Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 2.1e-85 319.3 204 100.0
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 2.0e-75 286.2 204 84.8
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 2.0e-75 286.2 204 84.8
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 4.4e-75 285.0 204 84.3
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 4.4e-75 285.0 204 89.7
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 1.3e-74 283.5 204 82.8
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 1.7e-74 283.1 204 83.3
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 1.7e-74 283.1 204 83.3
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 1.7e-74 283.1 201 90.5
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 1.7e-74 283.1 205 84.4
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 1.1e-73 280.4 204 82.4
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 1.1e-73 280.4 204 82.8
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 1.4e-73 280.0 204 82.4
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 1.9e-73 279.6 205 83.9
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 3.2e-73 278.9 200 90.0
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 3.2e-73 278.9 201 88.6
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 3.2e-73 278.9 204 85.3
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 9.3e-73 277.3 204 87.3
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 9.3e-73 277.3 204 87.3
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 9.3e-73 277.3 204 80.9
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 1.2e-72 276.9 203 84.7
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 2.7e-72 275.8 204 84.3
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 3.5e-72 275.4 203 87.2
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 4.6e-72 275.0 200 88.5
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 4.6e-72 275.0 200 88.5
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 7.8e-72 274.2 199 83.4
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 1.3e-71 273.5 204 84.8
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 1.3e-71 273.5 205 82.0
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 1.7e-71 273.1 200 88.0
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 1.7e-71 273.1 204 83.3
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 1.7e-71 273.1 203 85.7
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 2.3e-71 272.7 204 85.8
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 2.3e-71 272.7 204 78.9
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 3.0e-71 272.3 203 83.7
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 3.0e-71 272.3 201 83.1
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 8.7e-71 270.8 205 87.3
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 1.1e-70 270.4 204 79.9
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 1.9e-70 269.6 205 80.0
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 3.3e-70 268.9 201 88.1
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 5.6e-70 268.1 202 78.2
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 7.3e-70 267.7 205 80.5
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 7.3e-70 267.7 205 79.5
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 1.3e-69 266.9 204 82.4
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 1.6e-69 266.5 195 91.3
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 1.6e-69 266.5 206 85.9
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 1.6e-69 266.5 196 81.6
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 1.6e-69 266.5 200 86.5
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 1.6e-69 266.5 196 85.2
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 2.8e-69 265.8 200 88.5
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 2.8e-69 265.8 199 87.9
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 2.8e-69 265.8 199 87.4
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 2.8e-69 265.8 204 83.3
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 3.6e-69 265.4 204 77.9
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 3.6e-69 265.4 204 77.9
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 4.8e-69 265.0 201 87.6
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 6.2e-69 264.6 204 78.9
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 8.1e-69 264.2 204 77.5
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 4.0e-68 261.9 200 82.0
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 1.2e-67 260.4 199 78.4
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 1.2e-67 260.4 200 83.5
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 1.5e-67 260.0 201 80.1
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 2.6e-67 259.2 201 74.6
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 1.3e-66 256.9 205 79.0
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 2.9e-66 255.8 200 84.0
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 2.9e-66 255.8 198 82.8
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 6.4e-66 254.6 200 80.5
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 8.4e-66 254.2 204 77.0
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 8.4e-66 254.2 200 78.0
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 1.1e-65 253.8 205 78.5
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 1.1e-65 253.8 205 77.6
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 1.4e-65 253.4 200 80.5
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 1.9e-65 253.1 197 80.2
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 2.4e-65 252.7 200 79.0
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 2.4e-65 252.7 200 86.5
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 3.2e-65 252.3 153 90.2
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 3.2e-65 252.3 200 78.5
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 5.4e-65 251.5 196 79.6
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 7.1e-65 251.1 200 79.5
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 7.1e-65 251.1 205 79.5
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 1.6e-64 250.0 200 74.5
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 1.6e-64 250.0 205 79.0
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 2.7e-64 249.2 200 79.5
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 4.6e-64 248.4 198 73.2
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 4.6e-64 248.4 207 74.9
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 4.6e-64 248.4 200 82.0
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 4.6e-64 248.4 200 82.0
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 6.0e-64 248.1 200 73.0
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 7.9e-64 247.7 204 74.5
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 1.0e-63 247.3 247 65.6
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 1.3e-63 246.9 201 76.6
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 1.3e-63 246.9 205 72.7
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 3.0e-63 245.7 206 76.7
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 3.9e-63 245.4 201 76.1
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 3.9e-63 245.4 206 76.7
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 8.7e-63 244.2 206 76.2
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 3.6e-61 238.8 199 72.9
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 8.1e-61 237.7 204 77.9
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 1.1e-60 237.3 195 82.1
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 5.3e-60 235.0 198 82.3
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 4.5e-59 231.9 204 71.1
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.3e-58 230.3 160 88.8
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 1.3e-58 230.3 160 88.1
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.3e-58 230.3 155 76.8
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 1.3e-58 230.3 202 74.3
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 2.2e-58 229.6 211 59.2
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 7.1e-57 224.6 197 70.1
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 2.7e-56 222.6 296 58.1
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 1.8e-55 219.9 275 54.9
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 1.3e-53 213.8 204 69.1
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 4.0e-52 208.8 196 71.4
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 2.0e-51 206.5 149 69.8
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 2.5e-49 199.5 145 69.0
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 9.3e-49 197.6 224 71.0
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 1.6e-48 196.8 141 72.3
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 2.1e-48 196.4 207 56.0
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 2.1e-48 196.4 204 59.8
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 2.7e-48 196.1 203 61.6
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 2.3e-47 193.0 106 87.7
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 9.0e-44 181.0 150 78.7
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 7.2e-41 171.4 146 65.1
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 1.8e-39 166.8 224 51.8
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 8.2e-37 157.9 123 82.1
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 1.1e-36 157.5 141 60.3
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 2.6e-35 152.9 285 52.3
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 4.5e-35 152.1 126 65.9
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 5.0e-34 148.7 212 59.0
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 1.9e-33 146.7 228 50.9
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 1.0e-31 141.0 203 47.8
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 2.6e-22 109.8 213 42.3
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 4.8e-21 105.5 155 43.2
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 2.1e-16 90.1 96 70.8
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 6.1e-16 88.6 214 36.0
Zm00001eb114570 Zea mays HOM05D005935 ORTHO05D007012 1.5e-14 84.0 91 71.4
Zm00001eb180860 Zea mays HOM05D005935 ORTHO05D007012 7.7e-11 71.6 46 73.9
Cfa024511 Carpinus fangiana HOM05D005935 ORTHO05D007012 1.0e-07 61.2 162 26.5


User provided reference genes

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