Gene: Carub.0008s0432

General Information

Structural Information

  • Species Capsella rubella
  • Gene Identifier Carub.0008s0432
  • Transcript Identifier Carub.0008s0432.1
  • Gene Type Coding gene
  • Location scaffold_8 : 1821972-1823818 : positive

Gene Family Information

  • ID HOM05D005106
  • #Genes/#Species 147/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Carub.0008s0432.v1.1
  • pacid 39251964
  • synonym Carubv10026861m.g

Descriptions

  • Description K12883 - nuclear cap-binding protein subunit 2 (NCBP2, CBP20)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045292
IEA
InterPromRNA cis splicing, via spliceosome
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process AT5G44200
GO:0000394
ISO
PLAZA Integrative OrthologyRNA splicing, via endonucleolytic cleavage and ligation AT5G44200
GO:0031053
ISO
PLAZA Integrative Orthologyprimary miRNA processing AT5G44200
GO:0051607
ISO
PLAZA Integrative Orthologydefense response to virus AT5G44200

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0000339
IEA
InterProRNA cap binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G44200

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005846
IEA
InterPronuclear cap binding complex
GO:0005845
ISO
PLAZA Integrative OrthologymRNA cap binding complex AT5G44200

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR034148 NCBP2, RNA recognition motif
IPR035979 RNA-binding domain superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR027157 Nuclear cap-binding protein subunit 2
IPR000504 RNA recognition motif domain
Mapman id Description
16.1.3.2 RNA processing.RNA 5'-end capping.CBP80-CBP20 mRNA Cap-Binding complex (CBC).component CBP20