Gene: Pp3c22_5850

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c22_5850
  • Transcript Identifier Pp3c22_5850V3.1
  • Gene Type Coding gene
  • Location Chr22 : 3370822-3373843 : negative

Gene Family Information

  • ID HOM05D006776
  • #Genes/#Species 119/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c22_5850V3.1
  • pacid 32905267
  • alias Phpat.022G021800
  • alias Pp1s12_367V6
  • alias Phypa_114956
  • uniprot A0A2K1IME5

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006283
IBA
IEA
GOA Databasetranscription-coupled nucleotide-excision repair
GO:0006283
IEA
InterProtranscription-coupled nucleotide-excision repair
GO:0043161
IBA
GOA Databaseproteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045739
IBA
GOA Databasepositive regulation of DNA repair
GO:0000209
IBA
GOA Databaseprotein polyubiquitination
GO:0006281
ISO
PLAZA Integrative OrthologyDNA repair AT1G27840
GO:0010224
ISO
PLAZA Integrative Orthologyresponse to UV-B AT1G27840

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0004842
IBA
GOA Databaseubiquitin-protein transferase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031464
IBA
GOA DatabaseCul4A-RING E3 ubiquitin ligase complex
GO:0000109
IBA
GOA Databasenucleotide-excision repair complex
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G27840

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR042238 DNA excision repair protein Rad28/ERCC8/Ckn1/ATCSA-1
IPR001680 WD40 repeat
IPR036322 WD40-repeat-containing domain superfamily
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR020472 G-protein beta WD-40 repeat
Mapman id Description
14.6.2.1 DNA damage response.nucleotide excision repair (NER).transcription-coupled nucleotide excision repair (TC-NER).DNA repair protein (CSA)