Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0004890 Simmondsia chinensis HOM05D006779 ORTHO05D008491 3.0e-121 438.7 252 100.0
EL10Ac3g06870 Beta vulgaris HOM05D006779 ORTHO05D008491 2.2e-79 299.7 254 74.8
AUR62034187 Chenopodium quinoa HOM05D006779 ORTHO05D008491 3.4e-77 292.4 254 72.4
QL11p037315 Quercus lobata HOM05D006779 ORTHO05D008491 5.0e-76 288.5 251 72.5
GSVIVG01031784001 Vitis vinifera HOM05D006779 ORTHO05D008491 6.5e-76 288.1 255 70.6
Haze_01903 Corylus avellana HOM05D006779 ORTHO05D008491 2.7e-74 282.7 251 70.1
Ah.04g152710 Amaranthus hybridus HOM05D006779 ORTHO05D008491 3.6e-74 282.3 249 64.7
CiPaw.05G054000 Carya illinoinensis HOM05D006779 ORTHO05D008491 7.9e-74 281.2 252 69.4
AUR62022456 Chenopodium quinoa HOM05D006779 ORTHO05D008491 3.9e-73 278.9 294 63.3
Dinv23582 Davidia involucrata HOM05D006779 ORTHO05D008491 1.1e-72 277.3 265 65.7
Potri.009G105500 Populus trichocarpa HOM05D006779 ORTHO05D008491 7.4e-72 274.6 254 67.3
Sabra09G0080600 Salix brachista HOM05D006779 ORTHO05D008491 9.7e-72 274.2 254 67.3
Thecc.02G097400 Theobroma cacao HOM05D006779 ORTHO05D008491 9.7e-72 274.2 250 70.4
Hund00325 Selenicereus undatus HOM05D006779 ORTHO05D008491 1.7e-71 273.5 252 69.8
CsaV3_7G008730 Cucumis sativus L. HOM05D006779 ORTHO05D008491 4.8e-71 271.9 253 68.0
Eucgr.I01169 Eucalyptus grandis HOM05D006779 ORTHO05D008491 6.3e-71 271.6 251 65.7
Ciclev10029963m.g Citrus clementina HOM05D006779 ORTHO05D008491 3.1e-70 269.2 253 66.0
CSS0011815 Camellia sinensis var. sinensis HOM05D000591 ORTHO05D000579 9.1e-70 267.7 255 62.4
FAN20G2937 Fragaria x ananassa HOM05D006779 ORTHO05D008491 3.4e-69 265.8 252 63.9
FAN24G0787 Fragaria x ananassa HOM05D006779 ORTHO05D008491 3.4e-69 265.8 252 64.3
FAN15G3147 Fragaria x ananassa HOM05D006779 ORTHO05D008491 7.7e-69 264.6 252 63.5
FvH4_2g06680 Fragaria vesca HOM05D006779 ORTHO05D008491 1.0e-68 264.2 252 63.9
Atru.chr5.2773 Acer truncatum HOM05D006779 ORTHO05D008491 1.3e-68 263.8 254 68.1
Prupe.8G119200 Prunus persica HOM05D006779 ORTHO05D008491 1.7e-68 263.5 251 68.9
RcHm_v2.0_Chr6g0258731 Rosa chinensis HOM05D006779 ORTHO05D008491 1.1e-67 260.8 252 62.3
Cc02_g18560 Coffea canephora HOM05D006779 ORTHO05D008491 1.4e-67 260.4 262 64.9
PGR142G0644 Punica granatum HOM05D006779 ORTHO05D008491 1.9e-67 260.0 254 65.0
Sed0011670 Sechium edule HOM05D006779 ORTHO05D008491 1.9e-67 260.0 251 65.3
Gohir.A03G191700 Gossypium hirsutum HOM05D006779 ORTHO05D008491 3.2e-67 259.2 250 67.6
MD05G1075500 Malus domestica HOM05D006779 ORTHO05D008491 3.2e-67 259.2 251 68.1
Actinidia00459 Actinidia chinensis HOM05D006779 ORTHO05D008491 4.2e-67 258.8 261 60.2
Gorai.005G240600 Gossypium raimondii HOM05D006779 ORTHO05D008491 5.5e-67 258.5 250 67.6
Manes.15G142500 Manihot esculenta HOM05D006779 ORTHO05D008491 5.5e-67 258.5 251 66.1
Gohir.D02G212600 Gossypium hirsutum HOM05D006779 ORTHO05D008491 1.2e-66 257.3 250 67.6
Lalb_Chr09g0328181 Lupinus albus HOM05D006779 ORTHO05D008491 1.8e-65 253.4 251 65.3
arahy.Tifrunner.gnm1.ann1.8ZG09Z Arachis hypogaea HOM05D006779 ORTHO05D008491 5.1e-65 251.9 252 63.1
COL.COLO4_32686 Corchorus olitorius HOM05D006779 ORTHO05D008491 5.1e-65 251.9 250 68.8
Dinv42131 Davidia involucrata HOM05D006779 ORTHO05D008491 8.8e-65 251.1 261 61.7
TWI79G0004 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 1.1e-64 250.8 259 66.8
vmacro02181 Vaccinium macrocarpon HOM05D006779 ORTHO05D008491 1.1e-64 250.8 292 55.8
PGSC0003DMG400025811 Solanum tuberosum HOM05D006779 ORTHO05D008491 2.6e-64 249.6 263 60.5
MSTRG.16763 Avicennia marina HOM05D006779 ORTHO05D008491 3.3e-64 249.2 251 63.7
Solyc01g108430.3 Solanum lycopersicum HOM05D006779 ORTHO05D008491 3.3e-64 249.2 263 60.1
Phvul.007G247000 Phaseolus vulgaris HOM05D006779 ORTHO05D008491 4.4e-64 248.8 250 58.4
Glyma.01G146900 Glycine max HOM05D006779 ORTHO05D008491 5.7e-64 248.4 250 62.4
Glyma.10G112900 Glycine max HOM05D006779 ORTHO05D008491 5.7e-64 248.4 250 62.4
Sopen01g050660 Solanum pennellii HOM05D006779 ORTHO05D008491 9.7e-64 247.7 263 59.7
Nitab4.5_0005583g0020 Nicotiana tabacum HOM05D006779 ORTHO05D008491 4.8e-63 245.4 263 62.0
CAN.G322.16 Capsicum annuum HOM05D006779 ORTHO05D008491 8.2e-63 244.6 253 65.2
Nitab4.5_0004334g0110 Nicotiana tabacum HOM05D006779 ORTHO05D008491 1.1e-62 244.2 263 60.8
SalBow6G0615 Salvia bowleyana HOM05D006779 ORTHO05D008491 1.1e-62 244.2 258 62.4
TWI31G0027 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 7.0e-62 241.5 259 65.3
Aqoxy6G01411 Aquilegia oxysepala HOM05D006779 ORTHO05D008491 9.1e-62 241.1 261 62.5
Lj5C207T4 Lonicera japonica HOM05D006779 ORTHO05D008491 9.1e-62 241.1 264 63.6
Oeu064516.1 Olea europaea HOM05D006779 ORTHO05D008491 1.5e-61 240.4 260 56.5
Glyma.02G159500 Glycine max HOM05D006779 ORTHO05D008491 2.0e-61 240.0 251 61.8
Rhsim11G0168500 Rhododendron simsii HOM05D006779 ORTHO05D008491 3.5e-61 239.2 288 53.8
arahy.Tifrunner.gnm1.ann1.T066AP Arachis hypogaea HOM05D006779 ORTHO05D008491 5.9e-61 238.4 253 60.5
CANSAT25G0176 Cannabis sativa HOM05D006779 ORTHO05D008491 7.7e-61 238.0 254 63.0
Migut.B00314 Erythranthe guttata HOM05D006779 ORTHO05D008491 7.7e-61 238.0 263 58.2
Nn5g30192 Nelumbo nucifera HOM05D006779 ORTHO05D008491 7.7e-61 238.0 260 62.3
DCAR_029018 Daucus carota HOM05D000144 ORTHO05D003364 5.0e-60 235.3 265 63.0
ClCG02G005780 Citrullus lanatus HOM05D006779 ORTHO05D008491 6.5e-60 235.0 293 56.0
MBI02_g21199_MAGBIO Magnolia biondii HOM05D006779 ORTHO05D008491 6.5e-60 235.0 272 58.5
Psat7g121840 Pisum sativum HOM05D006779 ORTHO05D008491 3.2e-59 232.6 254 61.0
arahy.Tifrunner.gnm1.ann1.QJKD6Y Arachis hypogaea HOM05D006779 ORTHO05D008491 9.4e-59 231.1 252 61.1
Ca_18655_v3 Cicer arietinum L. HOM05D006779 ORTHO05D008491 1.6e-58 230.3 250 61.2
Aa31LG10G4420 Aethionema arabicum HOM05D006779 ORTHO05D008491 3.6e-58 229.2 250 59.2
unitig_60.g25783 Utricularia gibba HOM05D006779 ORTHO05D008491 8.0e-58 228.0 254 60.6
SGA_v2.0_scaffold90G27693 Striga asiatica HOM05D006779 ORTHO05D008491 3.9e-57 225.7 260 55.0
SGA_v2.0_scaffold90G27688 Striga asiatica HOM05D006779 ORTHO05D008491 5.2e-57 225.3 260 55.0
Peaxi162Scf00016g01637 Petunia axillaris HOM05D006779 ORTHO05D008491 6.7e-57 224.9 248 60.5
HPP92_004257 Vanilla planifolia HOM05D006779 ORTHO05D008491 1.1e-56 224.2 260 61.9
Lj4g0006122 Lotus japonicus HOM05D006779 ORTHO05D008491 1.5e-56 223.8 250 61.2
HanXRQChr10g0303251 Helianthus annuus HOM05D006779 ORTHO05D008491 5.7e-56 221.9 250 58.0
ECA234G4762 Erigeron canadensis HOM05D006779 ORTHO05D008491 2.2e-55 219.9 254 56.3
Thhalv10011741m.g Eutrema salsugineum HOM05D006779 ORTHO05D008491 9.1e-54 214.5 254 56.7
Sp1g36470 Schrenkiella parvula HOM05D006779 ORTHO05D008491 3.5e-53 212.6 253 56.9
Carub.0001s3879 Capsella rubella HOM05D006779 ORTHO05D008491 2.2e-52 209.9 254 60.2
AT1G49590 Arabidopsis thaliana HOM05D006779 ORTHO05D008491 3.8e-52 209.1 253 58.1
PSO541G4058 Papaver somniferum HOM05D006779 ORTHO05D008491 1.2e-50 204.1 266 57.5
A06p03540 Brassica napus HOM05D006779 ORTHO05D008491 2.1e-50 203.4 255 54.5
Medtr4g086640 Medicago truncatula HOM05D006779 ORTHO05D008491 1.8e-49 200.3 252 58.3
AL1G56960 Arabidopsis lyrata HOM05D006779 ORTHO05D008491 2.0e-48 196.8 266 54.5
BraA06t23562Z Brassica rapa HOM05D006779 ORTHO05D008491 3.4e-48 196.1 253 53.8
Lsat_1_v5_gn_5_113321 Lactuca sativa HOM05D006779 ORTHO05D008491 7.5e-48 194.9 259 49.8
BolC6t35591H Brassica oleracea HOM05D006779 ORTHO05D008491 9.7e-48 194.5 252 53.2
PSO675G5018 Papaver somniferum HOM05D006779 ORTHO05D008491 1.7e-47 193.7 266 56.0
CDE06G1966 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 4.8e-47 192.2 249 50.2
BcaNung06359 Brassica carinata HOM05D006779 ORTHO05D008491 1.4e-46 190.7 254 52.0
SHI05379 Sapria himalayana HOM05D006779 ORTHO05D008491 1.7e-44 183.7 251 55.4
MELO3C018438.2 Cucumis melo HOM05D006779 ORTHO05D008491 2.5e-43 179.9 205 62.0
Mapoly0157s0003 Marchantia polymorpha HOM05D006779 ORTHO05D008491 4.4e-40 169.1 298 46.6
Zm00001eb373090 Zea mays HOM05D006779 ORTHO05D008491 3.1e-38 162.9 251 49.4
ATR0097G032 Amborella trichopoda HOM05D006779 ORTHO05D008491 2.7e-37 159.8 242 45.5
AagrBONN_evm.TU.Sc2ySwM_344.4302 Anthoceros agrestis HOM05D006779 ORTHO05D008491 1.7e-36 157.1 287 45.3
AUR62042088 Chenopodium quinoa HOM05D006779 ORTHO05D008491 2.3e-33 146.7 204 57.8
Pp3c14_26080 Physcomitrium patens HOM05D006779 ORTHO05D008491 3.0e-33 146.4 293 44.7
FAN20G1913 Fragaria x ananassa HOM05D006779 ORTHO05D008491 1.5e-32 144.1 152 61.2
TAR628G0388 Trochodendron aralioides HOM05D006779 ORTHO05D008491 2.4e-30 136.7 94 75.5
C06p04620 Brassica napus HOM05D006779 ORTHO05D008491 5.9e-29 132.1 208 51.9
HPP92_004235 Vanilla planifolia HOM05D006779 ORTHO05D008491 2.3e-28 130.2 214 57.0
Cpa.g.sc62.36 Carica papaya HOM05D006779 ORTHO05D008491 8.6e-28 128.3 94 69.1
SMO367G0139 Selaginella moellendorffii HOM05D006779 ORTHO05D008491 2.5e-27 126.7 286 40.2
CBR_g17671 Chara braunii HOM05D006779 ORTHO05D008491 3.3e-27 126.3 335 37.0
CSS0024784 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 3.4e-24 116.3 187 45.5
TPR.G23511 Trifolium pratense HOM05D006779 ORTHO05D008491 1.3e-23 114.4 70 78.6
CSS0021002 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 8.3e-23 111.7 187 43.9
CARHR039640 Cardamine hirsuta HOM05D006779 ORTHO05D008491 8.3e-23 111.7 151 58.3
Os06g0215200 Oryza sativa ssp. japonica HOM05D006779 ORTHO05D008491 9.2e-22 108.2 70 71.4
TPR.G23531 Trifolium pratense HOM05D006779 ORTHO05D008491 2.7e-21 106.7 150 53.3
CDE03G0027 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 1.4e-17 94.4 249 36.1
Ah.08g219340 Amaranthus hybridus HOM05D006779 ORTHO05D008491 6.8e-17 92.0 95 60.0
EL10Ac9g20940 Beta vulgaris HOM05D002686 ORTHO05D003222 1.7e-12 77.4 89 56.2
TAR628G1516 Trochodendron aralioides HOM05D006779 ORTHO05D008491 2.3e-12 77.0 119 47.9
CSS0005405 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 6.6e-12 75.5 87 56.3
CSS0011003 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 6.6e-12 75.5 87 56.3
CSS0022737 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 1.9e-11 73.9 183 37.2
CSS0034996 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 5.6e-11 72.4 187 37.4


User provided reference genes

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