Gene: Sopen12g030330

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen12g030330
  • Transcript Identifier Sopen12g030330.1
  • Gene Type Coding gene
  • Location Spenn-ch12 : 79587696-79594049 : positive

Gene Family Information

  • ID HOM05D006776
  • #Genes/#Species 119/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen12g030330.1

Descriptions

  • Description Encodes a DDB1a interacting protein ATCSA-1 required for UV-B tolerance and genomic integrity. | ATCSA-1 | CONTAINS InterPro DOMAIN/s: WD40 repeat 2 , WD40 repeat, conserved site , WD40 repeat , G-protein beta WD-40 repeat, region , WD40 repeat-like-containing domain , WD40-repeat-containing domain , WD40/YVTN repeat-like-containing domain , WD40 repeat, subgroup | BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006283
IEA
InterProtranscription-coupled nucleotide-excision repair
GO:0006281
ISO
PLAZA Integrative OrthologyDNA repair AT1G27840
GO:0010224
ISO
PLAZA Integrative Orthologyresponse to UV-B AT1G27840

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G27840

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR042238 DNA excision repair protein Rad28/ERCC8/Ckn1/ATCSA-1
IPR001680 WD40 repeat
IPR036322 WD40-repeat-containing domain superfamily
IPR020472 G-protein beta WD-40 repeat
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
Mapman id Description
14.6.2.1 DNA damage response.nucleotide excision repair (NER).transcription-coupled nucleotide excision repair (TC-NER).DNA repair protein (CSA)