Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0007970 Simmondsia chinensis HOM05D003387 ORTHO05D011165 4.2e-75 284.6 147 100.0
Sc07g0005580 Simmondsia chinensis HOM05D003387 ORTHO05D011165 5.7e-32 141.4 135 54.1
Sc07g0005590 Simmondsia chinensis HOM05D003387 ORTHO05D011165 9.7e-32 140.6 135 54.1
Sc15g0003120 Simmondsia chinensis HOM05D003387 ORTHO05D011165 3.7e-23 112.1 90 63.3
Sc16g0004730 Simmondsia chinensis HOM05D003387 ORTHO05D011165 3.5e-21 105.5 86 64.0
Sc16g0004600 Simmondsia chinensis HOM05D008654 ORTHO05D011165 6.1e-18 94.7 113 50.4
Sc13g0008890 Simmondsia chinensis HOM05D031019 ORTHO05D011165 3.0e-17 92.4 110 47.3
Sc22g0004350 Simmondsia chinensis HOM05D028099 ORTHO05D011165 2.6e-16 89.4 131 37.4
Sc21g0004200 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.3e-15 87.0 81 54.3
Sc02g0004440 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.7e-15 86.7 85 48.2
Sc20g0003080 Simmondsia chinensis HOM05D012448 ORTHO05D011165 2.8e-15 85.9 80 48.8
Sc18g0004320 Simmondsia chinensis HOM05D031019 ORTHO05D011165 4.9e-15 85.1 124 38.7
Sc26g0003450 Simmondsia chinensis HOM05D031019 ORTHO05D011165 4.9e-15 85.1 118 41.5
Sc01g0004380 Simmondsia chinensis HOM05D031019 ORTHO05D011165 4.1e-14 82.0 103 45.6
Sc17g0002610 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.0e-12 77.4 118 38.1
Sc04g0006840 Simmondsia chinensis HOM05D003387 ORTHO05D011165 3.8e-12 75.5 80 45.0
Sc04g0003810 Simmondsia chinensis HOM05D012448 ORTHO05D011165 8.6e-12 74.3 83 44.6
Sc09g0007220 Simmondsia chinensis HOM05D003387 ORTHO05D011165 8.6e-12 74.3 84 47.6
Sc07g0005070 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.1e-11 73.9 83 42.2
Sc03g0007670 Simmondsia chinensis HOM05D012448 ORTHO05D011165 3.3e-11 72.4 89 43.8
Sc03g0005120 Simmondsia chinensis HOM05D015224 ORTHO05D011165 5.6e-11 71.6 87 46.0
Sc07g0004700 Simmondsia chinensis HOM05D012448 ORTHO05D011165 5.6e-11 71.6 83 42.2
Sc03g0006450 Simmondsia chinensis HOM05D008654 ORTHO05D011165 2.1e-10 69.7 86 46.5
Sc25g0003800 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.0e-09 67.4 84 41.7
Ca_10675_v3 Cicer arietinum L. HOM05D003387 ORTHO05D005400 1.4e-09 67.0 89 44.9
Psat6g192160 Pisum sativum HOM05D003387 ORTHO05D005400 1.8e-09 66.6 89 44.9
Sc14g0005430 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.8e-09 66.6 82 40.2
Sc16g0004050 Simmondsia chinensis HOM05D003387 ORTHO05D005400 3.1e-09 65.9 89 43.8
Medtr1g098530 Medicago truncatula HOM05D003387 ORTHO05D005400 4.0e-09 65.5 89 43.8
ATR0115G003 Amborella trichopoda HOM05D003387 ORTHO05D005400 5.2e-09 65.1 89 42.7
Glyma.10G223300 Glycine max HOM05D003387 ORTHO05D005400 5.2e-09 65.1 89 42.7
Glyma.20G168400 Glycine max HOM05D003387 ORTHO05D005400 5.2e-09 65.1 89 42.7
Hund19618 Selenicereus undatus HOM05D003387 ORTHO05D005400 5.2e-09 65.1 89 41.6
TPR.G17034 Trifolium pratense HOM05D003387 ORTHO05D005400 5.2e-09 65.1 89 43.8
Lj5g0027187 Lotus japonicus HOM05D003387 ORTHO05D005400 6.8e-09 64.7 89 42.7
Pp3c14_14100 Physcomitrium patens HOM05D003387 ORTHO05D005400 6.8e-09 64.7 98 38.8
AagrBONN_evm.TU.Sc2ySwM_368.3328 Anthoceros agrestis HOM05D003387 ORTHO05D005400 8.9e-09 64.3 121 34.7
arahy.Tifrunner.gnm1.ann1.LGJ4PH Arachis hypogaea HOM05D003387 ORTHO05D005400 8.9e-09 64.3 89 42.7
arahy.Tifrunner.gnm1.ann1.RF14FM Arachis hypogaea HOM05D003387 ORTHO05D005400 8.9e-09 64.3 89 42.7
Glyma.02G080500 Glycine max HOM05D003387 ORTHO05D005400 8.9e-09 64.3 89 42.7
Glyma.16G165000 Glycine max HOM05D003387 ORTHO05D005400 8.9e-09 64.3 89 42.7
Phvul.004G092400 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 8.9e-09 64.3 89 42.7
Sc08g0005810 Simmondsia chinensis HOM05D012448 ORTHO05D011165 8.9e-09 64.3 78 38.5
arahy.Tifrunner.gnm1.ann1.9CFF48 Arachis hypogaea HOM05D003387 ORTHO05D005400 1.2e-08 63.9 89 42.7
arahy.Tifrunner.gnm1.ann1.K61U57 Arachis hypogaea HOM05D003387 ORTHO05D005400 1.2e-08 63.9 89 42.7
Pp3c14_17110 Physcomitrium patens HOM05D003387 ORTHO05D005400 1.2e-08 63.9 98 38.8
Sc22g0003270 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.2e-08 63.9 82 43.9
BcaB04g17624 Brassica carinata HOM05D003387 ORTHO05D005400 1.5e-08 63.5 89 42.7
CiPaw.16G009800 Carya illinoinensis HOM05D003387 ORTHO05D005400 1.5e-08 63.5 89 43.8
Lalb_Chr02g0141481 Lupinus albus HOM05D003387 ORTHO05D005400 1.5e-08 63.5 94 39.4
Nn1g06041 Nelumbo nucifera HOM05D003387 ORTHO05D005400 1.5e-08 63.5 89 43.8
Phvul.007G081900 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 1.5e-08 63.5 89 41.6
Sc09g0006000 Simmondsia chinensis HOM05D015224 ORTHO05D388293 1.5e-08 63.5 101 33.7
Sc11g0004550 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.5e-08 63.5 79 43.0
THA.LOC104804671 Tarenaya hassleriana HOM05D003387 ORTHO05D005400 1.5e-08 63.5 89 43.8
VMungo0720G1662 Vigna mungo HOM05D003387 ORTHO05D005400 1.5e-08 63.5 89 41.6
Ah.05g168100 Amaranthus hybridus HOM05D003387 ORTHO05D005400 2.0e-08 63.2 89 41.6
ATR1126G056 Amborella trichopoda HOM05D003387 ORTHO05D005400 2.0e-08 63.2 89 41.6
SalBow1G1267 Salvia bowleyana HOM05D003387 ORTHO05D005400 2.0e-08 63.2 94 41.5
VMungo0464G0875 Vigna mungo HOM05D003387 ORTHO05D005400 2.0e-08 63.2 89 41.6
CANSAT25G0465 Cannabis sativa HOM05D003387 ORTHO05D005400 2.6e-08 62.8 89 41.6
CiPaw.15G014400 Carya illinoinensis HOM05D003387 ORTHO05D005400 2.6e-08 62.8 89 42.7
Thhalv10004261m.g Eutrema salsugineum HOM05D003387 ORTHO05D005400 2.6e-08 62.8 89 41.6
Sp1g32390 Schrenkiella parvula HOM05D003387 ORTHO05D005400 2.6e-08 62.8 89 41.6
BcaC07g37311 Brassica carinata HOM05D003387 ORTHO05D005400 3.4e-08 62.4 89 42.7
A08p06460 Brassica napus HOM05D003387 ORTHO05D005400 3.4e-08 62.4 89 42.7
C08p07450 Brassica napus HOM05D003387 ORTHO05D005400 3.4e-08 62.4 89 42.7
BolC8t47590H Brassica oleracea HOM05D003387 ORTHO05D005400 3.4e-08 62.4 89 42.7
BraA08t32655Z Brassica rapa HOM05D003387 ORTHO05D005400 3.4e-08 62.4 89 42.7
FvH4_2g13280 Fragaria vesca HOM05D003387 ORTHO05D005400 3.4e-08 62.4 89 41.6
FAN20G0358 Fragaria x ananassa HOM05D003387 ORTHO05D005400 3.4e-08 62.4 89 41.6
FAN24G3173 Fragaria x ananassa HOM05D003387 ORTHO05D005400 3.4e-08 62.4 89 41.6
MD04G1044700 Malus domestica HOM05D003387 ORTHO05D005400 3.4e-08 62.4 89 41.6
Mapoly0001s0481 Marchantia polymorpha HOM05D003387 ORTHO05D005400 3.4e-08 62.4 93 38.7
Nn5g28791 Nelumbo nucifera HOM05D003387 ORTHO05D005400 3.4e-08 62.4 89 42.7
Prupe.8G036700 Prunus persica HOM05D003387 ORTHO05D005400 3.4e-08 62.4 89 41.6
RcHm_v2.0_Chr6g0274691 Rosa chinensis HOM05D003387 ORTHO05D005400 3.4e-08 62.4 89 41.6
Sc25g0001610 Simmondsia chinensis HOM05D015224 ORTHO05D011165 3.4e-08 62.4 71 47.9
Solyc10g080720.2 Solanum lycopersicum HOM05D003387 ORTHO05D005400 3.4e-08 62.4 89 42.7
Cfa018305 Carpinus fangiana HOM05D003387 ORTHO05D005400 4.4e-08 62.0 89 41.6
SMO146G0032 Selaginella moellendorffii HOM05D003387 ORTHO05D005400 4.4e-08 62.0 89 41.6
Sc21g0003950 Simmondsia chinensis HOM05D015224 ORTHO05D011165 4.4e-08 62.0 95 38.9
PGSC0003DMG400023660 Solanum tuberosum HOM05D003387 ORTHO05D005400 4.4e-08 62.0 89 42.7
GSVIVG01034558001 Vitis vinifera HOM05D003387 ORTHO05D005400 4.4e-08 62.0 89 41.6
Aa31LG6G9950 Aethionema arabicum HOM05D003387 ORTHO05D005400 5.8e-08 61.6 89 41.6
AL1G51590 Arabidopsis lyrata HOM05D003387 ORTHO05D005400 5.8e-08 61.6 89 41.6
AT1G43190 Arabidopsis thaliana HOM05D003387 ORTHO05D005400 5.8e-08 61.6 89 41.6
Carub.0001s3449 Capsella rubella HOM05D003387 ORTHO05D005400 5.8e-08 61.6 89 41.6
CARHR035330 Cardamine hirsuta HOM05D003387 ORTHO05D005400 5.8e-08 61.6 89 41.6
Lj2g0008478 Lotus japonicus HOM05D003387 ORTHO05D005400 5.8e-08 61.6 89 42.7
HPP92_002768 Vanilla planifolia HOM05D003387 ORTHO05D005400 5.8e-08 61.6 89 41.6
Aqoxy2G00397 Aquilegia oxysepala HOM05D003387 ORTHO05D005400 7.5e-08 61.2 89 41.6
CDE06G0083 Ceratophyllum demersum HOM05D003387 ORTHO05D005400 7.5e-08 61.2 89 41.6
Peaxi162Scf00076g00821 Petunia axillaris HOM05D003387 ORTHO05D005400 7.5e-08 61.2 89 40.4
Potri.002G066000 Populus trichocarpa HOM05D003387 ORTHO05D005400 7.5e-08 61.2 89 41.6
QL02p037738 Quercus lobata HOM05D003387 ORTHO05D005400 7.5e-08 61.2 89 41.6
QL02p038708 Quercus lobata HOM05D003387 ORTHO05D005400 7.5e-08 61.2 89 41.6
Sopen10g031260 Solanum pennellii HOM05D003387 ORTHO05D005400 7.5e-08 61.2 89 42.7
TWI60G0696 Tripterygium wilfordii HOM05D003387 ORTHO05D005400 7.5e-08 61.2 89 41.6
TAR376G0277 Trochodendron aralioides HOM05D003387 ORTHO05D005400 7.5e-08 61.2 89 41.6
vmacro01482 Vaccinium macrocarpon HOM05D003387 ORTHO05D005400 7.5e-08 61.2 89 40.4
Ah.02g123810 Amaranthus hybridus HOM05D003387 ORTHO05D005400 9.8e-08 60.8 89 39.3
Cfa002795 Carpinus fangiana HOM05D003387 ORTHO05D005400 9.8e-08 60.8 89 42.7
Eucgr.F02695 Eucalyptus grandis HOM05D003387 ORTHO05D005400 9.8e-08 60.8 89 42.7
FAN15G3239 Fragaria x ananassa HOM05D003387 ORTHO05D005400 9.8e-08 60.8 89 40.4
Os01g0867800 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D005400 9.8e-08 60.8 89 41.6
PSO700G0143 Papaver somniferum HOM05D003387 ORTHO05D005400 9.8e-08 60.8 89 40.4
Hund26682 Selenicereus undatus HOM05D003387 ORTHO05D005400 9.8e-08 60.8 89 40.4
Sc12g0007940 Simmondsia chinensis HOM05D012448 ORTHO05D011165 9.8e-08 60.8 83 38.6
TPR.G28008 Trifolium pratense HOM05D003387 ORTHO05D005400 9.8e-08 60.8 89 40.4
TAR628G0869 Trochodendron aralioides HOM05D003387 ORTHO05D005400 9.8e-08 60.8 89 41.6
Lalb_Chr06g0161681 Lupinus albus HOM05D003387 ORTHO05D005400 1.3e-07 60.5 89 39.3
Lalb_Chr21g0305541 Lupinus albus HOM05D003387 ORTHO05D005400 1.3e-07 60.5 89 39.3
Sopen12g010100 Solanum pennellii HOM05D003387 ORTHO05D005400 1.3e-07 60.5 89 40.4
PGSC0003DMG400018824 Solanum tuberosum HOM05D003387 ORTHO05D005400 1.3e-07 60.5 89 40.4
THA.LOC104809206 Tarenaya hassleriana HOM05D003387 ORTHO05D005400 1.3e-07 60.5 89 42.7
TWI34G1705 Tripterygium wilfordii HOM05D003387 ORTHO05D005400 1.3e-07 60.5 89 40.4
ClCG08G002590 Citrullus lanatus HOM05D003387 ORTHO05D005400 1.7e-07 60.1 89 40.4
MELO3C024993.2 Cucumis melo HOM05D003387 ORTHO05D005400 1.7e-07 60.1 89 40.4
CsaV3_6G002770 Cucumis sativus L. HOM05D003387 ORTHO05D005400 1.7e-07 60.1 89 40.4
ECA232G0053 Erigeron canadensis HOM05D003387 ORTHO05D005400 1.7e-07 60.1 89 39.3
Lalb_Chr19g0130201 Lupinus albus HOM05D003387 ORTHO05D005400 1.7e-07 60.1 89 40.4
Medtr6g037550 Medicago truncatula HOM05D003387 ORTHO05D005400 1.7e-07 60.1 89 40.4
PSO541G1407 Papaver somniferum HOM05D003387 ORTHO05D005400 1.7e-07 60.1 89 40.4
PSO675G7282 Papaver somniferum HOM05D003387 ORTHO05D005400 1.7e-07 60.1 89 40.4
Potri.005G194700 Populus trichocarpa HOM05D003387 ORTHO05D005400 1.7e-07 60.1 89 39.3
EL10Ac6g15237 Beta vulgaris HOM05D003387 ORTHO05D005400 2.2e-07 59.7 78 41.0
Ca_04511_v3 Cicer arietinum L. HOM05D003387 ORTHO05D005400 2.2e-07 59.7 89 41.6
Cc04_g09690 Coffea canephora HOM05D003387 ORTHO05D005400 2.2e-07 59.7 89 40.4
Migut.K00003 Erythranthe guttata HOM05D003387 ORTHO05D005400 2.2e-07 59.7 89 40.4
MBI16_g07738_MAGBIO Magnolia biondii HOM05D003387 ORTHO05D005400 2.2e-07 59.7 78 43.6
Medtr6g043520 Medicago truncatula HOM05D003387 ORTHO05D005400 2.2e-07 59.7 89 40.4
Os05g0437300 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D005400 2.2e-07 59.7 89 40.4
Psat1g100400 Pisum sativum HOM05D003387 ORTHO05D005400 2.2e-07 59.7 89 40.4
Sed0017554 Sechium edule HOM05D003387 ORTHO05D005400 2.2e-07 59.7 89 40.4
CSS0039159 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D005400 2.9e-07 59.3 89 41.6
CSS0049572 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D005400 2.9e-07 59.3 89 40.4
CiPaw.04G088200 Carya illinoinensis HOM05D003387 ORTHO05D005400 2.9e-07 59.3 89 41.6
Duzib093G0739 Durio zibethinus HOM05D003387 ORTHO05D005400 2.9e-07 59.3 89 40.4
Duzib116G0668 Durio zibethinus HOM05D003387 ORTHO05D005400 2.9e-07 59.3 89 40.4
Eucgr.F04205 Eucalyptus grandis HOM05D003387 ORTHO05D005400 2.9e-07 59.3 89 40.4
Gohir.A02G063500 Gossypium hirsutum HOM05D003387 ORTHO05D005400 2.9e-07 59.3 89 40.4
Gohir.D02G069100 Gossypium hirsutum HOM05D003387 ORTHO05D005400 2.9e-07 59.3 89 40.4
Gorai.005G078200 Gossypium raimondii HOM05D003387 ORTHO05D005400 2.9e-07 59.3 89 40.4
Manes.02G181600 Manihot esculenta HOM05D003387 ORTHO05D005400 2.9e-07 59.3 89 40.4
Manes.18G093400 Manihot esculenta HOM05D003387 ORTHO05D005400 2.9e-07 59.3 89 40.4
SGA_v2.0_scaffold274G46519 Striga asiatica HOM05D003387 ORTHO05D005400 2.9e-07 59.3 83 42.2
Atru.chr13.2064 Acer truncatum HOM05D003387 ORTHO05D005400 3.7e-07 58.9 89 40.4
Lsat_1_v5_gn_9_41940 Lactuca sativa HOM05D003387 ORTHO05D005400 3.7e-07 58.9 89 40.4
Sc26g0003240 Simmondsia chinensis HOM05D012448 ORTHO05D011165 3.7e-07 58.9 83 38.6
GSVIVG01022282001 Vitis vinifera HOM05D003387 ORTHO05D005400 3.7e-07 58.9 89 40.4
CBR_g7995 Chara braunii HOM05D003387 ORTHO05D005400 4.9e-07 58.5 89 39.3
Dinv25885 Davidia involucrata HOM05D003387 ORTHO05D005400 4.9e-07 58.5 89 40.4
PGR042G1308 Punica granatum HOM05D003387 ORTHO05D005400 4.9e-07 58.5 89 38.2
Sc09g0006480 Simmondsia chinensis HOM05D012448 ORTHO05D011165 4.9e-07 58.5 76 43.4
Thecc.08G155500 Theobroma cacao HOM05D003387 ORTHO05D005400 4.9e-07 58.5 89 40.4
Zm00001eb348540 Zea mays HOM05D003387 ORTHO05D005400 4.9e-07 58.5 89 39.3
Haze_25093 Corylus avellana HOM05D003387 ORTHO05D005400 6.4e-07 58.2 89 41.6
DCAR_014445 Daucus carota HOM05D003387 ORTHO05D005400 6.4e-07 58.2 89 39.3
Lj7C377G3 Lonicera japonica HOM05D003387 ORTHO05D005400 6.4e-07 58.2 89 39.3
QL06p031237 Quercus lobata HOM05D003387 ORTHO05D005400 6.4e-07 58.2 89 41.6
Ciclev10001148m.g Citrus clementina HOM05D003387 ORTHO05D005400 8.3e-07 57.8 89 40.4
Sabra05G0148200 Salix brachista HOM05D003387 ORTHO05D005400 8.3e-07 57.8 89 40.4
Sed0013690 Sechium edule HOM05D003387 ORTHO05D005400 8.3e-07 57.8 89 39.3
HanXRQChr05g0144181 Helianthus annuus HOM05D003387 ORTHO05D005400 1.1e-06 57.4 89 39.3
Zm00001eb289150 Zea mays HOM05D003387 ORTHO05D005400 1.1e-06 57.4 89 39.3
Os02g0789700 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D011165 1.4e-06 57.0 99 33.3
SEGI_27673 Sequoiadendron giganteum HOM05D003387 ORTHO05D005400 1.4e-06 57.0 89 38.2
Sabra02G0052700 Salix brachista HOM05D003387 ORTHO05D005400 1.9e-06 56.6 89 40.4
Lj8C37T13 Lonicera japonica HOM05D003387 ORTHO05D235663 2.4e-06 56.2 78 41.0
Sc11g0003900 Simmondsia chinensis HOM05D015224 ORTHO05D011165 3.2e-06 55.8 81 43.2


User provided reference genes

Program Settings