Gene: AT5G44200

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G44200
  • Transcript Identifier AT5G44200.2
  • Gene Type Coding gene
  • Location Chr5 : 17802062-17803875 : negative

Gene Family Information

  • ID HOM05D005106
  • #Genes/#Species 147/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G44200.2
  • symbol CBP20
  • Alias ATCBP20
  • uniprot Q9XFD1

Descriptions

  • Description CAP-binding protein 20
  • Computational description CAP-binding protein 20 (CBP20); FUNCTIONS IN: RNA binding, RNA cap binding; INVOLVED IN: RNA metabolic process, RNA splicing, via endonucleolytic cleavage and ligation, primary microRNA processing; LOCATED IN: mRNA cap binding complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G46020.1); Has 1672 Blast hits to 1670 proteins in 70 species: Archae - 0; Bacteria - 6; Metazoa - 7; Fungi - 2; Plants - 1623; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
  • Computational description CAP-binding protein 20 (CBP20); FUNCTIONS IN: RNA binding, RNA cap binding; INVOLVED IN: RNA metabolic process, RNA splicing, via endonucleolytic cleavage and ligation, primary microRNA processing; LOCATED IN: mRNA cap binding complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G46020.1); Has 9575 Blast hits to 9549 proteins in 2190 species: Archae - 96; Bacteria - 7682; Metazoa - 239; Fungi - 361; Plants - 280; Viruses - 2; Other Eukaryotes - 915 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045292
IEA
Gene OntologymRNA cis splicing, via spliceosome
GO:0045292
IEA
InterPromRNA cis splicing, via spliceosome
GO:0031047
IEA
GOA Databasegene silencing by RNA
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0000398
IBA
Gene OntologymRNA splicing, via spliceosome1
GO:0051607
IMP
Gene Ontologydefense response to virus2
GO:0031053
IMP
Gene Ontologyprimary miRNA processing3
GO:0000394
IMP
Gene OntologyRNA splicing, via endonucleolytic cleavage and ligation3
GO:0016070
TAS
Gene OntologyRNA metabolic process4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000339
IEA
GOA DatabaseRNA cap binding
GO:0000339
IDA
IBA
Gene OntologyRNA cap binding1 5
GO:0000339
IEA
InterProRNA cap binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0005515
IPI
Gene Ontologyprotein binding6

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005846
IEA
GOA Databasenuclear cap binding complex
GO:0005846
IBA
Gene Ontologynuclear cap binding complex1
GO:0005846
IEA
InterPronuclear cap binding complex
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005845
TAS
Gene OntologymRNA cap binding complex7

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035979 RNA-binding domain superfamily
IPR034148 NCBP2, RNA recognition motif
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR000504 RNA recognition motif domain
IPR027157 Nuclear cap-binding protein subunit 2
Mapman id Description
16.1.3.2 RNA processing.RNA 5'-end capping.CBP80-CBP20 mRNA Cap-Binding complex (CBC).component CBP20