Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0005690 Simmondsia chinensis HOM05D006776 ORTHO05D007603 8.3e-282 973.0 481 100.0
EL10Ac1g02384 Beta vulgaris HOM05D006776 ORTHO05D007603 2.3e-191 672.5 410 79.8
Dinv39223 Davidia involucrata HOM05D006776 ORTHO05D007603 7.0e-188 661.0 411 77.9
GSVIVG01009344001 Vitis vinifera HOM05D006776 ORTHO05D007603 7.8e-187 657.5 411 77.1
Hund23872 Selenicereus undatus HOM05D006776 ORTHO05D007603 1.7e-186 656.4 409 79.0
Haze_22436 Corylus avellana HOM05D006776 ORTHO05D007603 1.6e-184 649.8 411 78.1
CSS0038791 Camellia sinensis var. sinensis HOM05D006776 ORTHO05D007603 6.1e-184 647.9 411 76.9
Manes.05G181900 Manihot esculenta HOM05D006776 ORTHO05D007603 1.0e-183 647.1 411 77.4
Actinidia08248 Actinidia chinensis HOM05D006776 ORTHO05D007603 3.4e-182 642.1 411 76.4
CiPaw.07G175000 Carya illinoinensis HOM05D006776 ORTHO05D007603 2.9e-181 639.0 409 77.3
RcHm_v2.0_Chr6g0309581 Rosa chinensis HOM05D006776 ORTHO05D007603 9.2e-180 634.0 411 76.2
Atru.chr13.832 Acer truncatum HOM05D006776 ORTHO05D007603 1.6e-179 633.3 385 79.5
Ah.11g042830 Amaranthus hybridus HOM05D006776 ORTHO05D007603 6.0e-179 631.3 410 75.1
FvH4_2g33100 Fragaria vesca HOM05D006776 ORTHO05D007603 7.8e-179 630.9 411 74.7
FAN15G0723 Fragaria x ananassa HOM05D006776 ORTHO05D007603 1.0e-178 630.6 411 74.5
Thecc.08G088800 Theobroma cacao HOM05D006776 ORTHO05D007603 1.7e-178 629.8 411 76.6
FAN24G3456 Fragaria x ananassa HOM05D006776 ORTHO05D007603 1.1e-177 627.1 411 74.0
TAR376G1186 Trochodendron aralioides HOM05D006776 ORTHO05D007603 1.1e-177 627.1 442 70.8
Rhsim07G0219900 Rhododendron simsii HOM05D006776 ORTHO05D007603 1.5e-177 626.7 411 74.9
FAN20G0940 Fragaria x ananassa HOM05D006776 ORTHO05D007603 3.3e-177 625.5 411 74.2
FAN27G1522 Fragaria x ananassa HOM05D006776 ORTHO05D007603 4.3e-177 625.2 411 74.5
Prupe.1G422900 Prunus persica HOM05D006776 ORTHO05D007603 7.3e-177 624.4 411 74.7
CANSAT21G2159 Cannabis sativa HOM05D006776 ORTHO05D007603 9.5e-177 624.0 410 75.9
MD15G1070100 Malus domestica HOM05D006776 ORTHO05D007603 2.1e-176 622.9 411 74.0
Gohir.D05G213300 Gossypium hirsutum HOM05D006776 ORTHO05D007603 4.7e-176 621.7 411 75.4
AUR62038776 Chenopodium quinoa HOM05D006776 ORTHO05D007603 1.4e-175 620.2 408 76.5
Gohir.A05G210000 Gossypium hirsutum HOM05D006776 ORTHO05D007603 3.1e-175 619.0 411 74.9
Cpa.g.sc142.25 Carica papaya HOM05D006776 ORTHO05D007603 4.0e-175 618.6 386 77.2
COL.COLO4_28506 Corchorus olitorius HOM05D006776 ORTHO05D007603 6.8e-175 617.8 411 74.2
Cfa013778 Carpinus fangiana HOM05D006776 ORTHO05D007603 1.5e-174 616.7 411 74.9
PGR083G0271 Punica granatum HOM05D006776 ORTHO05D007603 3.4e-174 615.5 411 74.9
Aqoxy5G00870 Aquilegia oxysepala HOM05D006776 ORTHO05D007603 4.4e-174 615.1 410 73.9
Nn1g04555 Nelumbo nucifera HOM05D006776 ORTHO05D007603 1.7e-173 613.2 411 73.5
QL12p038088 Quercus lobata HOM05D006776 ORTHO05D007603 2.2e-173 612.8 446 70.0
Ciclev10001152m.g Citrus clementina HOM05D006776 ORTHO05D007603 2.9e-173 612.5 411 73.7
Cc10_g05780 Coffea canephora HOM05D006776 ORTHO05D007603 4.9e-173 611.7 411 74.0
ECA232G1156 Erigeron canadensis HOM05D006776 ORTHO05D007603 2.4e-172 609.4 409 72.1
arahy.Tifrunner.gnm1.ann1.YEFH3D Arachis hypogaea HOM05D006776 ORTHO05D007603 1.2e-171 607.1 411 71.3
MSTRG.22221 Avicennia marina HOM05D006776 ORTHO05D007603 1.2e-171 607.1 409 72.4
Hma1.2p1_0819F.1_g223710 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 2.1e-171 606.3 384 75.8
arahy.Tifrunner.gnm1.ann1.SBJ000 Arachis hypogaea HOM05D006776 ORTHO05D007603 3.5e-171 605.5 396 73.2
SGA_v2.0_scaffold152G36804 Striga asiatica HOM05D006776 ORTHO05D007603 1.3e-170 603.6 411 72.5
PGSC0003DMG400011544 Solanum tuberosum HOM05D006776 ORTHO05D007603 1.7e-170 603.2 409 71.6
Nitab4.5_0002314g0100 Nicotiana tabacum HOM05D006776 ORTHO05D007603 3.9e-170 602.1 411 72.3
Potri.014G016100 Populus trichocarpa HOM05D006776 ORTHO05D007603 5.1e-170 601.7 414 73.4
Nitab4.5_0008551g0030 Nicotiana tabacum HOM05D006776 ORTHO05D007603 1.9e-169 599.7 386 75.4
CsaV3_2G026140 Cucumis sativus L. HOM05D006776 ORTHO05D007603 9.5e-169 597.4 411 72.7
Oeu053611.1 Olea europaea HOM05D006776 ORTHO05D007603 4.7e-168 595.1 411 71.5
Eucgr.F00083 Eucalyptus grandis HOM05D006776 ORTHO05D007603 6.2e-168 594.7 410 72.9
Lj4A758G74 Lonicera japonica HOM05D006776 ORTHO05D007603 1.1e-167 594.0 364 77.5
Peaxi162Scf00160g00527 Petunia axillaris HOM05D006776 ORTHO05D007603 1.8e-167 593.2 409 71.4
HanXRQChr09g0266761 Helianthus annuus HOM05D006776 ORTHO05D007603 4.0e-167 592.0 409 69.7
Solyc12g088340.2 Solanum lycopersicum HOM05D006776 ORTHO05D007603 4.0e-167 592.0 409 70.2
Lalb_Chr11g0062871 Lupinus albus HOM05D006776 ORTHO05D007603 5.2e-167 591.7 410 70.5
Sopen12g030330 Solanum pennellii HOM05D006776 ORTHO05D007603 1.2e-166 590.5 409 69.9
Migut.N02781 Erythranthe guttata HOM05D006776 ORTHO05D007603 2.6e-166 589.3 411 71.0
Lsat_1_v5_gn_4_131640 Lactuca sativa HOM05D006776 ORTHO05D007603 3.4e-166 589.0 411 71.3
Phvul.009G071700 Phaseolus vulgaris HOM05D006776 ORTHO05D007603 5.8e-166 588.2 393 72.5
Sed0026542 Sechium edule HOM05D006776 ORTHO05D007603 5.8e-166 588.2 397 72.5
Glyma.06G046400 Glycine max HOM05D006776 ORTHO05D007603 1.7e-165 586.6 409 70.4
Glyma.04G045700 Glycine max HOM05D006776 ORTHO05D007603 1.4e-164 583.6 413 70.0
MELO3C010806.2 Cucumis melo HOM05D006776 ORTHO05D007603 1.9e-164 583.2 417 70.7
Ca_15900_v3 Cicer arietinum L. HOM05D006776 ORTHO05D007603 4.1e-164 582.0 409 70.2
VMungo1309G0963 Vigna mungo HOM05D006776 ORTHO05D007603 5.4e-164 581.6 409 70.2
Gorai.009G219900 Gossypium raimondii HOM05D006776 ORTHO05D007603 9.2e-164 580.9 362 78.5
Lj1g0026753 Lotus japonicus HOM05D006776 ORTHO05D007603 1.2e-163 580.5 409 69.9
Medtr3g103170 Medicago truncatula HOM05D006776 ORTHO05D007603 2.1e-163 579.7 409 70.4
TWI56G0429 Tripterygium wilfordii HOM05D006776 ORTHO05D007603 2.7e-163 579.3 409 70.9
DCAR_012816 Daucus carota HOM05D006776 ORTHO05D007603 7.8e-163 577.8 410 69.5
ClCG08G016470 Citrullus lanatus HOM05D006776 ORTHO05D007603 1.3e-162 577.0 400 71.5
Sabra14G0010000 Salix brachista HOM05D006776 ORTHO05D007603 1.7e-162 576.6 414 71.0
TPR.G33723 Trifolium pratense HOM05D006776 ORTHO05D007603 3.9e-162 575.5 409 69.7
PSO170G0170 Papaver somniferum HOM05D006776 ORTHO05D007603 5.1e-162 575.1 410 67.8
PSO017G0681 Papaver somniferum HOM05D006776 ORTHO05D007603 8.6e-162 574.3 410 67.8
Psat5g038960 Pisum sativum HOM05D006776 ORTHO05D007603 5.6e-161 571.6 412 69.7
THA.LOC104814190 Tarenaya hassleriana HOM05D006776 ORTHO05D007603 5.6e-161 571.6 417 68.1
ATR0820G216 Amborella trichopoda HOM05D006776 ORTHO05D007603 6.4e-157 558.1 409 65.8
CDE04G2973 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 2.1e-155 553.1 443 63.4
HPP92_001976 Vanilla planifolia HOM05D006776 ORTHO05D007603 7.8e-155 551.2 410 66.3
Sp1g24040 Schrenkiella parvula HOM05D006776 ORTHO05D007603 3.0e-154 549.3 410 67.1
AT1G27840 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 1.3e-152 543.9 410 66.1
CARHR027300 Cardamine hirsuta HOM05D006776 ORTHO05D007603 1.5e-150 537.0 410 66.3
AL1G41330 Arabidopsis lyrata HOM05D006776 ORTHO05D007603 3.4e-150 535.8 410 64.6
A09p38320 Brassica napus HOM05D006776 ORTHO05D007603 4.4e-150 535.4 409 64.1
unitig_578.g16149 Utricularia gibba HOM05D006776 ORTHO05D007603 5.8e-150 535.0 409 64.3
C05p26470 Brassica napus HOM05D006776 ORTHO05D007603 9.9e-150 534.3 409 63.8
BcaNung06155 Brassica carinata HOM05D006776 ORTHO05D007603 1.7e-149 533.5 410 64.1
BolC5t31368H Brassica oleracea HOM05D006776 ORTHO05D007603 3.8e-149 532.3 410 64.6
Aa31sc113G60 Aethionema arabicum HOM05D006776 ORTHO05D007603 6.4e-149 531.6 437 62.9
vmacro22055 Vaccinium macrocarpon HOM05D006776 ORTHO05D007603 6.4e-149 531.6 377 70.6
BraA09t39342Z Brassica rapa HOM05D006776 ORTHO05D007603 1.1e-148 530.8 411 63.7
Zm00001eb147340 Zea mays HOM05D006776 ORTHO05D007603 7.1e-148 528.1 410 63.7
Hma1.2p1_0819F.1_g223700 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 4.6e-147 525.4 332 76.8
Duzib116G0586 Durio zibethinus HOM05D006776 ORTHO05D007603 1.5e-145 520.4 332 78.0
Thhalv10007615m.g Eutrema salsugineum HOM05D006776 ORTHO05D007603 3.4e-142 509.2 360 68.3
BcaNung06153 Brassica carinata HOM05D006776 ORTHO05D007603 1.1e-140 504.2 409 61.4
MD08G1082700 Malus domestica HOM05D006776 ORTHO05D007603 4.0e-135 485.7 375 66.4
AUR62037473 Chenopodium quinoa HOM05D006776 ORTHO05D007603 6.7e-130 468.4 303 75.9
Mapoly0043s0035 Marchantia polymorpha HOM05D006776 ORTHO05D007603 7.7e-118 428.3 412 52.4
Pp3c22_5850 Physcomitrium patens HOM05D006776 ORTHO05D007603 1.7e-117 427.2 443 49.7
AT1G19750 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 2.5e-116 423.3 346 61.3
AagrBONN_evm.TU.Sc2ySwM_228.2971 Anthoceros agrestis HOM05D006776 ORTHO05D007603 8.2e-112 408.3 408 51.2
SMO203G0215 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 1.5e-110 404.1 442 46.8
Carub.0001s2630 Capsella rubella HOM05D006776 ORTHO05D007603 5.7e-105 385.6 320 62.2
CDE02G3909 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 1.7e-104 384.0 391 52.4
BcaC05g26777 Brassica carinata HOM05D006776 ORTHO05D007603 5.5e-100 369.0 414 50.7
CBR_g4873 Chara braunii HOM05D006776 ORTHO05D007603 1.8e-90 337.4 483 39.3
SMO353G0131 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 1.3e-80 304.7 449 40.1
MD08G1084000 Malus domestica HOM05D006776 ORTHO05D007603 1.6e-78 297.7 244 64.3
SEGI_36074 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 2.4e-71 273.9 225 60.4
MCO02G266 Micromonas commoda HOM05D006776 ORTHO05D007603 1.2e-62 245.0 402 36.3
SEGI_38356 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 9.8e-57 225.3 154 66.9
Os02g0307200 Oryza sativa ssp. japonica HOM05D006776 ORTHO05D007603 6.6e-53 212.6 134 71.6
PRCOL_00002749 Prasinoderma coloniale HOM05D006776 ORTHO05D007603 2.9e-40 170.6 399 31.8
Cre01.g032100 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 4.6e-38 163.3 285 34.0
Lsat_1_v5_gn_7_88960 Lactuca sativa HOM05D006776 ORTHO05D007603 1.7e-37 161.4 103 70.9
Cre01.g032139 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 1.3e-16 92.0 96 43.8
HanXRQChr04g0100971 Helianthus annuus HOM05D000464 ORTHO05D006292 1.8e-10 71.6 389 21.6
Cc04_g10820 Coffea canephora HOM05D000464 ORTHO05D006292 5.9e-09 66.6 338 24.3
HPP92_025390 Vanilla planifolia HOM05D006183 ORTHO05D007844 1.1e-07 62.4 355 22.8
Os10g0464100 Oryza sativa ssp. japonica HOM05D006183 ORTHO05D007844 1.2e-06 58.9 339 22.4
DCAR_013994 Daucus carota HOM05D000347 ORTHO05D001997 1.6e-06 58.5 176 23.9
Migut.D00486 Erythranthe guttata HOM05D006183 ORTHO05D007844 1.6e-06 58.5 252 23.0
Lsat_1_v5_gn_7_78061 Lactuca sativa HOM05D000347 ORTHO05D001997 1.6e-06 58.5 132 28.0
MELO3C026239.2 Cucumis melo HOM05D000464 ORTHO05D006292 2.1e-06 58.2 130 26.2
CsaV3_1G000870 Cucumis sativus L. HOM05D000464 ORTHO05D006292 2.1e-06 58.2 130 26.2
AL8G24250 Arabidopsis lyrata HOM05D000464 ORTHO05D006292 2.7e-06 57.8 117 24.8
AT5G50230 Arabidopsis thaliana HOM05D000464 ORTHO05D006292 2.7e-06 57.8 117 24.8
DCAR_007090 Daucus carota HOM05D002303 ORTHO05D006504 2.7e-06 57.8 164 25.6
Migut.D02035 Erythranthe guttata HOM05D000464 ORTHO05D006292 3.5e-06 57.4 324 21.3
Lj3A1052T30 Lonicera japonica HOM05D002303 ORTHO05D006504 3.5e-06 57.4 164 25.6
Manes.04G075900 Manihot esculenta HOM05D000347 ORTHO05D001997 3.5e-06 57.4 129 26.4
Lj1A75T44 Lonicera japonica HOM05D006183 ORTHO05D007844 4.6e-06 57.0 179 25.7
Sc25g0005650 Simmondsia chinensis HOM05D000997 ORTHO05D000828 4.6e-06 57.0 103 35.9
Medtr3g075400 Medicago truncatula HOM05D000464 ORTHO05D006292 6.1e-06 56.6 118 25.4
Potri.008G172800 Populus trichocarpa HOM05D002303 ORTHO05D006504 6.1e-06 56.6 164 25.6


User provided reference genes

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