Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0001540 Simmondsia chinensis HOM05D005238 ORTHO05D006337 8.6e-62 241.5 311 100.0
Prupe.4G139800 Prunus persica HOM05D005238 ORTHO05D006337 2.5e-21 107.1 112 51.8
Ca_03677_v3 Cicer arietinum L. HOM05D005238 ORTHO05D006337 9.6e-21 105.1 114 51.8
Eucgr.F03179 Eucalyptus grandis HOM05D005238 ORTHO05D006337 8.1e-20 102.1 114 52.6
Psat1g011080 Pisum sativum HOM05D005238 ORTHO05D006337 8.1e-20 102.1 114 51.8
TPR.G9757 Trifolium pratense HOM05D005238 ORTHO05D006337 2.4e-19 100.5 113 50.4
CANSAT80G2747 Cannabis sativa HOM05D005238 ORTHO05D006337 3.1e-19 100.1 112 50.0
BolC5t30204H Brassica oleracea HOM05D005238 ORTHO05D006337 4.0e-19 99.8 114 50.0
C05p14890 Brassica napus HOM05D005238 ORTHO05D006337 5.3e-19 99.4 114 50.0
GSVIVG01020424001 Vitis vinifera HOM05D005238 ORTHO05D006337 5.3e-19 99.4 114 50.9
MBI16_g40051_MAGBIO Magnolia biondii HOM05D005238 ORTHO05D006337 6.9e-19 99.0 114 50.0
MD10G1202400 Malus domestica HOM05D005238 ORTHO05D006337 6.9e-19 99.0 112 49.1
Sp1g14750 Schrenkiella parvula HOM05D005238 ORTHO05D006337 6.9e-19 99.0 114 50.0
BcaC05g25524 Brassica carinata HOM05D005238 ORTHO05D006337 9.0e-19 98.6 114 49.1
Glyma.15G255400 Glycine max HOM05D005238 ORTHO05D006337 9.0e-19 98.6 114 49.1
Ciclev10020284m.g Citrus clementina HOM05D005238 ORTHO05D006337 1.5e-18 97.8 114 49.1
Phvul.005G056900 Phaseolus vulgaris HOM05D005238 ORTHO05D006337 1.5e-18 97.8 114 50.0
Atru.chr2.1794 Acer truncatum HOM05D005238 ORTHO05D006337 2.0e-18 97.4 114 50.0
Dinv42511 Davidia involucrata HOM05D005238 ORTHO05D006337 2.0e-18 97.4 114 50.0
Manes.14G016200 Manihot esculenta HOM05D005238 ORTHO05D006337 2.0e-18 97.4 114 50.9
Medtr2g069490 Medicago truncatula HOM05D005238 ORTHO05D006337 2.6e-18 97.1 114 50.9
CiPaw.12G006900 Carya illinoinensis HOM05D005238 ORTHO05D006337 3.4e-18 96.7 114 52.6
Hma1.2p1_0334F.1_g128770 Hydrangea macrophylla HOM05D005238 ORTHO05D006337 3.4e-18 96.7 114 50.9
Hma1.2p1_0637F.1_g193540 Hydrangea macrophylla HOM05D005238 ORTHO05D006337 3.4e-18 96.7 114 50.0
Potri.011G143100 Populus trichocarpa HOM05D005238 ORTHO05D006337 4.5e-18 96.3 114 50.0
Rhsim06G0238800 Rhododendron simsii HOM05D005238 ORTHO05D006337 4.5e-18 96.3 114 50.0
AL1G28770 Arabidopsis lyrata HOM05D005238 ORTHO05D006337 9.9e-18 95.1 114 49.1
C08p17490 Brassica napus HOM05D005238 ORTHO05D006337 9.9e-18 95.1 112 48.2
BolC8t49374H Brassica oleracea HOM05D005238 ORTHO05D006337 9.9e-18 95.1 112 48.2
BcaC07g38806 Brassica carinata HOM05D005238 ORTHO05D006337 1.3e-17 94.7 114 49.1
CARHR017080 Cardamine hirsuta HOM05D005238 ORTHO05D006337 1.3e-17 94.7 114 49.1
VMungo1080G1161 Vigna mungo HOM05D005238 ORTHO05D006337 1.3e-17 94.7 114 48.2
Lj3g0001441 Lotus japonicus HOM05D005238 ORTHO05D006337 1.7e-17 94.4 114 47.4
QL04p073782 Quercus lobata HOM05D005238 ORTHO05D006337 1.7e-17 94.4 114 50.0
arahy.Tifrunner.gnm1.ann1.7NR7Q4 Arachis hypogaea HOM05D005238 ORTHO05D006337 2.2e-17 94.0 114 49.1
TWI39G0564 Tripterygium wilfordii HOM05D005238 ORTHO05D006337 2.2e-17 94.0 112 49.1
Glyma.08G172000 Glycine max HOM05D005238 ORTHO05D006337 2.9e-17 93.6 114 46.5
Manes.06G171800 Manihot esculenta HOM05D005238 ORTHO05D006337 2.9e-17 93.6 114 50.0
Dinv19619 Davidia involucrata HOM05D005238 ORTHO05D006337 4.9e-17 92.8 114 47.4
AT1G16610 Arabidopsis thaliana HOM05D005238 ORTHO05D006337 6.4e-17 92.4 115 49.6
Gohir.D01G026750 Gossypium hirsutum HOM05D005238 ORTHO05D006337 6.4e-17 92.4 115 49.6
Gohir.D01G026800 Gossypium hirsutum HOM05D005238 ORTHO05D006337 6.4e-17 92.4 115 49.6
TWI38G1616 Tripterygium wilfordii HOM05D005238 ORTHO05D006337 8.4e-17 92.0 112 48.2
Carub.0001s1636 Capsella rubella HOM05D005238 ORTHO05D006337 1.1e-16 91.7 114 47.4
Duzib187G0607 Durio zibethinus HOM05D005238 ORTHO05D006337 1.1e-16 91.7 114 47.4
FvH4_3g15770 Fragaria vesca HOM05D005238 ORTHO05D006337 1.1e-16 91.7 112 48.2
FAN11G0128 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.1e-16 91.7 112 48.2
Sabra11G0127900 Salix brachista HOM05D001622 ORTHO05D007320 1.4e-16 91.3 114 49.1
vmacro11663 Vaccinium macrocarpon HOM05D005238 ORTHO05D006337 1.4e-16 91.3 114 48.2
AUR62039165 Chenopodium quinoa HOM05D005238 ORTHO05D006337 3.2e-16 90.1 112 49.1
FAN21G1113 Fragaria x ananassa HOM05D005238 ORTHO05D006337 4.2e-16 89.7 112 47.3
Gohir.D13G157300 Gossypium hirsutum HOM05D005238 ORTHO05D006337 4.2e-16 89.7 114 47.4
Gorai.013G178100 Gossypium raimondii HOM05D005238 ORTHO05D006337 4.2e-16 89.7 114 47.4
Lj8A188G51 Lonicera japonica HOM05D005238 ORTHO05D006337 4.2e-16 89.7 114 48.2
RcHm_v2.0_Chr5g0026571 Rosa chinensis HOM05D005238 ORTHO05D006337 4.2e-16 89.7 112 47.3
CSS0017399 Camellia sinensis var. sinensis HOM05D005238 ORTHO05D006337 5.5e-16 89.4 114 47.4
CSS0024118 Camellia sinensis var. sinensis HOM05D005238 ORTHO05D006337 5.5e-16 89.4 114 47.4
Cfa002698 Carpinus fangiana HOM05D005238 ORTHO05D006337 5.5e-16 89.4 114 49.1
arahy.Tifrunner.gnm1.ann1.K2PXHZ Arachis hypogaea HOM05D005238 ORTHO05D006337 7.1e-16 89.0 114 48.2
Haze_24974 Corylus avellana HOM05D005238 ORTHO05D006337 7.1e-16 89.0 114 49.1
FAN25G0513 Fragaria x ananassa HOM05D006308 ORTHO05D007820 7.1e-16 89.0 112 47.3
EL10Ac2g03318 Beta vulgaris HOM05D005238 ORTHO05D006337 9.3e-16 88.6 112 46.4
BcaB03g13039 Brassica carinata HOM05D000001 ORTHO05D000003 9.3e-16 88.6 114 47.4
TAR627G0595 Trochodendron aralioides HOM05D005238 ORTHO05D006337 9.3e-16 88.6 114 47.4
AUR62043127 Chenopodium quinoa HOM05D005238 ORTHO05D006337 2.1e-15 87.4 112 47.3
FAN16G2086 Fragaria x ananassa HOM05D005238 ORTHO05D006337 2.1e-15 87.4 112 47.3
Duzib213G1032 Durio zibethinus HOM05D005238 ORTHO05D006337 2.7e-15 87.0 114 46.5
Lalb_Chr25g0284971 Lupinus albus HOM05D005238 ORTHO05D006337 2.7e-15 87.0 108 48.1
BraA08t35057Z Brassica rapa HOM05D000001 ORTHO05D000003 3.5e-15 86.7 114 46.5
Duzib268G1788 Durio zibethinus HOM05D005238 ORTHO05D006337 3.5e-15 86.7 114 46.5
Gohir.A13G153000 Gossypium hirsutum HOM05D005238 ORTHO05D006337 4.6e-15 86.3 114 45.6
Nn6g31521 Nelumbo nucifera HOM05D005238 ORTHO05D006337 6.0e-15 85.9 112 45.5
HanXRQChr03g0071621 Helianthus annuus HOM05D005238 ORTHO05D006337 7.9e-15 85.5 112 47.3
Nitab4.5_0008429g0030 Nicotiana tabacum HOM05D005238 ORTHO05D006337 7.9e-15 85.5 112 45.5
Cpa.g.sc10.47 Carica papaya HOM05D005238 ORTHO05D006337 1.3e-14 84.7 114 44.7
BcaB07g32526 Brassica carinata HOM05D002708 ORTHO05D006337 2.3e-14 84.0 113 46.9
Lalb_Chr20g0108761 Lupinus albus HOM05D005238 ORTHO05D006337 3.0e-14 83.6 114 45.6
Solyc10g005590.4 Solanum lycopersicum HOM05D005238 ORTHO05D006337 3.9e-14 83.2 112 45.5
Sopen10g001560 Solanum pennellii HOM05D005238 ORTHO05D006337 3.9e-14 83.2 112 45.5
PGSC0003DMG400011240 Solanum tuberosum HOM05D005238 ORTHO05D006337 3.9e-14 83.2 112 45.5
A06p12590 Brassica napus HOM05D005238 ORTHO05D006337 5.1e-14 82.8 112 45.5
A08p31340 Brassica napus HOM05D000001 ORTHO05D000003 5.1e-14 82.8 114 44.7
BraA06t24421Z Brassica rapa HOM05D005238 ORTHO05D006337 5.1e-14 82.8 112 45.5
Cc05_g16060 Coffea canephora HOM05D005238 ORTHO05D006337 5.1e-14 82.8 114 46.5
Migut.M01557 Erythranthe guttata HOM05D005238 ORTHO05D006337 5.1e-14 82.8 114 44.7
SGA_v2.0_scaffold186G40218 Striga asiatica HOM05D005238 ORTHO05D006337 5.1e-14 82.8 114 43.9
C08p44400 Brassica napus HOM05D005238 ORTHO05D006337 8.7e-14 82.0 116 46.6
CDE01G0718 Ceratophyllum demersum HOM05D005238 ORTHO05D006337 8.7e-14 82.0 115 46.1
Oeu003828.2 Olea europaea HOM05D005238 ORTHO05D006337 1.1e-13 81.6 114 43.0
Oeu052006.1 Olea europaea HOM05D005238 ORTHO05D006337 1.1e-13 81.6 114 42.1
Aa31LG7G1130 Aethionema arabicum HOM05D005238 ORTHO05D006337 1.9e-13 80.9 107 46.7
THA.LOC104813616 Tarenaya hassleriana HOM05D005238 ORTHO05D006337 3.3e-13 80.1 114 45.6
MSTRG.7059 Avicennia marina HOM05D005238 ORTHO05D006337 4.3e-13 79.7 114 43.0
ATR1136G058 Amborella trichopoda HOM05D005238 ORTHO05D006337 5.6e-13 79.3 114 43.0
SalBow8G4928 Salvia bowleyana HOM05D005238 ORTHO05D006337 5.6e-13 79.3 113 43.4
CDE12G0696 Ceratophyllum demersum HOM05D005238 ORTHO05D006337 9.6e-13 78.6 104 45.2
ClCG11G016430 Citrullus lanatus HOM05D005238 ORTHO05D006337 9.6e-13 78.6 94 44.7
CsaV3_4G031880 Cucumis sativus L. HOM05D005238 ORTHO05D006337 9.6e-13 78.6 94 44.7
PSO782G5275 Papaver somniferum HOM05D005238 ORTHO05D006337 9.6e-13 78.6 112 42.9
DCAR_013738 Daucus carota HOM05D005238 ORTHO05D006337 1.3e-12 78.2 114 43.9
Lsat_1_v5_gn_7_65541 Lactuca sativa HOM05D005238 ORTHO05D006337 1.3e-12 78.2 113 45.1
PSO170G6647 Papaver somniferum HOM05D005238 ORTHO05D006337 1.3e-12 78.2 112 42.9
ECA240G2789 Erigeron canadensis HOM05D005238 ORTHO05D006337 1.6e-12 77.8 111 41.4
Thecc.07G152800 Theobroma cacao HOM05D005238 ORTHO05D006337 6.2e-12 75.9 114 43.0
PSO017G0328 Papaver somniferum HOM05D005238 ORTHO05D006337 8.1e-12 75.5 114 40.4
PSO170G0319 Papaver somniferum HOM05D005238 ORTHO05D006337 8.1e-12 75.5 114 40.4
MELO3C026965.2 Cucumis melo HOM05D005238 ORTHO05D006337 1.1e-11 75.1 114 41.2
Gorai.002G036200 Gossypium raimondii HOM05D005238 ORTHO05D006337 1.4e-11 74.7 100 46.0
DCAR_016821 Daucus carota HOM05D005238 ORTHO05D006337 4.0e-11 73.2 112 43.8
Peaxi162Scf00018g00105 Petunia axillaris HOM05D005238 ORTHO05D006337 4.0e-11 73.2 113 41.6
HPP92_011420 Vanilla planifolia HOM05D005238 ORTHO05D006337 4.0e-11 73.2 114 41.2
A09p60810 Brassica napus HOM05D005238 ORTHO05D006337 6.9e-11 72.4 116 42.2
SEGI_03141 Sequoiadendron giganteum HOM05D005238 ORTHO05D006337 6.9e-11 72.4 109 44.0
Zm00001eb362580 Zea mays HOM05D005238 ORTHO05D006337 9.0e-11 72.0 115 42.6
BraA09t41454Z Brassica rapa HOM05D005238 ORTHO05D006337 1.2e-10 71.6 116 41.4
Aqoxy6G00105 Aquilegia oxysepala HOM05D005238 ORTHO05D006337 1.5e-10 71.2 114 41.2
BolC8t51981H Brassica oleracea HOM05D005238 ORTHO05D006337 1.5e-10 71.2 116 41.4
PGR031G1019 Punica granatum HOM05D005238 ORTHO05D006337 4.5e-10 69.7 80 48.8
Actinidia07350 Actinidia chinensis HOM05D005238 ORTHO05D006337 7.6e-10 68.9 88 45.5
Os05g0105900 Oryza sativa ssp. japonica HOM05D005238 ORTHO05D006337 1.7e-09 67.8 115 40.0
Gohir.A01G039100 Gossypium hirsutum HOM05D005238 ORTHO05D006337 2.9e-09 67.0 88 45.5
unitig_748.g7636 Utricularia gibba HOM05D005238 ORTHO05D006337 3.8e-09 66.6 114 39.5
PSO063G3689 Papaver somniferum HOM05D005238 ORTHO05D006337 8.4e-09 65.5 110 39.1
Zm00001eb140450 Zea mays HOM05D005238 ORTHO05D006337 1.1e-08 65.1 108 40.7
Aa31LG4G1900 Aethionema arabicum HOM05D005238 ORTHO05D006337 1.4e-08 64.7 113 39.8
Thhalv10007778m.g Eutrema salsugineum HOM05D005238 ORTHO05D006337 1.9e-08 64.3 82 45.1
Pp3c8_3970 Physcomitrium patens HOM05D005238 ORTHO05D006337 1.9e-08 64.3 113 39.8
SEGI_37868 Sequoiadendron giganteum HOM05D005238 ORTHO05D006337 1.9e-08 64.3 114 38.6
Os01g0959000 Oryza sativa ssp. japonica HOM05D005238 ORTHO05D006337 9.3e-08 62.0 99 38.4
Sed0003933 Sechium edule HOM05D005238 ORTHO05D006337 9.3e-08 62.0 85 41.2
Pp3c12_22790 Physcomitrium patens HOM05D005238 ORTHO05D006337 1.6e-07 61.2 117 40.2
Mapoly0011s0143 Marchantia polymorpha HOM05D005238 ORTHO05D006337 2.1e-07 60.8 114 40.4
Pp3c3_28550 Physcomitrium patens HOM05D005238 ORTHO05D006337 2.7e-07 60.5 119 38.7


User provided reference genes

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