Gene: TPR.G6465

General Information

Structural Information

  • Species Trifolium pratense
  • Gene Identifier TPR.G6465
  • Transcript Identifier TPR.T6693
  • Gene Type Coding gene
  • Location Tp57577_TGAC_v2_LG7 : 29907311-29910465 : negative

Gene Family Information

  • ID HOM05D005106
  • #Genes/#Species 147/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Tp57577_TGAC_v2_mRNA6693.v2
  • id Tp57577_TGAC_v2_gene6465.v2
  • pacid 35955107
  • uniprot A0A2K3N3S4

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0051607
ISO
PLAZA Integrative Orthologydefense response to virus AT5G44200
GO:0031053
ISO
PLAZA Integrative Orthologyprimary miRNA processing AT5G44200
GO:0000394
ISO
PLAZA Integrative OrthologyRNA splicing, via endonucleolytic cleavage and ligation AT5G44200
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process AT5G44200
GO:0045292
IEA
GOA DatabasemRNA cis splicing, via spliceosome
GO:0045292
IEA
InterPromRNA cis splicing, via spliceosome
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G44200
GO:0000339
IEA
GOA DatabaseRNA cap binding
GO:0000339
IEA
InterProRNA cap binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005846
IEA
GOA Databasenuclear cap binding complex
GO:0005846
IEA
InterPronuclear cap binding complex
GO:0005845
ISO
PLAZA Integrative OrthologymRNA cap binding complex AT5G44200
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR034148 NCBP2, RNA recognition motif
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR027157 Nuclear cap-binding protein subunit 2
IPR035979 RNA-binding domain superfamily
Mapman id Description
16.1.3.2 RNA processing.RNA 5'-end capping.CBP80-CBP20 mRNA Cap-Binding complex (CBC).component CBP20