Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc08g0008600 Simmondsia chinensis HOM05D006688 ORTHO05D008550 8.0e-216 753.4 369 100.0
Dinv42341 Davidia involucrata HOM05D006688 ORTHO05D008550 1.6e-160 569.7 365 73.7
EL10Ac8g19177 Beta vulgaris HOM05D006688 ORTHO05D008550 3.6e-160 568.5 374 73.3
AUR62029033 Chenopodium quinoa HOM05D006688 ORTHO05D008550 5.4e-156 554.7 373 72.1
Thecc.09G085200 Theobroma cacao HOM05D006688 ORTHO05D008550 9.3e-156 553.9 363 74.1
Gohir.D06G072500 Gossypium hirsutum HOM05D006688 ORTHO05D008550 3.9e-154 548.5 365 72.6
Hund06662 Selenicereus undatus HOM05D006688 ORTHO05D008550 3.9e-154 548.5 376 69.7
Gorai.010G084500 Gossypium raimondii HOM05D006688 ORTHO05D008550 1.1e-153 547.0 365 72.6
Ah.09g228060 Amaranthus hybridus HOM05D006688 ORTHO05D008550 4.3e-153 545.0 378 68.5
GSVIVG01015172001 Vitis vinifera HOM05D006688 ORTHO05D008550 2.8e-152 542.3 367 70.6
Haze_25940 Corylus avellana HOM05D006688 ORTHO05D008550 3.1e-151 538.9 368 69.8
Gohir.A06G073600 Gossypium hirsutum HOM05D006688 ORTHO05D008550 6.9e-151 537.7 365 71.5
Atru.chr7.1629 Acer truncatum HOM05D006688 ORTHO05D008550 1.2e-150 537.0 369 70.5
CSS0016517 Camellia sinensis var. sinensis HOM05D006688 ORTHO05D008550 2.0e-150 536.2 370 69.2
TAR636G2732 Trochodendron aralioides HOM05D006688 ORTHO05D008550 5.8e-150 534.6 372 69.9
FvH4_1g07921 Fragaria vesca HOM05D006688 ORTHO05D008550 2.9e-149 532.3 367 70.6
RcHm_v2.0_Chr2g0093801 Rosa chinensis HOM05D006688 ORTHO05D008550 4.2e-148 528.5 368 69.6
Lj7C679G14 Lonicera japonica HOM05D006688 ORTHO05D008550 9.3e-148 527.3 370 68.1
FAN26G0248 Fragaria x ananassa HOM05D006688 ORTHO05D008550 2.1e-147 526.2 367 69.8
COL.COLO4_18173 Corchorus olitorius HOM05D006688 ORTHO05D008550 4.6e-147 525.0 363 69.4
Hma1.2p1_0672F.1_g201000 Hydrangea macrophylla HOM05D006688 ORTHO05D008550 1.0e-146 523.9 368 68.8
FAN19G1103 Fragaria x ananassa HOM05D006688 ORTHO05D008550 1.8e-146 523.1 363 70.2
MD02G1082800 Malus domestica HOM05D006688 ORTHO05D008550 1.8e-146 523.1 371 67.4
FAN28G0979 Fragaria x ananassa HOM05D006688 ORTHO05D008550 2.3e-146 522.7 367 69.2
QL02p062093 Quercus lobata HOM05D006688 ORTHO05D008550 3.3e-145 518.8 392 64.8
Manes.03G036200 Manihot esculenta HOM05D006688 ORTHO05D008550 4.3e-145 518.5 365 67.9
CiPaw.03G212300 Carya illinoinensis HOM05D006688 ORTHO05D008550 7.4e-145 517.7 369 66.4
Cc06_g11640 Coffea canephora HOM05D006688 ORTHO05D008550 4.8e-144 515.0 372 66.4
CsaV3_1G040620 Cucumis sativus L. HOM05D006688 ORTHO05D008550 2.6e-142 509.2 367 65.9
arahy.Tifrunner.gnm1.ann1.UP5FVB Arachis hypogaea HOM05D006688 ORTHO05D008550 5.8e-142 508.1 368 66.3
Rhsim03G0231200 Rhododendron simsii HOM05D006688 ORTHO05D008550 5.8e-142 508.1 363 67.2
Aqoxy7G01159 Aquilegia oxysepala HOM05D006688 ORTHO05D008550 1.3e-141 506.9 373 66.2
MELO3C015492.2 Cucumis melo HOM05D006688 ORTHO05D008550 1.3e-141 506.9 367 65.4
vmacro06303 Vaccinium macrocarpon HOM05D006688 ORTHO05D008550 8.4e-141 504.2 364 67.6
arahy.Tifrunner.gnm1.ann1.XSA7KG Arachis hypogaea HOM05D006688 ORTHO05D008550 1.4e-140 503.4 372 65.3
Glyma.13G106300 Glycine max HOM05D006688 ORTHO05D008550 2.5e-140 502.7 371 64.4
Glyma.17G053100 Glycine max HOM05D006688 ORTHO05D008550 2.5e-140 502.7 369 65.0
PGR004G0903 Punica granatum HOM05D006688 ORTHO05D008550 9.3e-140 500.7 369 64.5
ECA232G4161 Erigeron canadensis HOM05D006688 ORTHO05D008550 1.2e-139 500.4 371 65.5
Potri.007G001500 Populus trichocarpa HOM05D006688 ORTHO05D008550 2.1e-139 499.6 365 65.2
Sed0022183 Sechium edule HOM05D006688 ORTHO05D008550 3.9e-138 495.4 367 63.5
Lj4g0022709 Lotus japonicus HOM05D006688 ORTHO05D008550 5.1e-138 495.0 368 64.4
Duzib150G1545 Durio zibethinus HOM05D006688 ORTHO05D000625 4.3e-137 491.9 338 70.7
arahy.Tifrunner.gnm1.ann1.LNAK8N Arachis hypogaea HOM05D006688 ORTHO05D008550 5.6e-137 491.5 358 66.2
MSTRG.10542 Avicennia marina HOM05D006688 ORTHO05D008550 1.3e-136 490.3 368 65.8
Cfa003056 Carpinus fangiana HOM05D006688 ORTHO05D000625 1.6e-136 490.0 340 68.8
Phvul.003G134700 Phaseolus vulgaris HOM05D006688 ORTHO05D008550 2.1e-136 489.6 368 64.1
Nitab4.5_0001519g0100 Nicotiana tabacum HOM05D006688 ORTHO05D008550 3.7e-136 488.8 367 65.1
Sopen07g019540 Solanum pennellii HOM05D006688 ORTHO05D008550 1.8e-135 486.5 367 63.8
VMungo1215G1360 Vigna mungo HOM05D006688 ORTHO05D008550 1.5e-134 483.4 368 63.3
Oeu000312.2 Olea europaea HOM05D006688 ORTHO05D008550 1.0e-133 480.7 410 60.0
DCAR_010507 Daucus carota HOM05D006688 ORTHO05D008550 2.2e-133 479.6 365 63.6
PSO063G5109 Papaver somniferum HOM05D006688 ORTHO05D008550 4.9e-133 478.4 375 61.9
PSO782G0729 Papaver somniferum HOM05D006688 ORTHO05D008550 6.5e-133 478.0 375 62.1
Sabra07G0001100 Salix brachista HOM05D006688 ORTHO05D008550 3.2e-132 475.7 406 59.1
TPR.G9451 Trifolium pratense HOM05D006688 ORTHO05D008550 4.2e-132 475.3 380 59.2
Medtr4g125950 Medicago truncatula HOM05D006688 ORTHO05D008550 1.2e-131 473.8 374 60.4
Migut.L01521 Erythranthe guttata HOM05D006688 ORTHO05D008550 1.3e-130 470.3 368 62.8
Thhalv10022744m.g Eutrema salsugineum HOM05D006688 ORTHO05D008550 2.3e-130 469.5 367 62.4
Peaxi162Scf00494g00088 Petunia axillaris HOM05D006688 ORTHO05D008550 5.1e-130 468.4 367 64.6
AUR62033933 Chenopodium quinoa HOM05D006688 ORTHO05D008550 1.1e-129 467.2 402 60.4
Lalb_Chr20g0118781 Lupinus albus HOM05D006688 ORTHO05D008550 1.1e-129 467.2 365 60.5
Nitab4.5_0003606g0020 Nicotiana tabacum HOM05D006688 ORTHO05D008550 1.9e-129 466.5 358 64.5
BcaC06g36575 Brassica carinata HOM05D006688 ORTHO05D008550 6.3e-128 461.5 366 62.3
C07p02720 Brassica napus HOM05D006688 ORTHO05D008550 1.8e-127 459.9 366 62.0
BolC7t40672H Brassica oleracea HOM05D006688 ORTHO05D008550 2.4e-127 459.5 366 62.0
AL3G48850 Arabidopsis lyrata HOM05D006688 ORTHO05D008550 4.1e-127 458.8 367 61.6
Carub.0003s3371 Capsella rubella HOM05D006688 ORTHO05D008550 4.1e-127 458.8 364 61.3
ClCG03G015420 Citrullus lanatus HOM05D006688 ORTHO05D008550 6.9e-127 458.0 349 63.6
Aa31LG8G16440 Aethionema arabicum HOM05D006688 ORTHO05D008550 9.0e-127 457.6 362 61.3
MBI04_g35655_MAGBIO Magnolia biondii HOM05D006688 ORTHO05D008550 1.5e-126 456.8 372 62.1
AT2G19430 Arabidopsis thaliana HOM05D006688 ORTHO05D008550 4.5e-126 455.3 367 60.5
Prupe.7G205900 Prunus persica HOM05D006688 ORTHO05D008550 5.9e-126 454.9 292 70.9
BraA07t27924Z Brassica rapa HOM05D006688 ORTHO05D008550 1.3e-125 453.8 362 62.2
SalBow1G2294 Salvia bowleyana HOM05D006688 ORTHO05D008550 3.8e-125 452.2 398 57.8
CARHR109870 Cardamine hirsuta HOM05D006688 ORTHO05D008550 5.0e-125 451.8 367 60.5
BcaB03g16729 Brassica carinata HOM05D006688 ORTHO05D008550 1.4e-124 450.3 366 61.2
TWI32G0460 Tripterygium wilfordii HOM05D006688 ORTHO05D008550 1.9e-124 449.9 376 59.6
FAN26G2887 Fragaria x ananassa HOM05D006688 ORTHO05D008550 4.2e-124 448.7 290 72.4
unitig_578.g16412 Utricularia gibba HOM05D006688 ORTHO05D008550 7.2e-124 448.0 368 59.0
A07p01330 Brassica napus HOM05D006688 ORTHO05D008550 9.4e-124 447.6 362 61.9
Lsat_1_v5_gn_5_143161 Lactuca sativa HOM05D006688 ORTHO05D008550 1.6e-123 446.8 368 60.6
SGA_v2.0_scaffold23G10037 Striga asiatica HOM05D006688 ORTHO05D008550 2.7e-123 446.0 400 56.8
Eucgr.C03417 Eucalyptus grandis HOM05D006688 ORTHO05D008550 8.8e-122 441.0 365 61.4
THA.LOC104814631 Tarenaya hassleriana HOM05D006688 ORTHO05D008550 2.5e-121 439.5 367 60.2
MBI04_g12191_MAGBIO Magnolia biondii HOM05D006688 ORTHO05D008550 9.7e-121 437.6 349 62.8
FAN23G3127 Fragaria x ananassa HOM05D006688 ORTHO05D008550 4.1e-119 432.2 367 61.3
Sp3g32810 Schrenkiella parvula HOM05D006688 ORTHO05D008550 3.4e-118 429.1 367 57.8
Ca_21292_v3 Cicer arietinum L. HOM05D006688 ORTHO05D008550 1.3e-117 427.2 377 56.2
Nn8g38791 Nelumbo nucifera HOM05D006688 ORTHO05D008550 5.0e-117 425.2 378 56.6
HanXRQChr10g0319491 Helianthus annuus HOM05D006688 ORTHO05D008550 1.2e-110 404.1 369 58.5
CDE04G2495 Ceratophyllum demersum HOM05D006688 ORTHO05D008550 7.2e-108 394.8 345 58.8
HPP92_007651 Vanilla planifolia HOM05D006688 ORTHO05D008550 5.2e-106 388.7 309 57.9
Zm00001eb310980 Zea mays HOM05D006688 ORTHO05D008550 4.4e-105 385.6 370 52.2
MD15G1210900 Malus domestica HOM05D006688 ORTHO05D008550 7.0e-103 378.3 388 52.1
Actinidia38457 Actinidia chinensis HOM05D006688 ORTHO05D008550 9.1e-103 377.9 364 55.8
Psat7g043880 Pisum sativum HOM05D006688 ORTHO05D008550 2.6e-102 376.3 313 56.9
ATR0789G107 Amborella trichopoda HOM05D006688 ORTHO05D008550 1.1e-95 354.4 353 52.7
Mapoly0100s0025 Marchantia polymorpha HOM05D006688 ORTHO05D008550 1.5e-84 317.4 377 45.9
CANSAT56G4018 Cannabis sativa HOM05D006688 ORTHO05D008550 5.0e-77 292.4 213 62.4
Ciclev10009613m.g Citrus clementina HOM05D006688 ORTHO05D008550 6.1e-75 285.4 187 73.8
Os09g0363600 Oryza sativa ssp. japonica HOM05D006688 ORTHO05D008550 1.3e-64 251.1 266 49.2
Lj7A540G53 Lonicera japonica HOM05D006688 ORTHO05D008550 1.9e-55 220.7 174 62.6
Cpa.g.sc28.142 Carica papaya HOM05D006688 ORTHO05D008550 2.6e-49 200.3 154 61.7
Ciclev10009794m.g Citrus clementina HOM05D006688 ORTHO05D008550 1.5e-44 184.5 147 59.2
MCO14G146 Micromonas commoda HOM05D006688 ORTHO05D008550 5.3e-42 176.0 367 31.6
Cpa.g.sc28.145 Carica papaya HOM05D006688 ORTHO05D008550 2.6e-41 173.7 131 64.1
Solyc07g040780.4 Solanum lycopersicum HOM05D006688 ORTHO05D008550 1.5e-28 131.3 142 47.2
SEGI_08677 Sequoiadendron giganteum HOM05D006688 ORTHO05D008550 1.5e-25 121.3 144 47.2
arahy.Tifrunner.gnm1.ann1.LK4K8I Arachis hypogaea HOM05D006688 ORTHO05D008550 1.9e-23 114.4 85 61.2
arahy.Tifrunner.gnm1.ann1.B17F7K Arachis hypogaea HOM05D006688 ORTHO05D008550 4.2e-23 113.2 68 69.1
Cre03.g180200 Chlamydomonas reinhardtii HOM05D006688 ORTHO05D008550 3.0e-21 107.1 428 26.9
Duzib168G0254 Durio zibethinus HOM05D006688 ORTHO05D008550 3.3e-20 103.6 64 78.1
Thhalv10023917m.g Eutrema salsugineum HOM05D006688 ORTHO05D008550 5.8e-17 92.8 116 44.0
SEGI_12408 Sequoiadendron giganteum HOM05D006688 ORTHO05D008550 1.4e-15 88.2 95 48.4
BcaB07g31609 Brassica carinata HOM05D006688 ORTHO05D008550 6.5e-08 62.8 113 42.5
COL.COLO4_27080 Corchorus olitorius HOM05D006688 ORTHO05D008550 6.5e-08 62.8 68 54.4
Sp1g35950 Schrenkiella parvula HOM05D003769 ORTHO05D004521 6.5e-08 62.8 155 28.4
BcaC07g41105 Brassica carinata HOM05D004736 ORTHO05D006424 1.4e-07 61.6 157 24.8
C08p41070 Brassica napus HOM05D004736 ORTHO05D006424 2.5e-07 60.8 157 24.8
BolC8t51671H Brassica oleracea HOM05D004736 ORTHO05D006424 2.5e-07 60.8 157 24.8
AL1G55920 Arabidopsis lyrata HOM05D003769 ORTHO05D004521 5.5e-07 59.7 155 27.7
AT1G49040 Arabidopsis thaliana HOM05D003769 ORTHO05D004521 5.5e-07 59.7 155 27.7
BcaB04g17498 Brassica carinata HOM05D003769 ORTHO05D004521 5.5e-07 59.7 155 27.7
BcaC08g43116 Brassica carinata HOM05D003769 ORTHO05D004521 5.5e-07 59.7 155 27.7
C06p03880 Brassica napus HOM05D003769 ORTHO05D004521 5.5e-07 59.7 155 27.7
C09p59210 Brassica napus HOM05D023048 ORTHO05D024144 5.5e-07 59.7 46 54.3
BolC6t35520H Brassica oleracea HOM05D003769 ORTHO05D004521 5.5e-07 59.7 155 27.7
BraA06t23606Z Brassica rapa HOM05D003769 ORTHO05D004521 5.5e-07 59.7 155 27.7
Carub.0001s3822 Capsella rubella HOM05D003769 ORTHO05D004521 5.5e-07 59.7 155 27.7
A06p03980 Brassica napus HOM05D003769 ORTHO05D004521 9.4e-07 58.9 155 27.1
BolC3t12720H Brassica oleracea HOM05D023048 ORTHO05D024144 9.4e-07 58.9 48 54.2
Aa31LG10G4900 Aethionema arabicum HOM05D003769 ORTHO05D004521 1.2e-06 58.5 155 27.1
BcaC01g06150 Brassica carinata HOM05D001335 ORTHO05D001184 1.2e-06 58.5 133 28.6
BcaC05g24809 Brassica carinata HOM05D023048 ORTHO05D024144 1.2e-06 58.5 46 54.3
C03p18740 Brassica napus HOM05D001335 ORTHO05D001184 1.2e-06 58.5 133 28.6
C05p08270 Brassica napus HOM05D023048 ORTHO05D024144 1.2e-06 58.5 46 54.3
BolC3t14265H Brassica oleracea HOM05D001335 ORTHO05D001184 1.2e-06 58.5 133 28.6
Zm00001eb160220 Zea mays HOM05D003769 ORTHO05D004521 1.2e-06 58.5 146 28.8
Peaxi162Scf00883g00035 Petunia axillaris HOM05D005323 ORTHO05D006820 1.6e-06 58.2 162 24.7
A09p57830 Brassica napus HOM05D004736 ORTHO05D006424 2.7e-06 57.4 157 24.2
Lj4g0007480 Lotus japonicus HOM05D003769 ORTHO05D004521 2.7e-06 57.4 174 27.6
Eucgr.I01264 Eucalyptus grandis HOM05D003825 ORTHO05D004491 4.6e-06 56.6 264 24.6
Pp3c26_9700 Physcomitrium patens HOM05D003769 ORTHO05D004521 4.6e-06 56.6 155 27.1
Thecc.01G155400 Theobroma cacao HOM05D001335 ORTHO05D001184 4.6e-06 56.6 193 26.4
Zm00001eb052290 Zea mays HOM05D003825 ORTHO05D004491 4.6e-06 56.6 102 32.4
Psat7g009720 Pisum sativum HOM05D003769 ORTHO05D004521 6.1e-06 56.2 155 27.7
BcaB08g35553 Brassica carinata HOM05D001335 ORTHO05D001184 7.9e-06 55.8 103 31.1
DCAR_027817 Daucus carota HOM05D003769 ORTHO05D004521 7.9e-06 55.8 229 24.0
Lalb_Chr05g0222571 Lupinus albus HOM05D003769 ORTHO05D004521 7.9e-06 55.8 174 27.6
Medtr8g104010 Medicago truncatula HOM05D003769 ORTHO05D004521 7.9e-06 55.8 174 27.6


User provided reference genes

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