Gene: Os02g0612300

General Information

Structural Information

  • Species Oryza sativa ssp. japonica
  • Gene Identifier Os02g0612300
  • Transcript Identifier Os02t0612300-01
  • Gene Type Coding gene
  • Location chr02 : 24100438-24103298 : negative

Gene Family Information

  • ID HOM05D005106
  • #Genes/#Species 147/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Os02t0612300-01
  • MSU-ID LOC_Os02g39890.1
  • MSU-ID LOC_Os02g39890.2
  • uniprot Q84L14

Descriptions

  • Description Similar to Nuclear cap binding protein subunit 2 (20 kDa nuclear cap binding protein) (NCBP 20 kDa subunit) (CBP20).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process AT5G44200
GO:0045292
IEA
GOA DatabasemRNA cis splicing, via spliceosome
GO:0045292
IEA
InterPromRNA cis splicing, via spliceosome
GO:0000394
IEA
GOA DatabaseRNA splicing, via endonucleolytic cleavage and ligation
GO:0031053
IEA
GOA Databaseprimary miRNA processing
GO:0051607
IEA
GOA Databasedefense response to virus
GO:0000398
IBA
GOA DatabasemRNA splicing, via spliceosome
GO:0031047
IEA
GOA Databasegene silencing by RNA
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000339
IBA
IEA
GOA DatabaseRNA cap binding
GO:0000339
IEA
InterProRNA cap binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G44200
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005845
ISO
PLAZA Integrative OrthologymRNA cap binding complex AT5G44200
GO:0005846
IBA
IEA
GOA Databasenuclear cap binding complex
GO:0005846
IEA
InterPronuclear cap binding complex
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035979 RNA-binding domain superfamily
IPR000504 RNA recognition motif domain
IPR034148 NCBP2, RNA recognition motif
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR027157 Nuclear cap-binding protein subunit 2
Mapman id Description
16.1.3.2 RNA processing.RNA 5'-end capping.CBP80-CBP20 mRNA Cap-Binding complex (CBC).component CBP20