Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0003220 Simmondsia chinensis HOM05D005106 ORTHO05D006224 4.9e-85 317.8 161 100.0
Sc04g0004790 Simmondsia chinensis HOM05D005106 ORTHO05D006224 1.1e-68 263.5 161 86.3
Medtr2g090655 Medicago truncatula HOM05D005106 ORTHO05D006224 4.2e-44 181.8 166 63.3
AUR62016818 Chenopodium quinoa HOM05D005106 ORTHO05D006224 3.5e-43 178.7 161 65.2
Gorai.005G199600 Gossypium raimondii HOM05D005106 ORTHO05D006224 3.5e-43 178.7 168 61.3
Nn1g06427 Nelumbo nucifera HOM05D005106 ORTHO05D006224 5.6e-41 171.4 162 59.3
MSTRG.25482 Avicennia marina HOM05D005106 ORTHO05D006224 2.8e-40 169.1 162 58.0
Nitab4.5_0002677g0020 Nicotiana tabacum HOM05D005106 ORTHO05D006224 6.2e-40 167.9 161 60.9
Sc04g0004750 Simmondsia chinensis HOM05D005106 ORTHO05D006224 2.4e-39 166.0 98 80.6
CANSAT64G0803 Cannabis sativa HOM05D005106 ORTHO05D006224 4.0e-39 165.2 161 59.0
FAN09G4502 Fragaria x ananassa HOM05D005106 ORTHO05D006224 6.9e-39 164.5 162 58.6
ClCG02G009520 Citrullus lanatus HOM05D005106 ORTHO05D006224 9.0e-39 164.1 164 58.5
PSO675G4288 Papaver somniferum HOM05D005106 ORTHO05D006224 2.0e-38 162.9 170 60.0
Lj3g0003979 Lotus japonicus HOM05D005106 ORTHO05D006224 5.8e-38 161.4 168 58.3
Nitab4.5_0000061g0200 Nicotiana tabacum HOM05D005106 ORTHO05D006224 5.8e-38 161.4 169 59.2
CiPaw.03G180900 Carya illinoinensis HOM05D005106 ORTHO05D006224 1.0e-37 160.6 168 61.9
Thecc.02G185300 Theobroma cacao HOM05D005106 ORTHO05D006224 1.3e-37 160.2 162 55.6
Eucgr.K01050 Eucalyptus grandis HOM05D005106 ORTHO05D006224 2.9e-37 159.1 159 56.6
unitig_37.g13100 Utricularia gibba HOM05D005106 ORTHO05D006224 2.9e-37 159.1 150 60.7
EL10As7g23802 Beta vulgaris HOM05D005106 ORTHO05D006224 4.9e-37 158.3 160 61.2
Actinidia22276 Actinidia chinensis HOM05D005106 ORTHO05D006224 6.5e-37 157.9 162 61.1
Gohir.D02G177800 Gossypium hirsutum HOM05D005106 ORTHO05D006224 1.9e-36 156.4 168 57.1
Duzib132G0108 Durio zibethinus HOM05D005106 ORTHO05D006224 2.5e-36 156.0 159 55.3
Gohir.A03G154800 Gossypium hirsutum HOM05D005106 ORTHO05D006224 3.2e-36 155.6 168 59.5
Carub.0008s0432 Capsella rubella HOM05D005106 ORTHO05D006224 4.2e-36 155.2 160 55.6
Psat5g273600 Pisum sativum HOM05D005106 ORTHO05D006224 4.2e-36 155.2 160 58.1
Glyma.12G206400 Glycine max HOM05D005106 ORTHO05D006224 5.5e-36 154.8 160 58.8
Actinidia06452 Actinidia chinensis HOM05D005106 ORTHO05D006224 3.0e-34 149.1 162 58.6
TPR.G6465 Trifolium pratense HOM05D005106 ORTHO05D006224 3.9e-34 148.7 164 57.3
Migut.C01328 Erythranthe guttata HOM05D005106 ORTHO05D006224 5.1e-34 148.3 158 55.1
CSS0035973 Camellia sinensis var. sinensis HOM05D005106 ORTHO05D006224 8.7e-34 147.5 160 58.1
AUR62010400 Chenopodium quinoa HOM05D005106 ORTHO05D006224 8.7e-34 147.5 183 53.0
CsaV3_4G010150 Cucumis sativus L. HOM05D005106 ORTHO05D006224 8.7e-34 147.5 160 54.4
Sed0010388 Sechium edule HOM05D005106 ORTHO05D006224 8.7e-34 147.5 160 55.6
Duzib132G0012 Durio zibethinus HOM05D005106 ORTHO05D006224 1.1e-33 147.1 147 55.8
Potri.007G137400 Populus trichocarpa HOM05D005106 ORTHO05D006224 2.5e-33 146.0 164 55.5
MD17G1234600 Malus domestica HOM05D005106 ORTHO05D006224 5.7e-33 144.8 150 56.7
PSO541G1716 Papaver somniferum HOM05D005106 ORTHO05D006224 7.4e-33 144.4 168 56.5
Ciclev10016365m.g Citrus clementina HOM05D005106 ORTHO05D006224 9.7e-33 144.1 161 57.8
Solyc02g062620.3 Solanum lycopersicum HOM05D005106 ORTHO05D006224 9.7e-33 144.1 162 56.8
Ah.11g045690 Amaranthus hybridus HOM05D005106 ORTHO05D006224 3.7e-32 142.1 161 50.3
Duzib052G0667 Durio zibethinus HOM05D005106 ORTHO05D006224 4.8e-32 141.7 160 55.6
FAN02G3272 Fragaria x ananassa HOM05D005106 ORTHO05D006224 4.8e-32 141.7 185 48.1
THA.LOC104801162 Tarenaya hassleriana HOM05D005106 ORTHO05D006224 6.3e-32 141.4 154 56.5
TWI23G0861 Tripterygium wilfordii HOM05D005106 ORTHO05D006224 1.8e-31 139.8 160 52.5
MELO3C026304.2 Cucumis melo HOM05D005106 ORTHO05D006224 3.1e-31 139.0 160 53.8
Dinv21367 Davidia involucrata HOM05D005106 ORTHO05D006224 3.1e-31 139.0 168 54.2
FvH4_6g26630 Fragaria vesca HOM05D005106 ORTHO05D006224 3.1e-31 139.0 160 51.9
Manes.13G142600 Manihot esculenta HOM05D005106 ORTHO05D006224 3.1e-31 139.0 162 53.7
CiPaw.04G128700 Carya illinoinensis HOM05D005106 ORTHO05D006224 1.5e-30 136.7 161 57.8
PGR142G3950 Punica granatum HOM05D005106 ORTHO05D006224 1.5e-30 136.7 150 54.0
SGA_v2.0_scaffold118G32565 Striga asiatica HOM05D005106 ORTHO05D006224 2.6e-30 136.0 174 52.9
TAR627G0282 Trochodendron aralioides HOM05D005106 ORTHO05D006224 2.6e-30 136.0 161 53.4
Thhalv10003260m.g Eutrema salsugineum HOM05D005106 ORTHO05D006224 3.4e-30 135.6 161 51.6
ECA238G0369 Erigeron canadensis HOM05D005106 ORTHO05D006224 1.7e-29 133.3 162 49.4
Glyma.13G294500 Glycine max HOM05D005106 ORTHO05D006224 1.7e-29 133.3 160 51.2
TWI59G0090 Tripterygium wilfordii HOM05D005106 ORTHO05D006224 2.9e-29 132.5 160 51.2
Prupe.3G134700 Prunus persica HOM05D005106 ORTHO05D006224 3.8e-29 132.1 150 51.3
Aqoxy1G02310 Aquilegia oxysepala HOM05D005106 ORTHO05D006224 5.0e-29 131.7 163 52.8
FAN05G0301 Fragaria x ananassa HOM05D005106 ORTHO05D006224 5.0e-29 131.7 202 43.1
Phvul.005G100900 Phaseolus vulgaris HOM05D005106 ORTHO05D006224 8.5e-29 131.0 166 54.2
DCAR_018109 Daucus carota HOM05D005106 ORTHO05D006224 1.1e-28 130.6 148 52.7
Potri.017G014600 Populus trichocarpa HOM05D005106 ORTHO05D006224 1.9e-28 129.8 162 50.0
Atru.chr6.2876 Acer truncatum HOM05D005106 ORTHO05D006224 9.3e-28 127.5 90 68.9
Lj7A285G44 Lonicera japonica HOM05D005106 ORTHO05D006224 1.6e-27 126.7 150 50.0
Peaxi162Scf00688g00358 Petunia axillaris HOM05D005106 ORTHO05D006224 3.6e-27 125.6 164 50.6
SEGI_07457 Sequoiadendron giganteum HOM05D005106 ORTHO05D006224 3.6e-27 125.6 161 49.7
Aa31LG5G3040 Aethionema arabicum HOM05D005106 ORTHO05D006224 1.3e-26 123.6 95 67.4
Cc10_g09480 Coffea canephora HOM05D005106 ORTHO05D006224 5.1e-26 121.7 124 59.7
Zm00001eb184540 Zea mays HOM05D005106 ORTHO05D006224 6.7e-26 121.3 150 50.0
A06p47380 Brassica napus HOM05D005106 ORTHO05D006224 2.5e-25 119.4 160 48.8
BraA06t27608Z Brassica rapa HOM05D005106 ORTHO05D006224 2.5e-25 119.4 160 48.8
Zm00001eb246940 Zea mays HOM05D005106 ORTHO05D006224 4.3e-25 118.6 161 49.7
Os02g0612300 Oryza sativa ssp. japonica HOM05D005106 ORTHO05D006224 2.2e-24 116.3 160 49.4
AUR62010422 Chenopodium quinoa HOM05D005106 ORTHO05D006224 8.2e-24 114.4 161 46.0
BcaC06g34582 Brassica carinata HOM05D005106 ORTHO05D006224 1.1e-23 114.0 160 47.5
BolC7t43217H Brassica oleracea HOM05D005106 ORTHO05D006224 1.1e-23 114.0 160 47.5
Sp2g09020 Schrenkiella parvula HOM05D005106 ORTHO05D006224 1.4e-23 113.6 160 47.5
BcaC06g31640 Brassica carinata HOM05D005106 ORTHO05D006224 1.8e-23 113.2 160 47.5
C07p26890 Brassica napus HOM05D005106 ORTHO05D006224 1.8e-23 113.2 160 47.5
Nitab4.5_0005272g0060 Nicotiana tabacum HOM05D005106 ORTHO05D006224 1.8e-23 113.2 166 48.2
CARHR179060 Cardamine hirsuta HOM05D005106 ORTHO05D006224 9.1e-23 110.9 159 45.9
AT5G44200 Arabidopsis thaliana HOM05D005106 ORTHO05D006224 1.2e-22 110.5 163 45.4
arahy.Tifrunner.gnm1.ann1.RWFH5R Arachis hypogaea HOM05D005106 ORTHO05D006224 2.2e-21 106.3 173 43.4
GSVIVG01020600001 Vitis vinifera HOM05D005106 ORTHO05D006224 2.9e-21 105.9 121 52.9
AL8G15820 Arabidopsis lyrata HOM05D005106 ORTHO05D006224 6.5e-21 104.8 159 44.7
HPP92_007900 Vanilla planifolia HOM05D005106 ORTHO05D006224 1.1e-20 104.0 160 45.6
arahy.Tifrunner.gnm1.ann1.UE89WV Arachis hypogaea HOM05D005106 ORTHO05D006224 2.5e-20 102.8 160 45.0
Nitab4.5_0000016g0650 Nicotiana tabacum HOM05D005106 ORTHO05D006224 5.1e-18 95.1 57 73.7
MD09G1242300 Malus domestica HOM05D005106 ORTHO05D006224 8.8e-18 94.4 74 64.9
Mapoly0001s0392 Marchantia polymorpha HOM05D005106 ORTHO05D006224 2.6e-17 92.8 153 45.8
Rhsim05G0079400 Rhododendron simsii HOM05D005106 ORTHO05D006224 7.4e-17 91.3 168 40.5
VMungo1080G0911 Vigna mungo HOM05D005106 ORTHO05D006224 9.7e-17 90.9 125 49.6
Sc04g0004760 Simmondsia chinensis HOM05D005106 ORTHO05D006224 2.2e-16 89.7 55 81.8
SHI10494 Sapria himalayana HOM05D005106 ORTHO05D006224 1.4e-15 87.0 92 53.3
Pp3c17_11470 Physcomitrium patens HOM05D005106 ORTHO05D006224 3.1e-15 85.9 151 43.0
Cpa.g.sc83.88 Carica papaya HOM05D005106 ORTHO05D006224 4.1e-15 85.5 116 50.0
FAN14G3298 Fragaria x ananassa HOM05D005106 ORTHO05D006224 6.9e-15 84.7 158 39.2
HanXRQChr07g0195561 Helianthus annuus HOM05D005106 ORTHO05D006224 1.0e-13 80.9 161 38.5
AagrBONN_evm.TU.Sc2ySwM_362.2111 Anthoceros agrestis HOM05D005106 ORTHO05D006224 2.9e-13 79.3 78 59.0
RcHm_v2.0_Chr2g0127341 Rosa chinensis HOM05D005106 ORTHO05D006224 2.9e-13 79.3 93 55.9
Hund09671 Selenicereus undatus HOM05D005106 ORTHO05D006224 2.5e-12 76.3 125 40.8
COL.COLO4_18047 Corchorus olitorius HOM05D005106 ORTHO05D006224 1.2e-11 73.9 123 42.3
CBR_g4062 Chara braunii HOM05D005106 ORTHO05D006224 2.7e-11 72.8 152 38.8
CAN.G53.9 Capsicum annuum HOM05D005106 ORTHO05D006224 9.7e-09 64.3 85 55.3
ATR0665G640 Amborella trichopoda HOM05D005106 ORTHO05D006224 4.8e-08 62.0 30 90.0
EL10Ac3g06463 Beta vulgaris HOM05D005106 ORTHO05D006224 4.8e-08 62.0 30 90.0
EL10Ac5g12160 Beta vulgaris HOM05D005106 ORTHO05D006224 4.8e-08 62.0 30 90.0
AUR62010418 Chenopodium quinoa HOM05D005106 ORTHO05D006224 4.8e-08 62.0 30 90.0
HanXRQChr14g0454171 Helianthus annuus HOM05D005106 ORTHO05D006224 4.8e-08 62.0 36 77.8
Lalb_Chr14g0367111 Lupinus albus HOM05D005106 ORTHO05D006224 4.8e-08 62.0 30 90.0
Lalb_Chr22g0356721 Lupinus albus HOM05D005106 ORTHO05D006224 4.8e-08 62.0 30 90.0
MBI07_g29116_MAGBIO Magnolia biondii HOM05D005106 ORTHO05D006224 4.8e-08 62.0 30 90.0
Nitab4.5_0007033g0060 Nicotiana tabacum HOM05D005106 ORTHO05D006224 4.8e-08 62.0 30 90.0
Sabra17G0011800 Salix brachista HOM05D005106 ORTHO05D006224 4.8e-08 62.0 30 90.0
SalBow7G4324 Salvia bowleyana HOM05D005106 ORTHO05D006224 4.8e-08 62.0 30 90.0
Sopen02g013650 Solanum pennellii HOM05D005106 ORTHO05D006224 4.8e-08 62.0 30 90.0
vmacro09002 Vaccinium macrocarpon HOM05D005106 ORTHO05D006224 4.8e-08 62.0 30 90.0
GSVIVG01020599001 Vitis vinifera HOM05D005106 ORTHO05D006224 4.8e-08 62.0 30 90.0
Ca_01483_v3 Cicer arietinum L. HOM05D005106 ORTHO05D006224 1.1e-07 60.8 30 86.7
ClCG09G011570 Citrullus lanatus HOM05D005106 ORTHO05D006224 1.1e-07 60.8 30 86.7
Cc10_g09490 Coffea canephora HOM05D005106 ORTHO05D006224 1.1e-07 60.8 40 75.0
Cpa.g.sc83.87 Carica papaya HOM05D005106 ORTHO05D006224 2.4e-07 59.7 35 74.3
Cre10.g437850 Chlamydomonas reinhardtii HOM05D005106 ORTHO05D006224 3.1e-07 59.3 55 58.2
SMO339G0037 Selaginella moellendorffii HOM05D005106 ORTHO05D006224 7.0e-07 58.2 36 75.0
Lsat_1_v5_gn_4_146681 Lactuca sativa HOM05D005106 ORTHO05D006224 1.2e-06 57.4 30 83.3
HanXRQChr14g0454161 Helianthus annuus HOM05D005106 ORTHO05D006224 1.6e-06 57.0 88 40.9


User provided reference genes

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