Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0002610 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.7e-106 389.4 202 100.0
Sc09g0007220 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.2e-16 90.9 88 54.5
Sc21g0004200 Simmondsia chinensis HOM05D012448 ORTHO05D011165 4.6e-16 89.0 117 41.0
Sc02g0004440 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.8e-15 87.0 84 52.4
Sc15g0003120 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.8e-15 87.0 93 47.3
Sc22g0004350 Simmondsia chinensis HOM05D028099 ORTHO05D011165 2.3e-15 86.7 159 34.6
Sc26g0003450 Simmondsia chinensis HOM05D031019 ORTHO05D011165 8.7e-15 84.7 194 31.4
Sc16g0004730 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.5e-14 84.0 116 42.2
Sc13g0008890 Simmondsia chinensis HOM05D031019 ORTHO05D011165 4.3e-14 82.4 207 33.3
Sc16g0004600 Simmondsia chinensis HOM05D008654 ORTHO05D011165 4.3e-14 82.4 87 48.3
Sc07g0005580 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.3e-13 80.9 93 44.1
Sc20g0003080 Simmondsia chinensis HOM05D012448 ORTHO05D011165 2.8e-13 79.7 102 40.2
Sc07g0005070 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.1e-12 77.8 116 36.2
Sc12g0007970 Simmondsia chinensis HOM05D003387 ORTHO05D011165 2.4e-12 76.6 118 38.1
Sc04g0006840 Simmondsia chinensis HOM05D003387 ORTHO05D011165 5.3e-12 75.5 208 32.7
Sc18g0004320 Simmondsia chinensis HOM05D031019 ORTHO05D011165 1.5e-11 73.9 78 50.0
Sc16g0004050 Simmondsia chinensis HOM05D003387 ORTHO05D005400 4.5e-11 72.4 74 50.0
Sc03g0007670 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.0e-10 71.2 80 43.8
EL10Ac6g15237 Beta vulgaris HOM05D003387 ORTHO05D005400 1.7e-10 70.5 74 45.9
Hund19618 Selenicereus undatus HOM05D003387 ORTHO05D005400 2.9e-10 69.7 74 47.3
Sc08g0005810 Simmondsia chinensis HOM05D012448 ORTHO05D011165 2.9e-10 69.7 193 28.0
Sc14g0005430 Simmondsia chinensis HOM05D012448 ORTHO05D011165 2.9e-10 69.7 124 30.6
Sc22g0003270 Simmondsia chinensis HOM05D012448 ORTHO05D011165 3.8e-10 69.3 173 28.9
Sc04g0003810 Simmondsia chinensis HOM05D012448 ORTHO05D011165 6.5e-10 68.6 96 34.4
Ah.02g123810 Amaranthus hybridus HOM05D003387 ORTHO05D005400 8.4e-10 68.2 74 44.6
Sc03g0005120 Simmondsia chinensis HOM05D015224 ORTHO05D011165 8.4e-10 68.2 81 40.7
Sc01g0004380 Simmondsia chinensis HOM05D031019 ORTHO05D011165 1.1e-09 67.8 76 48.7
Sc07g0004700 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.9e-09 67.0 92 31.5
Sc16g0005390 Simmondsia chinensis HOM05D000143 ORTHO05D000072 4.2e-09 65.9 105 41.9
Sc25g0003800 Simmondsia chinensis HOM05D003387 ORTHO05D011165 4.2e-09 65.9 90 40.0
Cfa002795 Carpinus fangiana HOM05D003387 ORTHO05D005400 5.5e-09 65.5 74 45.9
MBI16_g07738_MAGBIO Magnolia biondii HOM05D003387 ORTHO05D005400 7.1e-09 65.1 88 40.9
Sc11g0004550 Simmondsia chinensis HOM05D012448 ORTHO05D011165 7.1e-09 65.1 95 36.8
GSVIVG01022282001 Vitis vinifera HOM05D003387 ORTHO05D005400 7.1e-09 65.1 74 45.9
Eucgr.F04205 Eucalyptus grandis HOM05D003387 ORTHO05D005400 9.3e-09 64.7 74 44.6
Sc09g0006480 Simmondsia chinensis HOM05D012448 ORTHO05D011165 9.3e-09 64.7 92 35.9
Thecc.08G155500 Theobroma cacao HOM05D003387 ORTHO05D005400 9.3e-09 64.7 74 45.9
Dinv25885 Davidia involucrata HOM05D003387 ORTHO05D005400 1.2e-08 64.3 74 45.9
Os02g0789700 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D011165 1.6e-08 63.9 86 36.0
QL06p031237 Quercus lobata HOM05D003387 ORTHO05D005400 1.6e-08 63.9 74 45.9
CARHR035330 Cardamine hirsuta HOM05D003387 ORTHO05D005400 2.1e-08 63.5 116 34.5
HanXRQChr05g0144181 Helianthus annuus HOM05D003387 ORTHO05D005400 2.1e-08 63.5 83 42.2
Manes.18G093400 Manihot esculenta HOM05D003387 ORTHO05D005400 2.1e-08 63.5 74 44.6
Nn1g06041 Nelumbo nucifera HOM05D003387 ORTHO05D005400 2.1e-08 63.5 74 45.9
Os01g0867800 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D005400 2.1e-08 63.5 74 44.6
Aqoxy2G00397 Aquilegia oxysepala HOM05D003387 ORTHO05D005400 2.7e-08 63.2 74 45.9
Cc04_g09690 Coffea canephora HOM05D003387 ORTHO05D005400 2.7e-08 63.2 74 44.6
Nn5g28791 Nelumbo nucifera HOM05D003387 ORTHO05D005400 2.7e-08 63.2 74 45.9
PSO700G0143 Papaver somniferum HOM05D003387 ORTHO05D005400 2.7e-08 63.2 74 44.6
Sc21g0003950 Simmondsia chinensis HOM05D015224 ORTHO05D011165 2.7e-08 63.2 77 44.2
TAR628G0869 Trochodendron aralioides HOM05D003387 ORTHO05D005400 2.7e-08 63.2 74 45.9
Zm00001eb348540 Zea mays HOM05D003387 ORTHO05D005400 2.7e-08 63.2 74 41.9
CSS0049572 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D005400 3.5e-08 62.8 74 44.6
Haze_25093 Corylus avellana HOM05D003387 ORTHO05D005400 3.5e-08 62.8 74 44.6
Sopen10g031260 Solanum pennellii HOM05D003387 ORTHO05D005400 3.5e-08 62.8 74 44.6
TWI34G1705 Tripterygium wilfordii HOM05D003387 ORTHO05D005400 3.5e-08 62.8 116 33.6
Aa31LG6G9950 Aethionema arabicum HOM05D003387 ORTHO05D005400 4.6e-08 62.4 74 43.2
AL1G51590 Arabidopsis lyrata HOM05D003387 ORTHO05D005400 4.6e-08 62.4 74 43.2
AT1G43190 Arabidopsis thaliana HOM05D003387 ORTHO05D005400 4.6e-08 62.4 74 43.2
Carub.0001s3449 Capsella rubella HOM05D003387 ORTHO05D005400 4.6e-08 62.4 74 43.2
CiPaw.04G088200 Carya illinoinensis HOM05D003387 ORTHO05D005400 4.6e-08 62.4 74 43.2
Lj7C377G3 Lonicera japonica HOM05D003387 ORTHO05D005400 4.6e-08 62.4 74 43.2
Sc18g0004540 Simmondsia chinensis HOM05D012448 ORTHO05D011165 4.6e-08 62.4 146 30.1
THA.LOC104809206 Tarenaya hassleriana HOM05D003387 ORTHO05D005400 4.6e-08 62.4 74 45.9
TAR376G0277 Trochodendron aralioides HOM05D003387 ORTHO05D005400 4.6e-08 62.4 74 45.9
GSVIVG01034558001 Vitis vinifera HOM05D003387 ORTHO05D005400 4.6e-08 62.4 74 44.6
BcaB04g17624 Brassica carinata HOM05D003387 ORTHO05D005400 6.1e-08 62.0 74 43.2
Ciclev10001148m.g Citrus clementina HOM05D003387 ORTHO05D005400 6.1e-08 62.0 74 44.6
Solyc10g080720.2 Solanum lycopersicum HOM05D003387 ORTHO05D005400 6.1e-08 62.0 74 45.9
SGA_v2.0_scaffold274G46519 Striga asiatica HOM05D003387 ORTHO05D005400 6.1e-08 62.0 74 44.6
TWI60G0696 Tripterygium wilfordii HOM05D003387 ORTHO05D005400 6.1e-08 62.0 74 43.2
Zm00001eb289150 Zea mays HOM05D003387 ORTHO05D005400 6.1e-08 62.0 74 41.9
Actinidia10635 Actinidia chinensis HOM05D003387 ORTHO05D005400 7.9e-08 61.6 74 44.6
arahy.Tifrunner.gnm1.ann1.9CFF48 Arachis hypogaea HOM05D003387 ORTHO05D005400 7.9e-08 61.6 74 43.2
arahy.Tifrunner.gnm1.ann1.K61U57 Arachis hypogaea HOM05D003387 ORTHO05D005400 7.9e-08 61.6 74 43.2
CSS0039159 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D005400 7.9e-08 61.6 74 44.6
Duzib093G0739 Durio zibethinus HOM05D003387 ORTHO05D005400 7.9e-08 61.6 74 44.6
Thhalv10004261m.g Eutrema salsugineum HOM05D003387 ORTHO05D005400 7.9e-08 61.6 74 43.2
Gohir.A02G063500 Gossypium hirsutum HOM05D003387 ORTHO05D005400 7.9e-08 61.6 74 44.6
Gohir.D02G069100 Gossypium hirsutum HOM05D003387 ORTHO05D005400 7.9e-08 61.6 74 44.6
Gorai.005G078200 Gossypium raimondii HOM05D003387 ORTHO05D005400 7.9e-08 61.6 74 44.6
PGSC0003DMG400023660 Solanum tuberosum HOM05D003387 ORTHO05D005400 7.9e-08 61.6 74 44.6
vmacro01482 Vaccinium macrocarpon HOM05D003387 ORTHO05D005400 7.9e-08 61.6 74 43.2
BcaC07g37311 Brassica carinata HOM05D003387 ORTHO05D005400 1.0e-07 61.2 74 43.2
A08p06460 Brassica napus HOM05D003387 ORTHO05D005400 1.0e-07 61.2 74 43.2
C08p07450 Brassica napus HOM05D003387 ORTHO05D005400 1.0e-07 61.2 74 43.2
BolC8t47590H Brassica oleracea HOM05D003387 ORTHO05D005400 1.0e-07 61.2 74 43.2
BraA08t32655Z Brassica rapa HOM05D003387 ORTHO05D005400 1.0e-07 61.2 74 43.2
DCAR_014445 Daucus carota HOM05D003387 ORTHO05D005400 1.0e-07 61.2 74 41.9
Eucgr.F02695 Eucalyptus grandis HOM05D003387 ORTHO05D005400 1.0e-07 61.2 74 44.6
Lsat_1_v5_gn_9_41940 Lactuca sativa HOM05D003387 ORTHO05D005400 1.0e-07 61.2 74 43.2
PSO541G1407 Papaver somniferum HOM05D003387 ORTHO05D005400 1.0e-07 61.2 74 41.9
PSO675G7282 Papaver somniferum HOM05D003387 ORTHO05D005400 1.0e-07 61.2 74 41.9
Sp1g32390 Schrenkiella parvula HOM05D003387 ORTHO05D005400 1.0e-07 61.2 74 41.9
Sc12g0007750 Simmondsia chinensis HOM05D015224 ORTHO05D011165 1.0e-07 61.2 77 45.5
Sopen12g010100 Solanum pennellii HOM05D003387 ORTHO05D005400 1.0e-07 61.2 74 41.9
PGSC0003DMG400018824 Solanum tuberosum HOM05D003387 ORTHO05D005400 1.0e-07 61.2 74 41.9
THA.LOC104804671 Tarenaya hassleriana HOM05D003387 ORTHO05D005400 1.3e-07 60.8 74 44.6
Ah.05g168100 Amaranthus hybridus HOM05D003387 ORTHO05D005400 1.8e-07 60.5 74 43.2
CiPaw.15G014400 Carya illinoinensis HOM05D003387 ORTHO05D005400 1.8e-07 60.5 74 43.2
ECA232G0053 Erigeron canadensis HOM05D003387 ORTHO05D005400 1.8e-07 60.5 74 40.5
Migut.K00003 Erythranthe guttata HOM05D003387 ORTHO05D005400 1.8e-07 60.5 74 41.9
Glyma.02G080500 Glycine max HOM05D003387 ORTHO05D005400 1.8e-07 60.5 74 41.9
Glyma.16G165000 Glycine max HOM05D003387 ORTHO05D005400 1.8e-07 60.5 74 41.9
Lj5g0027187 Lotus japonicus HOM05D003387 ORTHO05D005400 1.8e-07 60.5 74 41.9
Lalb_Chr02g0141481 Lupinus albus HOM05D003387 ORTHO05D005400 1.8e-07 60.5 74 40.5
Manes.02G181600 Manihot esculenta HOM05D003387 ORTHO05D005400 1.8e-07 60.5 74 43.2
Os05g0437300 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D005400 1.8e-07 60.5 74 41.9
Phvul.004G092400 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 1.8e-07 60.5 74 41.9
SalBow1G1267 Salvia bowleyana HOM05D003387 ORTHO05D005400 1.8e-07 60.5 74 43.2
Sc11g0003900 Simmondsia chinensis HOM05D015224 ORTHO05D011165 1.8e-07 60.5 80 41.2
VMungo0464G0875 Vigna mungo HOM05D003387 ORTHO05D005400 1.8e-07 60.5 74 41.9
CiPaw.16G009800 Carya illinoinensis HOM05D003387 ORTHO05D005400 2.3e-07 60.1 74 43.2
Psat1g100400 Pisum sativum HOM05D003387 ORTHO05D005400 2.3e-07 60.1 74 40.5
QL02p037738 Quercus lobata HOM05D003387 ORTHO05D005400 2.3e-07 60.1 74 43.2
QL02p038708 Quercus lobata HOM05D003387 ORTHO05D005400 2.3e-07 60.1 74 43.2
Sc03g0006450 Simmondsia chinensis HOM05D008654 ORTHO05D011165 2.3e-07 60.1 64 45.3
Ca_04511_v3 Cicer arietinum L. HOM05D003387 ORTHO05D005400 3.0e-07 59.7 74 41.9
Pp3c14_14100 Physcomitrium patens HOM05D003387 ORTHO05D005400 3.0e-07 59.7 74 43.2
Potri.002G066000 Populus trichocarpa HOM05D003387 ORTHO05D005400 3.0e-07 59.7 74 43.2
Sed0017554 Sechium edule HOM05D003387 ORTHO05D005400 3.0e-07 59.7 74 43.2
Sc26g0003240 Simmondsia chinensis HOM05D012448 ORTHO05D011165 3.0e-07 59.7 91 35.2
ATR1126G056 Amborella trichopoda HOM05D003387 ORTHO05D005400 3.9e-07 59.3 74 40.5
arahy.Tifrunner.gnm1.ann1.LGJ4PH Arachis hypogaea HOM05D003387 ORTHO05D005400 3.9e-07 59.3 74 43.2
arahy.Tifrunner.gnm1.ann1.RF14FM Arachis hypogaea HOM05D003387 ORTHO05D005400 3.9e-07 59.3 74 43.2
Cfa018305 Carpinus fangiana HOM05D003387 ORTHO05D005400 3.9e-07 59.3 74 43.2
ClCG08G002590 Citrullus lanatus HOM05D003387 ORTHO05D005400 3.9e-07 59.3 74 43.2
MELO3C024993.2 Cucumis melo HOM05D003387 ORTHO05D005400 3.9e-07 59.3 74 43.2
CsaV3_6G002770 Cucumis sativus L. HOM05D003387 ORTHO05D005400 3.9e-07 59.3 74 43.2
Glyma.10G223300 Glycine max HOM05D003387 ORTHO05D005400 3.9e-07 59.3 74 40.5
Glyma.20G168400 Glycine max HOM05D003387 ORTHO05D005400 3.9e-07 59.3 74 40.5
Lalb_Chr06g0161681 Lupinus albus HOM05D003387 ORTHO05D005400 3.9e-07 59.3 74 39.2
Lalb_Chr21g0305541 Lupinus albus HOM05D003387 ORTHO05D005400 3.9e-07 59.3 74 39.2
PGR042G1308 Punica granatum HOM05D003387 ORTHO05D005400 3.9e-07 59.3 74 41.9
HPP92_002768 Vanilla planifolia HOM05D003387 ORTHO05D005400 3.9e-07 59.3 74 43.2
Atru.chr13.2064 Acer truncatum HOM05D003387 ORTHO05D005400 5.1e-07 58.9 74 41.9
CBR_g7995 Chara braunii HOM05D003387 ORTHO05D005400 5.1e-07 58.9 74 43.2
Mapoly0001s0481 Marchantia polymorpha HOM05D003387 ORTHO05D005400 5.1e-07 58.9 74 41.9
Peaxi162Scf00076g00821 Petunia axillaris HOM05D003387 ORTHO05D005400 5.1e-07 58.9 74 40.5
Pp3c14_17110 Physcomitrium patens HOM05D003387 ORTHO05D005400 5.1e-07 58.9 74 43.2
Psat6g192160 Pisum sativum HOM05D003387 ORTHO05D005400 5.1e-07 58.9 74 41.9
Prupe.8G036700 Prunus persica HOM05D003387 ORTHO05D005400 5.1e-07 58.9 74 41.9
VMungo0720G1662 Vigna mungo HOM05D003387 ORTHO05D005400 5.1e-07 58.9 74 41.9
Ca_10675_v3 Cicer arietinum L. HOM05D003387 ORTHO05D005400 6.7e-07 58.5 74 41.9
Duzib116G0668 Durio zibethinus HOM05D003387 ORTHO05D005400 6.7e-07 58.5 74 43.2
FvH4_2g13280 Fragaria vesca HOM05D003387 ORTHO05D005400 6.7e-07 58.5 74 40.5
FAN20G0358 Fragaria x ananassa HOM05D003387 ORTHO05D005400 6.7e-07 58.5 74 40.5
FAN24G3173 Fragaria x ananassa HOM05D003387 ORTHO05D005400 6.7e-07 58.5 74 40.5
MD04G1044700 Malus domestica HOM05D003387 ORTHO05D005400 6.7e-07 58.5 74 40.5
Potri.005G194700 Populus trichocarpa HOM05D003387 ORTHO05D005400 6.7e-07 58.5 74 41.9
RcHm_v2.0_Chr6g0274691 Rosa chinensis HOM05D003387 ORTHO05D005400 6.7e-07 58.5 74 40.5
TPR.G17034 Trifolium pratense HOM05D003387 ORTHO05D005400 6.7e-07 58.5 74 41.9
CANSAT25G0465 Cannabis sativa HOM05D003387 ORTHO05D005400 8.7e-07 58.2 74 41.9
Phvul.007G081900 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 8.7e-07 58.2 74 40.5
Medtr1g098530 Medicago truncatula HOM05D003387 ORTHO05D005400 1.1e-06 57.8 74 40.5
Medtr6g043520 Medicago truncatula HOM05D003387 ORTHO05D005400 1.1e-06 57.8 74 39.2
ATR0115G003 Amborella trichopoda HOM05D003387 ORTHO05D005400 1.5e-06 57.4 74 41.9
AagrBONN_evm.TU.Sc2ySwM_368.3328 Anthoceros agrestis HOM05D003387 ORTHO05D005400 1.5e-06 57.4 74 41.9
Lalb_Chr19g0130201 Lupinus albus HOM05D003387 ORTHO05D005400 1.5e-06 57.4 74 39.2
FAN15G3239 Fragaria x ananassa HOM05D003387 ORTHO05D005400 1.9e-06 57.0 74 39.2
Lj8C37T13 Lonicera japonica HOM05D003387 ORTHO05D235663 1.9e-06 57.0 76 43.4
Sed0013690 Sechium edule HOM05D003387 ORTHO05D005400 2.5e-06 56.6 74 41.9
Sabra05G0148200 Salix brachista HOM05D003387 ORTHO05D005400 3.3e-06 56.2 74 41.9
TPR.G28008 Trifolium pratense HOM05D003387 ORTHO05D005400 4.3e-06 55.8 74 37.8
Hund26682 Selenicereus undatus HOM05D003387 ORTHO05D005400 5.7e-06 55.5 74 40.5
SMO146G0032 Selaginella moellendorffii HOM05D003387 ORTHO05D005400 7.4e-06 55.1 74 40.5
Lj2g0008478 Lotus japonicus HOM05D003387 ORTHO05D005400 9.7e-06 54.7 74 39.2
PSO170G1597 Papaver somniferum HOM05D003387 ORTHO05D005400 9.7e-06 54.7 96 33.3


User provided reference genes

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