Gene: Solyc12g088340.2

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc12g088340.2
  • Transcript Identifier Solyc12g088340.2.1
  • Gene Type Coding gene
  • Location SL4.0ch12 : 63330498-63336413 : positive

Gene Family Information

  • ID HOM05D006776
  • #Genes/#Species 119/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc12g088340.2.1
  • uniprot A0A3Q7JCK3
  • gene_id Solyc12g088340

Descriptions

  • Description Transducin/WD40 repeat-like superfamily protein (AHRD V3.3 *** A0A2U1Q4X4_ARTAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006283
IBA
IEA
GOA Databasetranscription-coupled nucleotide-excision repair
GO:0006283
IEA
InterProtranscription-coupled nucleotide-excision repair
GO:0000209
IBA
GOA Databaseprotein polyubiquitination
GO:0045739
IBA
GOA Databasepositive regulation of DNA repair
GO:0043161
IBA
GOA Databaseproteasome-mediated ubiquitin-dependent protein catabolic process
GO:0006281
ISO
PLAZA Integrative OrthologyDNA repair AT1G27840
GO:0010224
ISO
PLAZA Integrative Orthologyresponse to UV-B AT1G27840

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0004842
IBA
GOA Databaseubiquitin-protein transferase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000109
IBA
GOA Databasenucleotide-excision repair complex
GO:0031464
IBA
GOA DatabaseCul4A-RING E3 ubiquitin ligase complex
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G27840

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001680 WD40 repeat
IPR042238 DNA excision repair protein Rad28/ERCC8/Ckn1/ATCSA-1
IPR036322 WD40-repeat-containing domain superfamily
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR020472 G-protein beta WD-40 repeat
Mapman id Description
14.6.2.1 DNA damage response.nucleotide excision repair (NER).transcription-coupled nucleotide excision repair (TC-NER).DNA repair protein (CSA)