nelumbo nucifera HOM05D003387 ORTHO05D005400 5.1e-09 65.1 92 43.5
CANSAT25G0465 Cannabis sativa HOM05D003387 ORTHO05D005400 6.7e-09 64.7 80 43.8
ECA232G0053 Erigeron canadensis HOM05D003387 ORTHO05D005400 6.7e-09 64.7 80 45.0
Lsat_1_v5_gn_9_41940 Lactuca sativa HOM05D003387 ORTHO05D005400 6.7e-09 64.7 80 47.5
PSO541G1407 Papaver somniferum HOM05D003387 ORTHO05D005400 6.7e-09 64.7 89 39.3
Prupe.8G036700 Prunus persica HOM05D003387 ORTHO05D005400 6.7e-09 64.7 80 43.8
QL06p031237 Quercus lobata HOM05D003387 ORTHO05D005400 6.7e-09 64.7 80 46.2
Sed0017554 Sechium edule HOM05D003387 ORTHO05D005400 6.7e-09 64.7 80 45.0
GSVIVG01022282001 Vitis vinifera HOM05D003387 ORTHO05D005400 6.7e-09 64.7 80 45.0
FvH4_2g13280 Fragaria vesca HOM05D003387 ORTHO05D005400 8.8e-09 64.3 80 42.5
FAN20G0358 Fragaria x ananassa HOM05D003387 ORTHO05D005400 8.8e-09 64.3 80 42.5
FAN24G3173 Fragaria x ananassa HOM05D003387 ORTHO05D005400 8.8e-09 64.3 80 42.5
MD04G1044700 Malus domestica HOM05D003387 ORTHO05D005400 8.8e-09 64.3 80 42.5
RcHm_v2.0_Chr6g0274691 Rosa chinensis HOM05D003387 ORTHO05D005400 8.8e-09 64.3 80 42.5
THA.LOC104804671 Tarenaya hassleriana HOM05D003387 ORTHO05D005400 8.8e-09 64.3 80 46.2
BcaB04g17624 Brassica carinata HOM05D003387 ORTHO05D005400 1.1e-08 63.9 80 43.8
CBR_g7995 Chara braunii HOM05D003387 ORTHO05D005400 1.1e-08 63.9 80 46.2
Ca_04511_v3 Cicer arietinum L. HOM05D003387 ORTHO05D005400 1.1e-08 63.9 107 39.3
Ca_10675_v3 Cicer arietinum L. HOM05D003387 ORTHO05D005400 1.1e-08 63.9 107 40.2
Glyma.02G080500 Glycine max HOM05D003387 ORTHO05D005400 1.1e-08 63.9 107 37.4
Glyma.16G165000 Glycine max HOM05D003387 ORTHO05D005400 1.1e-08 63.9 107 37.4
PSO700G0143 Papaver somniferum HOM05D003387 ORTHO05D005400 1.1e-08 63.9 80 46.2
Phvul.004G092400 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 1.1e-08 63.9 107 37.4
Psat6g192160 Pisum sativum HOM05D003387 ORTHO05D005400 1.1e-08 63.9 107 40.2
Sc18g0004540 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.1e-08 63.9 84 39.3
AagrBONN_evm.TU.Sc2ySwM_368.3328 Anthoceros agrestis HOM05D003387 ORTHO05D005400 1.5e-08 63.5 116 39.7
ClCG08G002590 Citrullus lanatus HOM05D003387 ORTHO05D005400 1.5e-08 63.5 80 43.8
Haze_25093 Corylus avellana HOM05D003387 ORTHO05D005400 1.5e-08 63.5 80 45.0
MELO3C024993.2 Cucumis melo HOM05D003387 ORTHO05D005400 1.5e-08 63.5 80 43.8
CsaV3_6G002770 Cucumis sativus L. HOM05D003387 ORTHO05D005400 1.5e-08 63.5 80 43.8
TAR376G0277 Trochodendron aralioides HOM05D003387 ORTHO05D005400 1.5e-08 63.5 114 38.6
VMungo0464G0875 Vigna mungo HOM05D003387 ORTHO05D005400 1.5e-08 63.5 107 37.4
VMungo0720G1662 Vigna mungo HOM05D003387 ORTHO05D005400 1.5e-08 63.5 80 46.2
BcaC07g37311 Brassica carinata HOM05D003387 ORTHO05D005400 2.0e-08 63.2 80 43.8
A08p06460 Brassica napus HOM05D003387 ORTHO05D005400 2.0e-08 63.2 80 43.8
C08p07450 Brassica napus HOM05D003387 ORTHO05D005400 2.0e-08 63.2 80 43.8
BolC8t47590H Brassica oleracea HOM05D003387 ORTHO05D005400 2.0e-08 63.2 80 43.8
BraA08t32655Z Brassica rapa HOM05D003387 ORTHO05D005400 2.0e-08 63.2 80 43.8
CiPaw.04G088200 Carya illinoinensis HOM05D003387 ORTHO05D005400 2.0e-08 63.2 80 43.8
CiPaw.15G014400 Carya illinoinensis HOM05D003387 ORTHO05D005400 2.0e-08 63.2 80 45.0
CiPaw.16G009800 Carya illinoinensis HOM05D003387 ORTHO05D005400 2.0e-08 63.2 80 45.0
Thhalv10004261m.g Eutrema salsugineum HOM05D003387 ORTHO05D005400 2.0e-08 63.2 80 43.8
Lj5g0027187 Lotus japonicus HOM05D003387 ORTHO05D005400 2.0e-08 63.2 107 39.3
Lalb_Chr19g0130201 Lupinus albus HOM05D003387 ORTHO05D005400 2.0e-08 63.2 107 37.4
Phvul.007G081900 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 2.0e-08 63.2 80 45.0
Pp3c14_14100 Physcomitrium patens HOM05D003387 ORTHO05D005400 2.0e-08 63.2 80 43.8
Pp3c14_17110 Physcomitrium patens HOM05D003387 ORTHO05D005400 2.0e-08 63.2 80 43.8
Psat1g100400 Pisum sativum HOM05D003387 ORTHO05D005400 2.0e-08 63.2 107 37.4
PGR042G1308 Punica granatum HOM05D003387 ORTHO05D005400 2.0e-08 63.2 80 43.8
Sabra05G0148200 Salix brachista HOM05D003387 ORTHO05D005400 2.0e-08 63.2 80 45.0
arahy.Tifrunner.gnm1.ann1.LGJ4PH Arachis hypogaea HOM05D003387 ORTHO05D005400 2.5e-08 62.8 80 46.2
arahy.Tifrunner.gnm1.ann1.RF14FM Arachis hypogaea HOM05D003387 ORTHO05D005400 2.5e-08 62.8 80 46.2
Carub.0001s3449 Capsella rubella HOM05D003387 ORTHO05D005400 2.5e-08 62.8 80 43.8
Duzib093G0739 Durio zibethinus HOM05D003387 ORTHO05D005400 2.5e-08 62.8 80 43.8
Lalb_Chr02g0141481 Lupinus albus HOM05D003387 ORTHO05D005400 2.5e-08 62.8 86 41.9
QL02p037738 Quercus lobata HOM05D003387 ORTHO05D005400 2.5e-08 62.8 80 45.0
QL02p038708 Quercus lobata HOM05D003387 ORTHO05D005400 2.5e-08 62.8 80 45.0
Sp1g32390 Schrenkiella parvula HOM05D003387 ORTHO05D005400 2.5e-08 62.8 80 42.5
TPR.G17034 Trifolium pratense HOM05D003387 ORTHO05D005400 2.5e-08 62.8 107 39.3
TAR628G0869 Trochodendron aralioides HOM05D003387 ORTHO05D005400 2.5e-08 62.8 80 45.0
Aqoxy2G00397 Aquilegia oxysepala HOM05D003387 ORTHO05D005400 3.3e-08 62.4 80 43.8
Cfa018305 Carpinus fangiana HOM05D003387 ORTHO05D005400 3.3e-08 62.4 80 43.8
Eucgr.F02695 Eucalyptus grandis HOM05D003387 ORTHO05D005400 3.3e-08 62.4 80 45.0
Glyma.10G223300 Glycine max HOM05D003387 ORTHO05D005400 3.3e-08 62.4 80 43.8
Glyma.20G168400 Glycine max HOM05D003387 ORTHO05D005400 3.3e-08 62.4 80 43.8
Gohir.A02G063500 Gossypium hirsutum HOM05D003387 ORTHO05D005400 3.3e-08 62.4 80 43.8
Gohir.D02G069100 Gossypium hirsutum HOM05D003387 ORTHO05D005400 3.3e-08 62.4 80 43.8
Gorai.005G078200 Gossypium raimondii HOM05D003387 ORTHO05D005400 3.3e-08 62.4 80 43.8
Medtr1g098530 Medicago truncatula HOM05D003387 ORTHO05D005400 3.3e-08 62.4 107 38.3
Sed0013690 Sechium edule HOM05D003387 ORTHO05D005400 3.3e-08 62.4 80 43.8
GSVIVG01034558001 Vitis vinifera HOM05D003387 ORTHO05D005400 3.3e-08 62.4 80 43.8
Aa31LG6G9950 Aethionema arabicum HOM05D003387 ORTHO05D005400 4.3e-08 62.0 80 43.8
AL1G51590 Arabidopsis lyrata HOM05D003387 ORTHO05D005400 4.3e-08 62.0 80 43.8
AT1G43190 Arabidopsis thaliana HOM05D003387 ORTHO05D005400 4.3e-08 62.0 80 43.8
Lj2g0008478 Lotus japonicus HOM05D003387 ORTHO05D005400 4.3e-08 62.0 107 38.3
Sc09g0006000 Simmondsia chinensis HOM05D015224 ORTHO05D388293 4.3e-08 62.0 93 40.9
Thecc.08G155500 Theobroma cacao HOM05D003387 ORTHO05D005400 4.3e-08 62.0 80 43.8
CARHR035330 Cardamine hirsuta HOM05D003387 ORTHO05D005400 5.7e-08 61.6 80 42.5
HanXRQChr05g0144181 Helianthus annuus HOM05D003387 ORTHO05D005400 5.7e-08 61.6 80 45.0
Potri.002G066000 Populus trichocarpa HOM05D003387 ORTHO05D005400 5.7e-08 61.6 80 43.8
Potri.005G194700 Populus trichocarpa HOM05D003387 ORTHO05D005400 5.7e-08 61.6 80 42.5
vmacro01482 Vaccinium macrocarpon HOM05D003387 ORTHO05D005400 5.7e-08 61.6 80 43.8
Lj7C377G3 Lonicera japonica HOM05D003387 ORTHO05D005400 7.4e-08 61.2 80 43.8
SalBow1G1267 Salvia bowleyana HOM05D003387 ORTHO05D005400 7.4e-08 61.2 80 43.8
Sc07g0005070 Simmondsia chinensis HOM05D003387 ORTHO05D011165 7.4e-08 61.2 77 39.0
THA.LOC104809206 Tarenaya hassleriana HOM05D003387 ORTHO05D005400 7.4e-08 61.2 80 45.0
Actinidia10635 Actinidia chinensis HOM05D003387 ORTHO05D005400 9.7e-08 60.8 90 42.2
Ah.05g168100 Amaranthus hybridus HOM05D003387 ORTHO05D005400 9.7e-08 60.8 80 45.0
ATR1126G056 Amborella trichopoda HOM05D003387 ORTHO05D005400 9.7e-08 60.8 80 41.2
Manes.18G093400 Manihot esculenta HOM05D003387 ORTHO05D005400 9.7e-08 60.8 80 42.5
TWI34G1705 Tripterygium wilfordii HOM05D003387 ORTHO05D005400 9.7e-08 60.8 80 41.2
Dinv25885 Davidia involucrata HOM05D003387 ORTHO05D005400 1.3e-07 60.5 80 43.8
Hund26682 Selenicereus undatus HOM05D003387 ORTHO05D005400 1.3e-07 60.5 80 45.0
TWI60G0696 Tripterygium wilfordii HOM05D003387 ORTHO05D005400 1.3e-07 60.5 80 42.5
DCAR_014445 Daucus carota HOM05D003387 ORTHO05D005400 1.7e-07 60.1 80 42.5
Medtr6g043520 Medicago truncatula HOM05D003387 ORTHO05D005400 1.7e-07 60.1 107 35.5
Sopen12g010100 Solanum pennellii HOM05D003387 ORTHO05D005400 1.7e-07 60.1 80 42.5
PGSC0003DMG400018824 Solanum tuberosum HOM05D003387 ORTHO05D005400 1.7e-07 60.1 80 42.5
Duzib116G0668 Durio zibethinus HOM05D003387 ORTHO05D005400 2.2e-07 59.7 80 42.5
Lalb_Chr06g0161681 Lupinus albus HOM05D003387 ORTHO05D005400 2.2e-07 59.7 80 42.5
SMO146G0032 Selaginella moellendorffii HOM05D003387 ORTHO05D005400 2.2e-07 59.7 80 42.5
TPR.G28008 Trifolium pratense HOM05D003387 ORTHO05D005400 2.2e-07 59.7 107 35.5
Lj8C37T13 Lonicera japonica HOM05D003387 ORTHO05D235663 2.8e-07 59.3 79 43.0
Lalb_Chr21g0305541 Lupinus albus HOM05D003387 ORTHO05D005400 2.8e-07 59.3 107 35.5
Solyc10g080720.2 Solanum lycopersicum HOM05D003387 ORTHO05D005400 2.8e-07 59.3 89 43.8
CSS0049572 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D005400 3.7e-07 58.9 80 42.5
Cc04_g09690 Coffea canephora HOM05D003387 ORTHO05D005400 3.7e-07 58.9 80 42.5
MBI16_g07738_MAGBIO Magnolia biondii HOM05D003387 ORTHO05D005400 3.7e-07 58.9 112 35.7
PGSC0003DMG400023660 Solanum tuberosum HOM05D003387 ORTHO05D005400 3.7e-07 58.9 89 42.7
HPP92_002768 Vanilla planifolia HOM05D003387 ORTHO05D005400 3.7e-07 58.9 80 43.8
CDE06G0083 Ceratophyllum demersum HOM05D003387 ORTHO05D005400 4.8e-07 58.5 80 43.8
Ciclev10001148m.g Citrus clementina HOM05D003387 ORTHO05D005400 4.8e-07 58.5 80 42.5
Os02g0789700 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D011165 4.8e-07 58.5 74 40.5
Sopen10g031260 Solanum pennellii HOM05D003387 ORTHO05D005400 4.8e-07 58.5 89 42.7
SEGI_27673 Sequoiadendron giganteum HOM05D003387 ORTHO05D005400 6.3e-07 58.2 114 36.0
CSS0039159 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D005400 8.2e-07 57.8 80 42.5
Peaxi162Scf00076g00821 Petunia axillaris HOM05D003387 ORTHO05D005400 8.2e-07 57.8 80 41.2
Manes.02G181600 Manihot esculenta HOM05D003387 ORTHO05D005400 1.1e-06 57.4 80 41.2
Medtr6g037550 Medicago truncatula HOM05D003387 ORTHO05D005400 1.1e-06 57.4 80 42.5
Migut.K00003 Erythranthe guttata HOM05D003387 ORTHO05D005400 1.8e-06 56.6 80 40.0
SGA_v2.0_scaffold274G46519 Striga asiatica HOM05D003387 ORTHO05D005400 1.8e-06 56.6 94 40.4
Atru.chr13.2064 Acer truncatum HOM05D003387 ORTHO05D005400 2.4e-06 56.2 80 40.0
ATR0115G003 Amborella trichopoda HOM05D003387 ORTHO05D005400 2.4e-06 56.2 77 41.6
Sc03g0006450 Simmondsia chinensis HOM05D008654 ORTHO05D011165 3.1e-06 55.8 52 50.0
PSO170G1597 Papaver somniferum HOM05D003387 ORTHO05D005400 4.1e-06 55.5 102 36.3
Sabra02G0052700 Salix brachista HOM05D003387 ORTHO05D005400 4.1e-06 55.5 80 41.2


User provided reference genes

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