Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0007220 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.2e-80 303.1 155 100.0
Sc15g0003120 Simmondsia chinensis HOM05D003387 ORTHO05D011165 4.2e-17 92.0 117 47.0
Sc04g0006840 Simmondsia chinensis HOM05D003387 ORTHO05D011165 2.7e-16 89.4 129 41.1
Sc17g0002610 Simmondsia chinensis HOM05D003387 ORTHO05D011165 4.6e-16 88.6 88 54.5
Sc25g0003800 Simmondsia chinensis HOM05D003387 ORTHO05D011165 7.9e-16 87.8 101 45.5
Sc26g0003450 Simmondsia chinensis HOM05D031019 ORTHO05D011165 1.1e-14 84.0 138 40.6
Sc21g0004200 Simmondsia chinensis HOM05D012448 ORTHO05D011165 4.3e-14 82.0 86 53.5
Sc07g0005580 Simmondsia chinensis HOM05D003387 ORTHO05D011165 8.2e-13 77.8 79 54.4
Sc16g0004730 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.1e-12 77.4 91 48.4
Sc09g0006000 Simmondsia chinensis HOM05D015224 ORTHO05D388293 2.4e-12 76.3 87 46.0
Sc02g0004440 Simmondsia chinensis HOM05D003387 ORTHO05D011165 4.1e-12 75.5 79 46.8
Sc07g0005590 Simmondsia chinensis HOM05D003387 ORTHO05D011165 5.3e-12 75.1 79 53.2
Sc20g0003080 Simmondsia chinensis HOM05D012448 ORTHO05D011165 6.9e-12 74.7 81 46.9
Sc13g0008890 Simmondsia chinensis HOM05D031019 ORTHO05D011165 1.2e-11 73.9 76 52.6
Sc22g0003270 Simmondsia chinensis HOM05D012448 ORTHO05D011165 2.6e-11 72.8 143 35.0
Sc07g0004700 Simmondsia chinensis HOM05D012448 ORTHO05D011165 3.4e-11 72.4 76 43.4
Sc22g0004350 Simmondsia chinensis HOM05D028099 ORTHO05D011165 3.4e-11 72.4 91 44.0
THA.LOC104809206 Tarenaya hassleriana HOM05D003387 ORTHO05D005400 3.4e-11 72.4 105 45.7
Sc11g0004550 Simmondsia chinensis HOM05D012448 ORTHO05D011165 4.5e-11 72.0 160 31.9
Aa31LG6G9950 Aethionema arabicum HOM05D003387 ORTHO05D005400 5.9e-11 71.6 105 43.8
AL1G51590 Arabidopsis lyrata HOM05D003387 ORTHO05D005400 5.9e-11 71.6 105 43.8
AT1G43190 Arabidopsis thaliana HOM05D003387 ORTHO05D005400 5.9e-11 71.6 105 43.8
Carub.0001s3449 Capsella rubella HOM05D003387 ORTHO05D005400 5.9e-11 71.6 105 43.8
CARHR035330 Cardamine hirsuta HOM05D003387 ORTHO05D005400 5.9e-11 71.6 105 42.9
BcaC07g37311 Brassica carinata HOM05D003387 ORTHO05D005400 7.7e-11 71.2 105 43.8
A08p06460 Brassica napus HOM05D003387 ORTHO05D005400 7.7e-11 71.2 105 43.8
C08p07450 Brassica napus HOM05D003387 ORTHO05D005400 7.7e-11 71.2 105 43.8
BolC8t47590H Brassica oleracea HOM05D003387 ORTHO05D005400 7.7e-11 71.2 105 43.8
BraA08t32655Z Brassica rapa HOM05D003387 ORTHO05D005400 7.7e-11 71.2 105 43.8
Thhalv10004261m.g Eutrema salsugineum HOM05D003387 ORTHO05D005400 1.0e-10 70.9 105 43.8
Sc12g0007970 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.0e-10 70.9 84 47.6
Sp1g32390 Schrenkiella parvula HOM05D003387 ORTHO05D005400 1.3e-10 70.5 105 42.9
Sc16g0004600 Simmondsia chinensis HOM05D008654 ORTHO05D011165 1.3e-10 70.5 83 47.0
Sc08g0005810 Simmondsia chinensis HOM05D012448 ORTHO05D011165 2.2e-10 69.7 144 34.0
Sed0017554 Sechium edule HOM05D003387 ORTHO05D005400 2.9e-10 69.3 104 43.3
BcaB04g17624 Brassica carinata HOM05D003387 ORTHO05D005400 3.8e-10 68.9 80 50.0
ClCG08G002590 Citrullus lanatus HOM05D003387 ORTHO05D005400 5.0e-10 68.6 80 50.0
MELO3C024993.2 Cucumis melo HOM05D003387 ORTHO05D005400 5.0e-10 68.6 80 50.0
CsaV3_6G002770 Cucumis sativus L. HOM05D003387 ORTHO05D005400 5.0e-10 68.6 80 50.0
Sc03g0005120 Simmondsia chinensis HOM05D015224 ORTHO05D011165 5.0e-10 68.6 77 50.6
Thecc.08G155500 Theobroma cacao HOM05D003387 ORTHO05D005400 5.0e-10 68.6 80 51.2
TPR.G17034 Trifolium pratense HOM05D003387 ORTHO05D005400 5.0e-10 68.6 104 43.3
Eucgr.F02695 Eucalyptus grandis HOM05D003387 ORTHO05D005400 6.5e-10 68.2 104 43.3
Eucgr.F04205 Eucalyptus grandis HOM05D003387 ORTHO05D005400 6.5e-10 68.2 104 42.3
Sc12g0007940 Simmondsia chinensis HOM05D012448 ORTHO05D011165 6.5e-10 68.2 137 32.1
Sc18g0004320 Simmondsia chinensis HOM05D031019 ORTHO05D011165 6.5e-10 68.2 76 47.4
Sopen10g031260 Solanum pennellii HOM05D003387 ORTHO05D005400 6.5e-10 68.2 104 43.3
CANSAT25G0465 Cannabis sativa HOM05D003387 ORTHO05D005400 8.5e-10 67.8 104 42.3
Prupe.8G036700 Prunus persica HOM05D003387 ORTHO05D005400 8.5e-10 67.8 104 42.3
THA.LOC104804671 Tarenaya hassleriana HOM05D003387 ORTHO05D005400 8.5e-10 67.8 105 42.9
Cfa002795 Carpinus fangiana HOM05D003387 ORTHO05D005400 1.1e-09 67.4 99 44.4
FvH4_2g13280 Fragaria vesca HOM05D003387 ORTHO05D005400 1.1e-09 67.4 104 41.3
FAN20G0358 Fragaria x ananassa HOM05D003387 ORTHO05D005400 1.1e-09 67.4 104 41.3
FAN24G3173 Fragaria x ananassa HOM05D003387 ORTHO05D005400 1.1e-09 67.4 104 41.3
MD04G1044700 Malus domestica HOM05D003387 ORTHO05D005400 1.1e-09 67.4 104 41.3
Manes.18G093400 Manihot esculenta HOM05D003387 ORTHO05D005400 1.1e-09 67.4 80 50.0
RcHm_v2.0_Chr6g0274691 Rosa chinensis HOM05D003387 ORTHO05D005400 1.1e-09 67.4 104 41.3
Solyc10g080720.2 Solanum lycopersicum HOM05D003387 ORTHO05D005400 1.1e-09 67.4 104 44.2
Ca_10675_v3 Cicer arietinum L. HOM05D003387 ORTHO05D005400 1.4e-09 67.0 80 50.0
Psat6g192160 Pisum sativum HOM05D003387 ORTHO05D005400 1.4e-09 67.0 80 50.0
Sc07g0005070 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.4e-09 67.0 136 32.4
PGSC0003DMG400023660 Solanum tuberosum HOM05D003387 ORTHO05D005400 1.4e-09 67.0 104 43.3
Gohir.A02G063500 Gossypium hirsutum HOM05D003387 ORTHO05D005400 1.9e-09 66.6 104 43.3
Gohir.D02G069100 Gossypium hirsutum HOM05D003387 ORTHO05D005400 1.9e-09 66.6 104 43.3
Gorai.005G078200 Gossypium raimondii HOM05D003387 ORTHO05D005400 1.9e-09 66.6 104 43.3
Dinv25885 Davidia involucrata HOM05D003387 ORTHO05D005400 2.5e-09 66.2 80 50.0
Sc04g0003810 Simmondsia chinensis HOM05D012448 ORTHO05D011165 2.5e-09 66.2 76 44.7
Sc16g0004050 Simmondsia chinensis HOM05D003387 ORTHO05D005400 2.5e-09 66.2 75 50.7
TWI34G1705 Tripterygium wilfordii HOM05D003387 ORTHO05D005400 2.5e-09 66.2 80 47.5
HPP92_002768 Vanilla planifolia HOM05D003387 ORTHO05D005400 2.5e-09 66.2 81 48.1
FAN15G3239 Fragaria x ananassa HOM05D003387 ORTHO05D005400 3.2e-09 65.9 104 40.4
Medtr1g098530 Medicago truncatula HOM05D003387 ORTHO05D005400 3.2e-09 65.9 80 48.8
PGSC0003DMG400018824 Solanum tuberosum HOM05D003387 ORTHO05D005400 3.2e-09 65.9 104 41.3
TWI60G0696 Tripterygium wilfordii HOM05D003387 ORTHO05D005400 3.2e-09 65.9 80 48.8
Ciclev10001148m.g Citrus clementina HOM05D003387 ORTHO05D005400 4.2e-09 65.5 104 42.3
Duzib093G0739 Durio zibethinus HOM05D003387 ORTHO05D005400 4.2e-09 65.5 80 50.0
Lalb_Chr02g0141481 Lupinus albus HOM05D003387 ORTHO05D005400 4.2e-09 65.5 75 49.3
Sc14g0005430 Simmondsia chinensis HOM05D012448 ORTHO05D011165 4.2e-09 65.5 124 31.5
Ah.05g168100 Amaranthus hybridus HOM05D003387 ORTHO05D005400 5.5e-09 65.1 100 43.0
CiPaw.16G009800 Carya illinoinensis HOM05D003387 ORTHO05D005400 5.5e-09 65.1 104 42.3
Lj5g0027187 Lotus japonicus HOM05D003387 ORTHO05D005400 5.5e-09 65.1 80 47.5
Nn5g28791 Nelumbo nucifera HOM05D003387 ORTHO05D005400 5.5e-09 65.1 75 52.0
Potri.002G066000 Populus trichocarpa HOM05D003387 ORTHO05D005400 5.5e-09 65.1 80 48.8
Sc03g0007670 Simmondsia chinensis HOM05D012448 ORTHO05D011165 5.5e-09 65.1 75 45.3
CSS0039159 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D005400 7.2e-09 64.7 80 50.0
CiPaw.15G014400 Carya illinoinensis HOM05D003387 ORTHO05D005400 7.2e-09 64.7 104 42.3
Haze_25093 Corylus avellana HOM05D003387 ORTHO05D005400 7.2e-09 64.7 99 43.4
Glyma.10G223300 Glycine max HOM05D003387 ORTHO05D005400 7.2e-09 64.7 80 46.2
Glyma.20G168400 Glycine max HOM05D003387 ORTHO05D005400 7.2e-09 64.7 80 46.2
Sed0013690 Sechium edule HOM05D003387 ORTHO05D005400 7.2e-09 64.7 80 47.5
VMungo0720G1662 Vigna mungo HOM05D003387 ORTHO05D005400 7.2e-09 64.7 80 47.5
GSVIVG01022282001 Vitis vinifera HOM05D003387 ORTHO05D005400 7.2e-09 64.7 75 50.7
EL10Ac6g15237 Beta vulgaris HOM05D003387 ORTHO05D005400 9.4e-09 64.3 75 46.7
CSS0049572 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D005400 9.4e-09 64.3 80 48.8
Cfa018305 Carpinus fangiana HOM05D003387 ORTHO05D005400 9.4e-09 64.3 104 41.3
Cc04_g09690 Coffea canephora HOM05D003387 ORTHO05D005400 9.4e-09 64.3 80 48.8
Sopen12g010100 Solanum pennellii HOM05D003387 ORTHO05D005400 9.4e-09 64.3 104 40.4
Atru.chr13.2064 Acer truncatum HOM05D003387 ORTHO05D005400 1.2e-08 63.9 104 41.3
ATR1126G056 Amborella trichopoda HOM05D003387 ORTHO05D005400 1.2e-08 63.9 118 37.3
arahy.Tifrunner.gnm1.ann1.LGJ4PH Arachis hypogaea HOM05D003387 ORTHO05D005400 1.2e-08 63.9 80 47.5
arahy.Tifrunner.gnm1.ann1.RF14FM Arachis hypogaea HOM05D003387 ORTHO05D005400 1.2e-08 63.9 80 47.5
Lj7C377G3 Lonicera japonica HOM05D003387 ORTHO05D005400 1.2e-08 63.9 80 47.5
Manes.02G181600 Manihot esculenta HOM05D003387 ORTHO05D005400 1.2e-08 63.9 80 48.8
PSO541G1407 Papaver somniferum HOM05D003387 ORTHO05D005400 1.2e-08 63.9 104 40.4
PSO675G7282 Papaver somniferum HOM05D003387 ORTHO05D005400 1.2e-08 63.9 104 40.4
Psat1g100400 Pisum sativum HOM05D003387 ORTHO05D005400 1.2e-08 63.9 80 46.2
QL02p037738 Quercus lobata HOM05D003387 ORTHO05D005400 1.2e-08 63.9 104 41.3
QL02p038708 Quercus lobata HOM05D003387 ORTHO05D005400 1.2e-08 63.9 104 41.3
Sc01g0004380 Simmondsia chinensis HOM05D031019 ORTHO05D011165 1.2e-08 63.9 75 46.7
arahy.Tifrunner.gnm1.ann1.9CFF48 Arachis hypogaea HOM05D003387 ORTHO05D005400 1.6e-08 63.5 80 47.5
arahy.Tifrunner.gnm1.ann1.K61U57 Arachis hypogaea HOM05D003387 ORTHO05D005400 1.6e-08 63.5 80 47.5
CBR_g7995 Chara braunii HOM05D003387 ORTHO05D005400 1.6e-08 63.5 75 50.7
Glyma.02G080500 Glycine max HOM05D003387 ORTHO05D005400 1.6e-08 63.5 80 46.2
Glyma.16G165000 Glycine max HOM05D003387 ORTHO05D005400 1.6e-08 63.5 80 46.2
Lalb_Chr06g0161681 Lupinus albus HOM05D003387 ORTHO05D005400 1.6e-08 63.5 80 46.2
Lalb_Chr21g0305541 Lupinus albus HOM05D003387 ORTHO05D005400 1.6e-08 63.5 80 46.2
Phvul.004G092400 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 1.6e-08 63.5 80 46.2
Hund19618 Selenicereus undatus HOM05D003387 ORTHO05D005400 1.6e-08 63.5 75 48.0
Sc26g0003240 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.6e-08 63.5 157 31.8
vmacro01482 Vaccinium macrocarpon HOM05D003387 ORTHO05D005400 1.6e-08 63.5 80 47.5
Actinidia10635 Actinidia chinensis HOM05D003387 ORTHO05D005400 2.1e-08 63.2 80 48.8
Phvul.007G081900 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 2.1e-08 63.2 80 45.0
Pp3c14_14100 Physcomitrium patens HOM05D003387 ORTHO05D005400 2.1e-08 63.2 75 49.3
QL06p031237 Quercus lobata HOM05D003387 ORTHO05D005400 2.1e-08 63.2 75 50.7
GSVIVG01034558001 Vitis vinifera HOM05D003387 ORTHO05D005400 2.1e-08 63.2 80 47.5
Aqoxy2G00397 Aquilegia oxysepala HOM05D003387 ORTHO05D005400 2.7e-08 62.8 75 49.3
CiPaw.04G088200 Carya illinoinensis HOM05D003387 ORTHO05D005400 2.7e-08 62.8 75 49.3
DCAR_014445 Daucus carota HOM05D003387 ORTHO05D005400 2.7e-08 62.8 80 46.2
HanXRQChr05g0144181 Helianthus annuus HOM05D003387 ORTHO05D005400 2.7e-08 62.8 80 47.5
Nn1g06041 Nelumbo nucifera HOM05D003387 ORTHO05D005400 2.7e-08 62.8 75 50.7
Pp3c14_17110 Physcomitrium patens HOM05D003387 ORTHO05D005400 2.7e-08 62.8 75 49.3
TAR628G0869 Trochodendron aralioides HOM05D003387 ORTHO05D005400 2.7e-08 62.8 75 50.7
Ca_04511_v3 Cicer arietinum L. HOM05D003387 ORTHO05D005400 3.6e-08 62.4 104 39.4
Duzib116G0668 Durio zibethinus HOM05D003387 ORTHO05D005400 3.6e-08 62.4 80 48.8
Migut.K00003 Erythranthe guttata HOM05D003387 ORTHO05D005400 3.6e-08 62.4 80 46.2
Lsat_1_v5_gn_9_41940 Lactuca sativa HOM05D003387 ORTHO05D005400 3.6e-08 62.4 80 47.5
PGR042G1308 Punica granatum HOM05D003387 ORTHO05D005400 3.6e-08 62.4 80 46.2
SGA_v2.0_scaffold274G46519 Striga asiatica HOM05D003387 ORTHO05D005400 3.6e-08 62.4 75 50.7
TAR376G0277 Trochodendron aralioides HOM05D003387 ORTHO05D005400 3.6e-08 62.4 75 50.7
VMungo0464G0875 Vigna mungo HOM05D003387 ORTHO05D005400 3.6e-08 62.4 80 45.0
Mapoly0001s0481 Marchantia polymorpha HOM05D003387 ORTHO05D005400 4.6e-08 62.0 75 49.3
Lalb_Chr19g0130201 Lupinus albus HOM05D003387 ORTHO05D005400 6.1e-08 61.6 80 45.0
Medtr6g043520 Medicago truncatula HOM05D003387 ORTHO05D005400 6.1e-08 61.6 80 45.0
SEGI_27673 Sequoiadendron giganteum HOM05D003387 ORTHO05D005400 6.1e-08 61.6 75 48.0
ECA232G0053 Erigeron canadensis HOM05D003387 ORTHO05D005400 7.9e-08 61.2 80 45.0
Potri.005G194700 Populus trichocarpa HOM05D003387 ORTHO05D005400 7.9e-08 61.2 80 45.0
SalBow1G1267 Salvia bowleyana HOM05D003387 ORTHO05D005400 7.9e-08 61.2 75 49.3
Sc18g0004540 Simmondsia chinensis HOM05D012448 ORTHO05D011165 7.9e-08 61.2 84 39.3
Ah.02g123810 Amaranthus hybridus HOM05D003387 ORTHO05D005400 1.0e-07 60.8 75 45.3
MBI16_g07738_MAGBIO Magnolia biondii HOM05D003387 ORTHO05D005400 1.0e-07 60.8 108 38.0
Peaxi162Scf00076g00821 Petunia axillaris HOM05D003387 ORTHO05D005400 1.0e-07 60.8 80 45.0
Sc21g0003950 Simmondsia chinensis HOM05D015224 ORTHO05D011165 1.0e-07 60.8 78 48.7
AagrBONN_evm.TU.Sc2ySwM_368.3328 Anthoceros agrestis HOM05D003387 ORTHO05D005400 1.4e-07 60.5 75 49.3
ATR0115G003 Amborella trichopoda HOM05D003387 ORTHO05D005400 2.3e-07 59.7 99 40.4
Sc12g0007750 Simmondsia chinensis HOM05D015224 ORTHO05D011165 2.3e-07 59.7 78 47.4
PSO700G0143 Papaver somniferum HOM05D003387 ORTHO05D005400 3.0e-07 59.3 80 46.2
Sabra02G0052700 Salix brachista HOM05D003387 ORTHO05D005400 3.9e-07 58.9 80 46.2
TPR.G28008 Trifolium pratense HOM05D003387 ORTHO05D005400 3.9e-07 58.9 80 43.8
Os01g0867800 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D005400 5.1e-07 58.5 80 45.0
Sabra05G0148200 Salix brachista HOM05D003387 ORTHO05D005400 5.1e-07 58.5 75 48.0
Medtr6g037550 Medicago truncatula HOM05D003387 ORTHO05D005400 6.7e-07 58.2 80 45.0
SMO146G0032 Selaginella moellendorffii HOM05D003387 ORTHO05D005400 6.7e-07 58.2 75 48.0
Hund26682 Selenicereus undatus HOM05D003387 ORTHO05D005400 6.7e-07 58.2 105 39.0
Zm00001eb348540 Zea mays HOM05D003387 ORTHO05D005400 8.8e-07 57.8 80 42.5
Sc09g0006480 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.1e-06 57.4 137 32.1
Lj2g0008478 Lotus japonicus HOM05D003387 ORTHO05D005400 2.0e-06 56.6 80 43.8
Zm00001eb289150 Zea mays HOM05D003387 ORTHO05D005400 2.0e-06 56.6 80 42.5
CDE06G0083 Ceratophyllum demersum HOM05D003387 ORTHO05D005400 4.3e-06 55.5 75 45.3
Sc11g0003900 Simmondsia chinensis HOM05D015224 ORTHO05D011165 4.3e-06 55.5 82 43.9
PSO170G1597 Papaver somniferum HOM05D003387 ORTHO05D005400 7.4e-06 54.7 102 37.3
SMO146G0120 Selaginella moellendorffii HOM05D003387 ORTHO05D002201 7.4e-06 54.7 83 39.8


User provided reference genes

Program Settings