Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0007750 Simmondsia chinensis HOM05D015224 ORTHO05D011165 1.8e-131 472.6 242 100.0
Sc21g0003950 Simmondsia chinensis HOM05D015224 ORTHO05D011165 2.6e-58 229.6 163 73.6
Sc11g0003900 Simmondsia chinensis HOM05D015224 ORTHO05D011165 6.1e-23 112.1 100 63.0
Sc03g0005120 Simmondsia chinensis HOM05D015224 ORTHO05D011165 6.3e-20 102.1 139 43.2
Sc15g0002480 Simmondsia chinensis HOM05D015224 ORTHO05D388340 7.0e-19 98.6 61 82.0
Sc25g0001610 Simmondsia chinensis HOM05D015224 ORTHO05D011165 1.4e-14 84.3 69 63.8
Sc26g0003450 Simmondsia chinensis HOM05D031019 ORTHO05D011165 5.7e-13 79.0 114 40.4
Sc21g0004200 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.3e-12 77.8 118 42.4
Sc18g0004320 Simmondsia chinensis HOM05D031019 ORTHO05D011165 1.2e-10 71.2 76 50.0
Sc13g0008890 Simmondsia chinensis HOM05D031019 ORTHO05D011165 1.3e-09 67.8 162 33.3
Sc20g0003080 Simmondsia chinensis HOM05D012448 ORTHO05D011165 2.3e-09 67.0 100 37.0
Sc22g0004350 Simmondsia chinensis HOM05D028099 ORTHO05D011165 2.9e-09 66.6 75 45.3
Sc04g0003810 Simmondsia chinensis HOM05D012448 ORTHO05D011165 3.8e-09 66.2 81 42.0
Psat6g192160 Pisum sativum HOM05D003387 ORTHO05D005400 6.6e-09 65.5 102 43.1
Sc16g0004050 Simmondsia chinensis HOM05D003387 ORTHO05D005400 8.6e-09 65.1 99 44.4
Sc16g0004600 Simmondsia chinensis HOM05D008654 ORTHO05D011165 8.6e-09 65.1 78 46.2
Sc07g0004700 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.5e-08 64.3 83 38.6
VMungo0720G1662 Vigna mungo HOM05D003387 ORTHO05D005400 1.5e-08 64.3 102 42.2
Hund19618 Selenicereus undatus HOM05D003387 ORTHO05D005400 1.9e-08 63.9 102 42.2
arahy.Tifrunner.gnm1.ann1.LGJ4PH Arachis hypogaea HOM05D003387 ORTHO05D005400 2.5e-08 63.5 102 42.2
arahy.Tifrunner.gnm1.ann1.RF14FM Arachis hypogaea HOM05D003387 ORTHO05D005400 2.5e-08 63.5 102 42.2
Ca_10675_v3 Cicer arietinum L. HOM05D003387 ORTHO05D005400 2.5e-08 63.5 102 41.2
Lj5g0027187 Lotus japonicus HOM05D003387 ORTHO05D005400 2.5e-08 63.5 102 41.2
ECA232G0053 Erigeron canadensis HOM05D003387 ORTHO05D005400 3.3e-08 63.2 117 37.6
Glyma.10G223300 Glycine max HOM05D003387 ORTHO05D005400 3.3e-08 63.2 102 40.2
Glyma.20G168400 Glycine max HOM05D003387 ORTHO05D005400 3.3e-08 63.2 102 40.2
Medtr1g098530 Medicago truncatula HOM05D003387 ORTHO05D005400 3.3e-08 63.2 102 41.2
Ah.05g168100 Amaranthus hybridus HOM05D003387 ORTHO05D005400 4.3e-08 62.8 173 32.4
Nn1g06041 Nelumbo nucifera HOM05D003387 ORTHO05D005400 4.3e-08 62.8 99 43.4
Phvul.007G081900 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 4.3e-08 62.8 102 40.2
TPR.G17034 Trifolium pratense HOM05D003387 ORTHO05D005400 4.3e-08 62.8 102 41.2
BcaB04g17624 Brassica carinata HOM05D003387 ORTHO05D005400 7.3e-08 62.0 99 40.4
Sc15g0003120 Simmondsia chinensis HOM05D003387 ORTHO05D011165 7.3e-08 62.0 79 45.6
vmacro01482 Vaccinium macrocarpon HOM05D003387 ORTHO05D005400 7.3e-08 62.0 99 41.4
Lsat_1_v5_gn_9_41940 Lactuca sativa HOM05D003387 ORTHO05D005400 9.5e-08 61.6 99 43.4
Sc23g0004730 Simmondsia chinensis HOM05D015224 ORTHO05D388619 9.5e-08 61.6 74 52.7
THA.LOC104804671 Tarenaya hassleriana HOM05D003387 ORTHO05D005400 1.2e-07 61.2 99 41.4
EL10Ac6g15237 Beta vulgaris HOM05D003387 ORTHO05D005400 1.6e-07 60.8 99 39.4
CiPaw.15G014400 Carya illinoinensis HOM05D003387 ORTHO05D005400 1.6e-07 60.8 102 40.2
Lalb_Chr02g0141481 Lupinus albus HOM05D003387 ORTHO05D005400 1.6e-07 60.8 102 39.2
TAR376G0277 Trochodendron aralioides HOM05D003387 ORTHO05D005400 1.6e-07 60.8 99 41.4
arahy.Tifrunner.gnm1.ann1.9CFF48 Arachis hypogaea HOM05D003387 ORTHO05D005400 2.1e-07 60.5 102 40.2
arahy.Tifrunner.gnm1.ann1.K61U57 Arachis hypogaea HOM05D003387 ORTHO05D005400 2.1e-07 60.5 102 40.2
Glyma.02G080500 Glycine max HOM05D003387 ORTHO05D005400 2.1e-07 60.5 102 39.2
Glyma.16G165000 Glycine max HOM05D003387 ORTHO05D005400 2.1e-07 60.5 102 39.2
Lalb_Chr06g0161681 Lupinus albus HOM05D003387 ORTHO05D005400 2.1e-07 60.5 102 39.2
Lalb_Chr21g0305541 Lupinus albus HOM05D003387 ORTHO05D005400 2.1e-07 60.5 102 39.2
Phvul.004G092400 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 2.1e-07 60.5 102 39.2
Cfa002795 Carpinus fangiana HOM05D003387 ORTHO05D005400 2.8e-07 60.1 99 39.4
Gohir.A02G063500 Gossypium hirsutum HOM05D003387 ORTHO05D005400 2.8e-07 60.1 79 46.8
Gohir.D02G069100 Gossypium hirsutum HOM05D003387 ORTHO05D005400 2.8e-07 60.1 79 46.8
Gorai.005G078200 Gossypium raimondii HOM05D003387 ORTHO05D005400 2.8e-07 60.1 79 46.8
Nn5g28791 Nelumbo nucifera HOM05D003387 ORTHO05D005400 2.8e-07 60.1 99 40.4
PGR042G1308 Punica granatum HOM05D003387 ORTHO05D005400 2.8e-07 60.1 99 39.4
GSVIVG01034558001 Vitis vinifera HOM05D003387 ORTHO05D005400 2.8e-07 60.1 99 40.4
PSO700G0143 Papaver somniferum HOM05D003387 ORTHO05D005400 3.6e-07 59.7 99 41.4
SalBow1G1267 Salvia bowleyana HOM05D003387 ORTHO05D005400 3.6e-07 59.7 99 41.4
Sc04g0006840 Simmondsia chinensis HOM05D003387 ORTHO05D011165 3.6e-07 59.7 163 28.8
Sc14g0005430 Simmondsia chinensis HOM05D012448 ORTHO05D011165 3.6e-07 59.7 161 26.7
GSVIVG01022282001 Vitis vinifera HOM05D003387 ORTHO05D005400 3.6e-07 59.7 99 40.4
Eucgr.F04205 Eucalyptus grandis HOM05D003387 ORTHO05D005400 4.7e-07 59.3 108 36.1
Sc09g0007220 Simmondsia chinensis HOM05D003387 ORTHO05D011165 4.7e-07 59.3 78 47.4
Sc23g0004550 Simmondsia chinensis HOM05D015224 ORTHO05D388671 4.7e-07 59.3 74 51.4
VMungo0464G0875 Vigna mungo HOM05D003387 ORTHO05D005400 4.7e-07 59.3 102 38.2
BcaC07g37311 Brassica carinata HOM05D003387 ORTHO05D005400 6.1e-07 58.9 99 39.4
A08p06460 Brassica napus HOM05D003387 ORTHO05D005400 6.1e-07 58.9 99 39.4
C08p07450 Brassica napus HOM05D003387 ORTHO05D005400 6.1e-07 58.9 99 39.4
BolC8t47590H Brassica oleracea HOM05D003387 ORTHO05D005400 6.1e-07 58.9 99 39.4
BraA08t32655Z Brassica rapa HOM05D003387 ORTHO05D005400 6.1e-07 58.9 99 39.4
Dinv25885 Davidia involucrata HOM05D003387 ORTHO05D005400 6.1e-07 58.9 99 40.4
HanXRQChr05g0144181 Helianthus annuus HOM05D003387 ORTHO05D005400 6.1e-07 58.9 99 41.4
Lj7C377G3 Lonicera japonica HOM05D003387 ORTHO05D005400 6.1e-07 58.9 99 40.4
TAR628G0869 Trochodendron aralioides HOM05D003387 ORTHO05D005400 6.1e-07 58.9 99 40.4
Cfa018305 Carpinus fangiana HOM05D003387 ORTHO05D005400 8.0e-07 58.5 102 38.2
CiPaw.16G009800 Carya illinoinensis HOM05D003387 ORTHO05D005400 8.0e-07 58.5 102 39.2
Eucgr.F02695 Eucalyptus grandis HOM05D003387 ORTHO05D005400 8.0e-07 58.5 133 33.1
Potri.005G194700 Populus trichocarpa HOM05D003387 ORTHO05D005400 8.0e-07 58.5 99 38.4
Aqoxy2G00397 Aquilegia oxysepala HOM05D003387 ORTHO05D005400 1.0e-06 58.2 99 38.4
Os01g0867800 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D005400 1.0e-06 58.2 102 38.2
QL06p031237 Quercus lobata HOM05D003387 ORTHO05D005400 1.0e-06 58.2 99 39.4
Sc07g0005580 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.0e-06 58.2 102 38.2
Sc17g0002610 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.0e-06 58.2 77 45.5
CBR_g7995 Chara braunii HOM05D003387 ORTHO05D005400 1.4e-06 57.8 84 42.9
Ca_04511_v3 Cicer arietinum L. HOM05D003387 ORTHO05D005400 1.4e-06 57.8 102 39.2
DCAR_014445 Daucus carota HOM05D003387 ORTHO05D005400 1.4e-06 57.8 102 39.2
Duzib093G0739 Durio zibethinus HOM05D003387 ORTHO05D005400 1.4e-06 57.8 79 44.3
PSO675G7282 Papaver somniferum HOM05D003387 ORTHO05D005400 1.4e-06 57.8 102 38.2
Potri.002G066000 Populus trichocarpa HOM05D003387 ORTHO05D005400 1.4e-06 57.8 99 39.4
QL02p037738 Quercus lobata HOM05D003387 ORTHO05D005400 1.4e-06 57.8 102 38.2
QL02p038708 Quercus lobata HOM05D003387 ORTHO05D005400 1.4e-06 57.8 102 38.2
Sc01g0004380 Simmondsia chinensis HOM05D031019 ORTHO05D011165 1.4e-06 57.8 75 45.3
Ah.02g123810 Amaranthus hybridus HOM05D003387 ORTHO05D005400 1.8e-06 57.4 84 42.9
CDE06G0083 Ceratophyllum demersum HOM05D003387 ORTHO05D005400 1.8e-06 57.4 102 40.2
Haze_25093 Corylus avellana HOM05D003387 ORTHO05D005400 1.8e-06 57.4 99 38.4
Thhalv10004261m.g Eutrema salsugineum HOM05D003387 ORTHO05D005400 1.8e-06 57.4 99 38.4
PSO541G1407 Papaver somniferum HOM05D003387 ORTHO05D005400 1.8e-06 57.4 141 33.3
SMO146G0032 Selaginella moellendorffii HOM05D003387 ORTHO05D005400 1.8e-06 57.4 99 38.4
CiPaw.04G088200 Carya illinoinensis HOM05D003387 ORTHO05D005400 2.3e-06 57.0 99 37.4
FAN15G3239 Fragaria x ananassa HOM05D003387 ORTHO05D005400 2.3e-06 57.0 117 34.2
Lj2g0008478 Lotus japonicus HOM05D003387 ORTHO05D005400 2.3e-06 57.0 84 44.0
Sp1g32390 Schrenkiella parvula HOM05D003387 ORTHO05D005400 2.3e-06 57.0 99 37.4
Sc03g0007670 Simmondsia chinensis HOM05D012448 ORTHO05D011165 2.3e-06 57.0 78 38.5
Thecc.08G155500 Theobroma cacao HOM05D003387 ORTHO05D005400 2.3e-06 57.0 79 44.3
TWI34G1705 Tripterygium wilfordii HOM05D003387 ORTHO05D005400 2.3e-06 57.0 99 36.4
TWI60G0696 Tripterygium wilfordii HOM05D003387 ORTHO05D005400 2.3e-06 57.0 102 40.2
HPP92_002768 Vanilla planifolia HOM05D003387 ORTHO05D005400 2.3e-06 57.0 102 39.2
CSS0049572 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D005400 3.0e-06 56.6 99 39.4
Carub.0001s3449 Capsella rubella HOM05D003387 ORTHO05D005400 3.0e-06 56.6 102 38.2
Manes.18G093400 Manihot esculenta HOM05D003387 ORTHO05D005400 3.0e-06 56.6 84 41.7
Psat1g100400 Pisum sativum HOM05D003387 ORTHO05D005400 3.0e-06 56.6 102 37.3
Sopen12g010100 Solanum pennellii HOM05D003387 ORTHO05D005400 3.0e-06 56.6 99 38.4
PGSC0003DMG400018824 Solanum tuberosum HOM05D003387 ORTHO05D005400 3.0e-06 56.6 99 38.4
Zm00001eb289150 Zea mays HOM05D003387 ORTHO05D005400 3.0e-06 56.6 102 38.2
Aa31LG6G9950 Aethionema arabicum HOM05D003387 ORTHO05D005400 4.0e-06 56.2 99 38.4
AL1G51590 Arabidopsis lyrata HOM05D003387 ORTHO05D005400 4.0e-06 56.2 102 38.2
AT1G43190 Arabidopsis thaliana HOM05D003387 ORTHO05D005400 4.0e-06 56.2 102 38.2
CSS0039159 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D005400 4.0e-06 56.2 99 40.4
CANSAT25G0465 Cannabis sativa HOM05D003387 ORTHO05D005400 4.0e-06 56.2 99 37.4
Ciclev10001148m.g Citrus clementina HOM05D003387 ORTHO05D005400 4.0e-06 56.2 102 38.2
Lalb_Chr19g0130201 Lupinus albus HOM05D003387 ORTHO05D005400 4.0e-06 56.2 79 41.8
Pp3c14_14100 Physcomitrium patens HOM05D003387 ORTHO05D005400 4.0e-06 56.2 103 36.9
Prupe.8G036700 Prunus persica HOM05D003387 ORTHO05D005400 4.0e-06 56.2 117 34.2
Sc08g0005810 Simmondsia chinensis HOM05D012448 ORTHO05D011165 4.0e-06 56.2 81 32.1
Sopen10g031260 Solanum pennellii HOM05D003387 ORTHO05D005400 4.0e-06 56.2 79 45.6
THA.LOC104809206 Tarenaya hassleriana HOM05D003387 ORTHO05D005400 4.0e-06 56.2 99 40.4
CARHR035330 Cardamine hirsuta HOM05D003387 ORTHO05D005400 5.2e-06 55.8 99 37.4
ClCG08G002590 Citrullus lanatus HOM05D003387 ORTHO05D005400 5.2e-06 55.8 99 38.4
MELO3C024993.2 Cucumis melo HOM05D003387 ORTHO05D005400 5.2e-06 55.8 99 38.4
CsaV3_6G002770 Cucumis sativus L. HOM05D003387 ORTHO05D005400 5.2e-06 55.8 99 38.4
Migut.K00003 Erythranthe guttata HOM05D003387 ORTHO05D005400 5.2e-06 55.8 133 31.6
FvH4_2g13280 Fragaria vesca HOM05D003387 ORTHO05D005400 5.2e-06 55.8 117 33.3
FAN20G0358 Fragaria x ananassa HOM05D003387 ORTHO05D005400 5.2e-06 55.8 117 33.3
FAN24G3173 Fragaria x ananassa HOM05D003387 ORTHO05D005400 5.2e-06 55.8 117 33.3
MD04G1044700 Malus domestica HOM05D003387 ORTHO05D005400 5.2e-06 55.8 117 33.3
Mapoly0001s0481 Marchantia polymorpha HOM05D003387 ORTHO05D005400 5.2e-06 55.8 99 39.4
RcHm_v2.0_Chr6g0274691 Rosa chinensis HOM05D003387 ORTHO05D005400 5.2e-06 55.8 117 33.3
Sabra05G0148200 Salix brachista HOM05D003387 ORTHO05D005400 5.2e-06 55.8 113 33.6
Cc04_g09690 Coffea canephora HOM05D003387 ORTHO05D005400 6.8e-06 55.5 99 38.4
Medtr6g043520 Medicago truncatula HOM05D003387 ORTHO05D005400 6.8e-06 55.5 102 36.3
Hund26682 Selenicereus undatus HOM05D003387 ORTHO05D005400 6.8e-06 55.5 99 39.4
Sc22g0003270 Simmondsia chinensis HOM05D012448 ORTHO05D011165 6.8e-06 55.5 84 39.3
Peaxi162Scf00076g00821 Petunia axillaris HOM05D003387 ORTHO05D005400 8.9e-06 55.1 105 36.2
Sc09g0006480 Simmondsia chinensis HOM05D012448 ORTHO05D011165 8.9e-06 55.1 80 37.5
PGSC0003DMG400023660 Solanum tuberosum HOM05D003387 ORTHO05D005400 8.9e-06 55.1 79 45.6
Zm00001eb348540 Zea mays HOM05D003387 ORTHO05D005400 8.9e-06 55.1 102 36.3


User provided reference genes

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