Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0003120 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.5e-71 272.7 138 100.0
Sc16g0004730 Simmondsia chinensis HOM05D003387 ORTHO05D011165 5.2e-27 124.8 132 56.1
Sc07g0005580 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.5e-26 123.2 95 64.2
Sc07g0005590 Simmondsia chinensis HOM05D003387 ORTHO05D011165 2.6e-26 122.5 95 64.2
Sc12g0007970 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.7e-22 109.8 90 63.3
Sc21g0004200 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.0e-19 100.5 100 55.0
Sc04g0006840 Simmondsia chinensis HOM05D003387 ORTHO05D011165 6.8e-19 97.8 88 53.4
Sc16g0004600 Simmondsia chinensis HOM05D008654 ORTHO05D011165 6.8e-19 97.8 114 46.5
Sc25g0003800 Simmondsia chinensis HOM05D003387 ORTHO05D011165 4.4e-18 95.1 119 42.9
Sc26g0003450 Simmondsia chinensis HOM05D031019 ORTHO05D011165 9.8e-18 94.0 92 51.1
Sc13g0008890 Simmondsia chinensis HOM05D031019 ORTHO05D011165 1.7e-17 93.2 114 45.6
Sc22g0004350 Simmondsia chinensis HOM05D028099 ORTHO05D011165 2.2e-17 92.8 82 54.9
Sc04g0003810 Simmondsia chinensis HOM05D012448 ORTHO05D011165 4.9e-17 91.7 104 48.1
Sc09g0007220 Simmondsia chinensis HOM05D003387 ORTHO05D011165 6.4e-17 91.3 117 47.0
Sc20g0003080 Simmondsia chinensis HOM05D012448 ORTHO05D011165 3.2e-16 89.0 94 43.6
Sc07g0004700 Simmondsia chinensis HOM05D012448 ORTHO05D011165 4.1e-16 88.6 103 45.6
Sc18g0004320 Simmondsia chinensis HOM05D031019 ORTHO05D011165 1.2e-15 87.0 76 55.3
Sc17g0002610 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.6e-15 86.7 93 47.3
Sc02g0004440 Simmondsia chinensis HOM05D003387 ORTHO05D011165 2.7e-15 85.9 84 50.0
Sc08g0005810 Simmondsia chinensis HOM05D012448 ORTHO05D011165 4.6e-15 85.1 111 39.6
Sc03g0005120 Simmondsia chinensis HOM05D015224 ORTHO05D011165 2.3e-14 82.8 99 44.4
Sc03g0007670 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.9e-13 79.7 88 47.7
Sc01g0004380 Simmondsia chinensis HOM05D031019 ORTHO05D011165 2.5e-13 79.3 76 53.9
Sc07g0005070 Simmondsia chinensis HOM05D003387 ORTHO05D011165 3.3e-13 79.0 83 47.0
Sc11g0004550 Simmondsia chinensis HOM05D012448 ORTHO05D011165 3.3e-13 79.0 102 44.1
Sc14g0005430 Simmondsia chinensis HOM05D012448 ORTHO05D011165 5.6e-13 78.2 116 38.8
Sc12g0007940 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.2e-12 77.0 125 38.4
PSO700G0143 Papaver somniferum HOM05D003387 ORTHO05D005400 2.1e-12 76.3 91 49.5
Sc09g0006480 Simmondsia chinensis HOM05D012448 ORTHO05D011165 2.1e-12 76.3 113 44.2
Sc22g0003270 Simmondsia chinensis HOM05D012448 ORTHO05D011165 2.1e-12 76.3 101 44.6
GSVIVG01034558001 Vitis vinifera HOM05D003387 ORTHO05D005400 2.1e-12 76.3 87 49.4
Ca_10675_v3 Cicer arietinum L. HOM05D003387 ORTHO05D005400 2.8e-12 75.9 75 54.7
Eucgr.F02695 Eucalyptus grandis HOM05D003387 ORTHO05D005400 3.6e-12 75.5 87 50.6
Nn1g06041 Nelumbo nucifera HOM05D003387 ORTHO05D005400 3.6e-12 75.5 75 54.7
Sed0017554 Sechium edule HOM05D003387 ORTHO05D005400 3.6e-12 75.5 87 49.4
arahy.Tifrunner.gnm1.ann1.9CFF48 Arachis hypogaea HOM05D003387 ORTHO05D005400 4.7e-12 75.1 75 53.3
arahy.Tifrunner.gnm1.ann1.K61U57 Arachis hypogaea HOM05D003387 ORTHO05D005400 4.7e-12 75.1 75 53.3
CANSAT25G0465 Cannabis sativa HOM05D003387 ORTHO05D005400 4.7e-12 75.1 87 49.4
Prupe.8G036700 Prunus persica HOM05D003387 ORTHO05D005400 4.7e-12 75.1 87 49.4
SalBow1G1267 Salvia bowleyana HOM05D003387 ORTHO05D005400 4.7e-12 75.1 84 50.0
FvH4_2g13280 Fragaria vesca HOM05D003387 ORTHO05D005400 6.2e-12 74.7 87 48.3
FAN20G0358 Fragaria x ananassa HOM05D003387 ORTHO05D005400 6.2e-12 74.7 87 48.3
FAN24G3173 Fragaria x ananassa HOM05D003387 ORTHO05D005400 6.2e-12 74.7 87 48.3
MD04G1044700 Malus domestica HOM05D003387 ORTHO05D005400 6.2e-12 74.7 87 48.3
RcHm_v2.0_Chr6g0274691 Rosa chinensis HOM05D003387 ORTHO05D005400 6.2e-12 74.7 87 48.3
AagrBONN_evm.TU.Sc2ySwM_368.3328 Anthoceros agrestis HOM05D003387 ORTHO05D005400 8.1e-12 74.3 87 47.1
Duzib093G0739 Durio zibethinus HOM05D003387 ORTHO05D005400 8.1e-12 74.3 87 48.3
Gohir.A02G063500 Gossypium hirsutum HOM05D003387 ORTHO05D005400 8.1e-12 74.3 87 48.3
Gohir.D02G069100 Gossypium hirsutum HOM05D003387 ORTHO05D005400 8.1e-12 74.3 87 48.3
Gorai.005G078200 Gossypium raimondii HOM05D003387 ORTHO05D005400 8.1e-12 74.3 87 48.3
Nn5g28791 Nelumbo nucifera HOM05D003387 ORTHO05D005400 8.1e-12 74.3 75 53.3
Sabra02G0052700 Salix brachista HOM05D003387 ORTHO05D005400 8.1e-12 74.3 75 53.3
TWI34G1705 Tripterygium wilfordii HOM05D003387 ORTHO05D005400 8.1e-12 74.3 87 47.1
TAR628G0869 Trochodendron aralioides HOM05D003387 ORTHO05D005400 8.1e-12 74.3 75 53.3
ECA232G0053 Erigeron canadensis HOM05D003387 ORTHO05D005400 1.1e-11 73.9 75 52.0
Ah.05g168100 Amaranthus hybridus HOM05D003387 ORTHO05D005400 1.4e-11 73.6 75 52.0
Glyma.02G080500 Glycine max HOM05D003387 ORTHO05D005400 1.4e-11 73.6 75 50.7
Glyma.16G165000 Glycine max HOM05D003387 ORTHO05D005400 1.4e-11 73.6 75 50.7
Lalb_Chr02g0141481 Lupinus albus HOM05D003387 ORTHO05D005400 1.4e-11 73.6 84 46.4
Phvul.004G092400 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 1.4e-11 73.6 75 50.7
Potri.002G066000 Populus trichocarpa HOM05D003387 ORTHO05D005400 1.4e-11 73.6 75 53.3
Sc09g0006000 Simmondsia chinensis HOM05D015224 ORTHO05D388293 1.4e-11 73.6 133 35.3
Sc18g0004540 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.4e-11 73.6 87 42.5
TAR376G0277 Trochodendron aralioides HOM05D003387 ORTHO05D005400 1.4e-11 73.6 75 53.3
Dinv25885 Davidia involucrata HOM05D003387 ORTHO05D005400 1.8e-11 73.2 87 48.3
FAN15G3239 Fragaria x ananassa HOM05D003387 ORTHO05D005400 1.8e-11 73.2 87 47.1
Aqoxy2G00397 Aquilegia oxysepala HOM05D003387 ORTHO05D005400 2.3e-11 72.8 75 52.0
Cfa002795 Carpinus fangiana HOM05D003387 ORTHO05D005400 2.3e-11 72.8 75 53.3
CiPaw.15G014400 Carya illinoinensis HOM05D003387 ORTHO05D005400 2.3e-11 72.8 75 52.0
ClCG08G002590 Citrullus lanatus HOM05D003387 ORTHO05D005400 2.3e-11 72.8 87 48.3
MELO3C024993.2 Cucumis melo HOM05D003387 ORTHO05D005400 2.3e-11 72.8 87 48.3
CsaV3_6G002770 Cucumis sativus L. HOM05D003387 ORTHO05D005400 2.3e-11 72.8 87 48.3
Lsat_1_v5_gn_9_41940 Lactuca sativa HOM05D003387 ORTHO05D005400 2.3e-11 72.8 75 53.3
PSO541G1407 Papaver somniferum HOM05D003387 ORTHO05D005400 2.3e-11 72.8 75 50.7
PSO675G7282 Papaver somniferum HOM05D003387 ORTHO05D005400 2.3e-11 72.8 75 50.7
ATR1126G056 Amborella trichopoda HOM05D003387 ORTHO05D005400 3.1e-11 72.4 75 50.7
CiPaw.16G009800 Carya illinoinensis HOM05D003387 ORTHO05D005400 3.1e-11 72.4 75 52.0
Ciclev10001148m.g Citrus clementina HOM05D003387 ORTHO05D005400 3.1e-11 72.4 87 48.3
Lj7C377G3 Lonicera japonica HOM05D003387 ORTHO05D005400 3.1e-11 72.4 87 47.1
Lj5g0027187 Lotus japonicus HOM05D003387 ORTHO05D005400 3.1e-11 72.4 75 52.0
MBI16_g07738_MAGBIO Magnolia biondii HOM05D003387 ORTHO05D005400 3.1e-11 72.4 75 52.0
Pp3c14_14100 Physcomitrium patens HOM05D003387 ORTHO05D005400 3.1e-11 72.4 82 43.9
Psat6g192160 Pisum sativum HOM05D003387 ORTHO05D005400 3.1e-11 72.4 75 53.3
VMungo0464G0875 Vigna mungo HOM05D003387 ORTHO05D005400 3.1e-11 72.4 75 49.3
Glyma.10G223300 Glycine max HOM05D003387 ORTHO05D005400 4.0e-11 72.0 75 50.7
Glyma.20G168400 Glycine max HOM05D003387 ORTHO05D005400 4.0e-11 72.0 75 50.7
Manes.02G181600 Manihot esculenta HOM05D003387 ORTHO05D005400 4.0e-11 72.0 87 47.1
Psat1g100400 Pisum sativum HOM05D003387 ORTHO05D005400 4.0e-11 72.0 75 49.3
TWI60G0696 Tripterygium wilfordii HOM05D003387 ORTHO05D005400 4.0e-11 72.0 87 47.1
arahy.Tifrunner.gnm1.ann1.LGJ4PH Arachis hypogaea HOM05D003387 ORTHO05D005400 5.2e-11 71.6 75 52.0
arahy.Tifrunner.gnm1.ann1.RF14FM Arachis hypogaea HOM05D003387 ORTHO05D005400 5.2e-11 71.6 75 52.0
CSS0049572 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D005400 5.2e-11 71.6 75 52.0
Cfa018305 Carpinus fangiana HOM05D003387 ORTHO05D005400 5.2e-11 71.6 75 50.7
Ca_04511_v3 Cicer arietinum L. HOM05D003387 ORTHO05D005400 5.2e-11 71.6 75 50.7
Cc04_g09690 Coffea canephora HOM05D003387 ORTHO05D005400 5.2e-11 71.6 75 50.7
Manes.18G093400 Manihot esculenta HOM05D003387 ORTHO05D005400 5.2e-11 71.6 75 52.0
Pp3c14_17110 Physcomitrium patens HOM05D003387 ORTHO05D005400 5.2e-11 71.6 82 43.9
Sc16g0004050 Simmondsia chinensis HOM05D003387 ORTHO05D005400 5.2e-11 71.6 75 52.0
SGA_v2.0_scaffold274G46519 Striga asiatica HOM05D003387 ORTHO05D005400 5.2e-11 71.6 84 48.8
Thecc.08G155500 Theobroma cacao HOM05D003387 ORTHO05D005400 5.2e-11 71.6 75 52.0
vmacro01482 Vaccinium macrocarpon HOM05D003387 ORTHO05D005400 5.2e-11 71.6 75 52.0
GSVIVG01022282001 Vitis vinifera HOM05D003387 ORTHO05D005400 5.2e-11 71.6 75 52.0
DCAR_014445 Daucus carota HOM05D003387 ORTHO05D005400 6.8e-11 71.2 87 46.0
Duzib116G0668 Durio zibethinus HOM05D003387 ORTHO05D005400 6.8e-11 71.2 87 47.1
HanXRQChr05g0144181 Helianthus annuus HOM05D003387 ORTHO05D005400 6.8e-11 71.2 75 52.0
Medtr1g098530 Medicago truncatula HOM05D003387 ORTHO05D005400 6.8e-11 71.2 75 52.0
Os02g0789700 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D011165 6.8e-11 71.2 76 43.4
QL02p037738 Quercus lobata HOM05D003387 ORTHO05D005400 6.8e-11 71.2 75 50.7
QL02p038708 Quercus lobata HOM05D003387 ORTHO05D005400 6.8e-11 71.2 75 50.7
QL06p031237 Quercus lobata HOM05D003387 ORTHO05D005400 6.8e-11 71.2 75 52.0
SMO146G0032 Selaginella moellendorffii HOM05D003387 ORTHO05D005400 6.8e-11 71.2 75 49.3
Hund26682 Selenicereus undatus HOM05D003387 ORTHO05D005400 6.8e-11 71.2 75 49.3
Sc21g0003950 Simmondsia chinensis HOM05D015224 ORTHO05D011165 6.8e-11 71.2 85 45.9
Solyc10g080720.2 Solanum lycopersicum HOM05D003387 ORTHO05D005400 6.8e-11 71.2 87 49.4
THA.LOC104804671 Tarenaya hassleriana HOM05D003387 ORTHO05D005400 6.8e-11 71.2 75 52.0
BcaB04g17624 Brassica carinata HOM05D003387 ORTHO05D005400 8.9e-11 70.9 75 49.3
Migut.K00003 Erythranthe guttata HOM05D003387 ORTHO05D005400 8.9e-11 70.9 87 44.8
Eucgr.F04205 Eucalyptus grandis HOM05D003387 ORTHO05D005400 8.9e-11 70.9 75 50.7
Thhalv10004261m.g Eutrema salsugineum HOM05D003387 ORTHO05D005400 8.9e-11 70.9 75 49.3
Lalb_Chr19g0130201 Lupinus albus HOM05D003387 ORTHO05D005400 8.9e-11 70.9 75 49.3
PGR042G1308 Punica granatum HOM05D003387 ORTHO05D005400 8.9e-11 70.9 75 49.3
PGSC0003DMG400023660 Solanum tuberosum HOM05D003387 ORTHO05D005400 8.9e-11 70.9 87 48.3
TPR.G17034 Trifolium pratense HOM05D003387 ORTHO05D005400 8.9e-11 70.9 75 52.0
VMungo0720G1662 Vigna mungo HOM05D003387 ORTHO05D005400 8.9e-11 70.9 75 50.7
CSS0039159 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D005400 1.2e-10 70.5 75 52.0
Medtr6g043520 Medicago truncatula HOM05D003387 ORTHO05D005400 1.2e-10 70.5 75 48.0
Phvul.007G081900 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 1.2e-10 70.5 75 49.3
Sp1g32390 Schrenkiella parvula HOM05D003387 ORTHO05D005400 1.2e-10 70.5 75 48.0
Sed0013690 Sechium edule HOM05D003387 ORTHO05D005400 1.2e-10 70.5 87 47.1
Sopen10g031260 Solanum pennellii HOM05D003387 ORTHO05D005400 1.2e-10 70.5 87 48.3
Atru.chr13.2064 Acer truncatum HOM05D003387 ORTHO05D005400 1.5e-10 70.1 87 46.0
ATR0115G003 Amborella trichopoda HOM05D003387 ORTHO05D005400 1.5e-10 70.1 75 50.7
BcaC07g37311 Brassica carinata HOM05D003387 ORTHO05D005400 1.5e-10 70.1 75 49.3
A08p06460 Brassica napus HOM05D003387 ORTHO05D005400 1.5e-10 70.1 75 49.3
C08p07450 Brassica napus HOM05D003387 ORTHO05D005400 1.5e-10 70.1 75 49.3
BolC8t47590H Brassica oleracea HOM05D003387 ORTHO05D005400 1.5e-10 70.1 75 49.3
BraA08t32655Z Brassica rapa HOM05D003387 ORTHO05D005400 1.5e-10 70.1 75 49.3
Haze_25093 Corylus avellana HOM05D003387 ORTHO05D005400 1.5e-10 70.1 75 52.0
Hund19618 Selenicereus undatus HOM05D003387 ORTHO05D005400 1.5e-10 70.1 75 48.0
Sopen12g010100 Solanum pennellii HOM05D003387 ORTHO05D005400 1.5e-10 70.1 87 44.8
PGSC0003DMG400018824 Solanum tuberosum HOM05D003387 ORTHO05D005400 1.5e-10 70.1 87 44.8
Aa31LG6G9950 Aethionema arabicum HOM05D003387 ORTHO05D005400 2.0e-10 69.7 75 49.3
AL1G51590 Arabidopsis lyrata HOM05D003387 ORTHO05D005400 2.0e-10 69.7 75 49.3
AT1G43190 Arabidopsis thaliana HOM05D003387 ORTHO05D005400 2.0e-10 69.7 75 49.3
Carub.0001s3449 Capsella rubella HOM05D003387 ORTHO05D005400 2.0e-10 69.7 75 49.3
CiPaw.04G088200 Carya illinoinensis HOM05D003387 ORTHO05D005400 2.0e-10 69.7 75 50.7
Mapoly0001s0481 Marchantia polymorpha HOM05D003387 ORTHO05D005400 2.0e-10 69.7 75 48.0
Potri.005G194700 Populus trichocarpa HOM05D003387 ORTHO05D005400 2.0e-10 69.7 75 48.0
CARHR035330 Cardamine hirsuta HOM05D003387 ORTHO05D005400 2.6e-10 69.3 75 48.0
CDE06G0083 Ceratophyllum demersum HOM05D003387 ORTHO05D005400 2.6e-10 69.3 75 49.3
Sc26g0003240 Simmondsia chinensis HOM05D012448 ORTHO05D011165 2.6e-10 69.3 101 39.6
TPR.G28008 Trifolium pratense HOM05D003387 ORTHO05D005400 2.6e-10 69.3 75 48.0
Lalb_Chr06g0161681 Lupinus albus HOM05D003387 ORTHO05D005400 4.4e-10 68.6 75 48.0
Lalb_Chr21g0305541 Lupinus albus HOM05D003387 ORTHO05D005400 4.4e-10 68.6 75 48.0
Os01g0867800 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D005400 4.4e-10 68.6 75 49.3
SEGI_27673 Sequoiadendron giganteum HOM05D003387 ORTHO05D005400 4.4e-10 68.6 75 50.7
HPP92_002768 Vanilla planifolia HOM05D003387 ORTHO05D005400 4.4e-10 68.6 75 49.3
Lj2g0008478 Lotus japonicus HOM05D003387 ORTHO05D005400 5.8e-10 68.2 75 49.3
Sc03g0006450 Simmondsia chinensis HOM05D008654 ORTHO05D011165 5.8e-10 68.2 90 41.1
THA.LOC104809206 Tarenaya hassleriana HOM05D003387 ORTHO05D005400 5.8e-10 68.2 75 50.7
Sabra05G0148200 Salix brachista HOM05D003387 ORTHO05D005400 7.5e-10 67.8 75 49.3
Ah.02g123810 Amaranthus hybridus HOM05D003387 ORTHO05D005400 9.8e-10 67.4 75 46.7
EL10Ac6g15237 Beta vulgaris HOM05D003387 ORTHO05D005400 1.3e-09 67.0 75 45.3
CBR_g7995 Chara braunii HOM05D003387 ORTHO05D005400 1.3e-09 67.0 75 46.7
Peaxi162Scf00076g00821 Petunia axillaris HOM05D003387 ORTHO05D005400 1.3e-09 67.0 75 48.0
PSO170G1597 Papaver somniferum HOM05D003387 ORTHO05D005400 2.2e-09 66.2 113 38.9
Zm00001eb348540 Zea mays HOM05D003387 ORTHO05D005400 2.2e-09 66.2 75 49.3
Actinidia10635 Actinidia chinensis HOM05D003387 ORTHO05D005400 2.9e-09 65.9 75 50.7
Sc11g0003900 Simmondsia chinensis HOM05D015224 ORTHO05D011165 3.7e-09 65.5 85 43.5
Medtr6g037550 Medicago truncatula HOM05D003387 ORTHO05D005400 4.9e-09 65.1 75 48.0
Os05g0437300 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D005400 6.4e-09 64.7 75 48.0
Zm00001eb289150 Zea mays HOM05D003387 ORTHO05D005400 8.3e-09 64.3 75 46.7
Sc12g0007750 Simmondsia chinensis HOM05D015224 ORTHO05D011165 1.1e-08 63.9 79 45.6
Sc25g0001610 Simmondsia chinensis HOM05D015224 ORTHO05D011165 1.4e-08 63.5 119 36.1
CDE08G0132 Ceratophyllum demersum HOM05D003387 ORTHO05D005400 1.7e-06 56.6 61 45.9
Hund06101 Selenicereus undatus HOM05D008449 ORTHO05D010615 5.1e-06 55.1 123 37.4
Lj8C37T13 Lonicera japonica HOM05D003387 ORTHO05D235663 6.6e-06 54.7 78 39.7
Hund01119 Selenicereus undatus HOM05D008449 ORTHO05D010615 6.6e-06 54.7 75 45.3
Hund03451 Selenicereus undatus HOM05D008449 ORTHO05D010615 6.6e-06 54.7 75 45.3
Hund01476 Selenicereus undatus HOM05D008449 ORTHO05D010615 8.6e-06 54.3 74 40.5
Hund04197 Selenicereus undatus HOM05D008449 ORTHO05D010615 8.6e-06 54.3 75 45.3


User provided reference genes

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