Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 3237.2 1650 100.0
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 2323.9 1611 74.2
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 2322.4 1608 74.3
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 0.0e+00 2256.1 1712 70.3
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 0.0e+00 2216.4 1642 70.3
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 0.0e+00 2213.0 1593 71.1
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 0.0e+00 2209.9 1645 69.9
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 2204.5 1574 73.3
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 0.0e+00 2204.1 1607 70.7
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 0.0e+00 2154.8 1591 70.1
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 0.0e+00 2143.6 1617 69.1
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2136.3 1603 69.4
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 0.0e+00 2136.3 1599 70.2
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 0.0e+00 2136.3 1596 70.2
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 0.0e+00 2133.6 1636 68.9
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 0.0e+00 2124.7 1609 68.0
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 0.0e+00 2121.3 1629 68.0
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 0.0e+00 2119.4 1593 68.5
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 0.0e+00 2117.8 1594 68.8
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 2110.9 1650 66.7
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2106.6 1604 68.6
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 0.0e+00 2087.8 1672 65.0
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 0.0e+00 2087.8 1591 68.1
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 0.0e+00 2082.4 1646 67.4
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 0.0e+00 2072.0 1590 66.7
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 0.0e+00 2070.4 1600 67.1
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2065.8 1606 67.1
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 2065.4 1595 67.1
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 0.0e+00 2063.1 1497 70.9
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 0.0e+00 2051.9 1723 63.3
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2045.0 1605 66.7
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2040.8 1606 66.6
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 0.0e+00 2037.3 1605 66.8
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2037.3 1606 66.6
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 0.0e+00 2031.1 1612 65.7
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 2028.8 1598 66.6
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 0.0e+00 2028.4 1612 65.5
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 0.0e+00 2027.7 1646 65.4
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 2007.6 1600 65.6
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 2006.9 1583 66.0
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 0.0e+00 1989.5 1563 66.2
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 1986.5 1602 65.4
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 0.0e+00 1985.7 1630 64.0
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 0.0e+00 1984.5 1656 63.9
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 0.0e+00 1981.1 1666 62.8
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 0.0e+00 1981.1 1643 63.3
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 0.0e+00 1980.7 1667 63.7
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1974.9 1605 65.4
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 0.0e+00 1974.5 1562 65.3
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 0.0e+00 1969.5 1587 65.8
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 0.0e+00 1965.3 1653 62.7
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 0.0e+00 1963.3 1614 63.6
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 0.0e+00 1963.3 1650 62.7
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 1962.6 1595 64.4
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 0.0e+00 1957.2 1458 68.9
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 0.0e+00 1940.6 1629 62.9
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1940.6 1613 63.9
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 0.0e+00 1938.3 1614 63.1
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 0.0e+00 1937.5 1724 60.2
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 0.0e+00 1931.8 1643 62.2
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 0.0e+00 1929.8 1632 62.6
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 0.0e+00 1921.7 1678 60.6
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 0.0e+00 1921.0 1628 62.3
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 0.0e+00 1919.8 1575 64.4
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1914.0 1728 59.7
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 0.0e+00 1909.8 1629 62.1
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1909.4 1719 59.5
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1904.0 1716 59.7
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1902.5 1634 61.9
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1902.5 1634 61.9
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1900.2 1705 59.6
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1900.2 1705 59.6
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 0.0e+00 1899.0 1512 65.4
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1894.0 1728 59.3
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1890.2 1367 70.9
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 0.0e+00 1880.5 1639 60.9
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 0.0e+00 1864.7 1570 62.8
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 0.0e+00 1854.3 1611 61.7
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1853.6 1571 62.7
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 0.0e+00 1848.9 1672 61.0
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 0.0e+00 1830.5 1615 60.8
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 0.0e+00 1816.6 1390 67.8
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 0.0e+00 1815.4 1245 73.9
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 0.0e+00 1778.8 1491 63.6
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 0.0e+00 1767.7 1350 67.8
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 0.0e+00 1765.7 1604 59.5
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 0.0e+00 1713.0 1411 64.6
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 0.0e+00 1711.8 1538 59.9
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1694.1 1556 58.9
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1588.5 1576 55.6
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 0.0e+00 1585.9 1340 61.4
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1555.0 1437 58.2
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 1531.9 1120 69.7
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1503.8 1388 58.7
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 0.0e+00 1379.8 1614 48.0
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 0.0e+00 1315.4 1623 46.9
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 0.0e+00 1300.0 1574 47.1
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 0.0e+00 1271.1 1555 46.8
Oeu007060.1 Olea europaea HOM05D003939 ORTHO05D005979 0.0e+00 1241.1 1215 57.0
Glyma.19G029100 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 1223.8 988 65.1
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 0.0e+00 1181.4 806 76.1
SEGI_00927 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 0.0e+00 1105.9 1087 53.9
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 8.3e-281 971.5 777 65.5
CBR_g19320 Chara braunii HOM05D003939 ORTHO05D005979 7.0e-280 968.4 1335 42.5
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 3.3e-261 906.4 746 63.8
TAR371G1006 Trochodendron aralioides HOM05D003939 ORTHO05D005979 2.6e-258 896.7 797 59.2
CARHR197770 Cardamine hirsuta HOM05D003939 ORTHO05D005979 3.0e-254 883.2 642 68.5
CiPaw.03G089600 Carya illinoinensis HOM05D003939 ORTHO05D005979 2.6e-226 790.4 656 64.6
HPP92_012253 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.1e-205 721.8 883 47.5
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 1.6e-178 631.7 504 65.9
HPP92_012298 Vanilla planifolia HOM05D003939 ORTHO05D005979 3.2e-171 607.4 728 47.4
Cpa.g.sc2744.1 Carica papaya HOM05D003939 ORTHO05D005979 1.3e-153 548.9 437 62.2
DCAR_026524 Daucus carota HOM05D003939 ORTHO05D005979 9.6e-136 489.6 557 51.3
Gohir.1Z049344 Gossypium hirsutum HOM05D003939 ORTHO05D005979 3.7e-127 461.1 447 57.3
Glyma.19G029000 Glycine max HOM05D003939 ORTHO05D005979 6.2e-127 460.3 351 67.2
CSS0005126 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 5.5e-115 420.6 391 59.8
SEGI_06328 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 5.5e-115 420.6 380 57.9
HPP92_012254 Vanilla planifolia HOM05D003939 ORTHO05D005979 5.9e-101 374.0 332 59.9
PGSC0003DMG400012376 Solanum tuberosum HOM05D003939 ORTHO05D005979 8.5e-100 370.2 347 57.6
Cpa.g.sc14.167 Carica papaya HOM05D003939 ORTHO05D005979 8.8e-97 360.1 267 70.0
SEGI_04445 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 9.7e-96 356.7 282 62.4
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 6.3e-95 354.0 354 52.5
Prupe.2G279500 Prunus persica HOM05D003939 ORTHO05D005979 4.1e-94 351.3 414 49.5
CDE04G2810 Ceratophyllum demersum HOM05D003939 ORTHO05D005979 4.7e-90 337.8 287 63.1
CSS0039149 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 8.5e-84 317.0 361 51.0
Psat0s5863g0040 Pisum sativum HOM05D003939 ORTHO05D005979 5.5e-83 314.3 364 53.0
Cre06.g278269 Chlamydomonas reinhardtii HOM05D003939 ORTHO05D005979 1.0e-68 266.9 1434 23.6
ClCG07G007370 Citrullus lanatus HOM05D003939 ORTHO05D005979 3.4e-64 251.9 281 50.5
Hma1.2p1_0481F.1_g162010 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 8.9e-57 227.3 225 56.4
MCO01G540 Micromonas commoda HOM05D003939 ORTHO05D005979 1.3e-47 196.8 438 30.8
BolC9t58997H Brassica oleracea HOM05D003939 ORTHO05D005979 6.0e-45 188.0 120 71.7
Hma1.2p1_0481F.1_g162030 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 2.1e-42 179.5 221 48.0
Psat0s9359g0040 Pisum sativum HOM05D003939 ORTHO05D005979 2.3e-41 176.0 185 52.4
Lju41A4T72 Lonicera japonica HOM05D003939 ORTHO05D005979 2.4e-38 166.0 179 54.2
CAN.G61.23 Capsicum annuum HOM05D003939 ORTHO05D005979 2.4e-30 139.4 117 56.4
Psat5g278520 Pisum sativum HOM05D003939 ORTHO05D030477 1.2e-29 137.1 96 69.8
MBI06_g03947_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 3.3e-27 129.0 114 60.5
Psat3g154360 Pisum sativum HOM05D003939 ORTHO05D030477 7.3e-27 127.9 94 68.1
Glyma.01G130950 Glycine max HOM05D003939 ORTHO05D005979 1.6e-26 126.7 99 68.7
Cpa.g.c43937 Carica papaya HOM05D003939 ORTHO05D005979 2.1e-26 126.3 70 87.1
Psat3g154320 Pisum sativum HOM05D003939 ORTHO05D030477 4.8e-26 125.2 95 66.3
arahy.Tifrunner.gnm1.ann1.HI697U Arachis hypogaea HOM05D001278 ORTHO05D005979 2.2e-23 116.3 90 66.7
C09p61570 Brassica napus HOM05D003939 ORTHO05D005979 2.2e-23 116.3 79 65.8
MBI19_g03794_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 1.3e-20 107.1 207 39.6
MELO3C001621.2 Cucumis melo HOM05D003939 ORTHO05D005979 2.3e-20 106.3 78 66.7
MELO3C000805.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.5e-19 103.6 90 64.4
arahy.Tifrunner.gnm1.ann1.BV8AZF Arachis hypogaea HOM05D001278 ORTHO05D004786 3.3e-19 102.4 71 71.8
SEGI_31617 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 2.8e-18 99.4 252 31.0
Hma1.2p1_0481F.1_g162040 Hydrangea macrophylla HOM05D003939 ORTHO05D013368 2.4e-17 96.3 76 65.8
Atru.chr8.420 Acer truncatum HOM05D003939 ORTHO05D013368 4.0e-17 95.5 89 61.8
Nitab4.5_0002960g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 5.3e-17 95.1 73 63.0
Nitab4.5_0001637g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 6.9e-17 94.7 78 59.0
TAR376G0271 Trochodendron aralioides HOM05D003939 ORTHO05D009412 1.5e-16 93.6 107 50.5
C09p61560 Brassica napus HOM05D003939 ORTHO05D013368 2.6e-16 92.8 121 46.3
TAR376G0356 Trochodendron aralioides HOM05D003939 ORTHO05D009412 4.5e-16 92.0 107 49.5
TAR629G2192 Trochodendron aralioides HOM05D003939 ORTHO05D013368 1.7e-15 90.1 105 50.5
Solyc03g059400.1 Solanum lycopersicum HOM05D003939 ORTHO05D013368 3.8e-15 89.0 81 55.6
TAR629G0495 Trochodendron aralioides HOM05D003939 ORTHO05D005979 3.8e-15 89.0 59 72.9
HPP92_012255 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.9e-14 86.7 220 33.2
MELO3C001721.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.0e-12 80.9 61 65.6
SEGI_38119 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 2.5e-11 76.3 154 33.8
ATR0035G002 Amborella trichopoda HOM05D003939 ORTHO05D013368 9.6e-11 74.3 81 50.6
ATR0064G012 Amborella trichopoda HOM05D003939 ORTHO05D013368 9.6e-11 74.3 81 50.6
ATR1045G001 Amborella trichopoda HOM05D003939 ORTHO05D013368 9.6e-11 74.3 83 48.2
PSO063G0192 Papaver somniferum HOM05D001862 ORTHO05D005979 1.1e-09 70.9 93 41.9
Psat5g164760 Pisum sativum HOM05D003939 ORTHO05D005979 1.8e-09 70.1 53 66.0
BolC9t58995H Brassica oleracea HOM05D003939 ORTHO05D013368 1.5e-08 67.0 90 46.7
PSO013G0049 Papaver somniferum HOM05D003939 ORTHO05D013368 1.0e-07 64.3 65 47.7
MBI19_g32131_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 9.3e-06 57.8 55 50.9


User provided reference genes

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