Gene: vmacro11663

General Information

Structural Information

  • Species Vaccinium macrocarpon
  • Gene Identifier vmacro11663
  • Transcript Identifier vmacro11663-RA
  • Gene Type Coding gene
  • Location chr11_Vaccinium_macrocarpon_Stevens_v1 : 162214-168973 : negative

Gene Family Information

  • ID HOM05D005238
  • #Genes/#Species 144/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id vmacro11663_Vaccinium_macrocarpon_Stevens_v1

Descriptions

  • Description Similar to SR45: Serine/arginine-rich splicing factor SR45 (Arabidopsis thaliana OX=3702)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000381
ISO
PLAZA Integrative Orthologyregulation of alternative mRNA splicing, via spliceosome AT1G16610
GO:0010182
ISO
PLAZA Integrative Orthologysugar mediated signaling pathway AT1G16610
GO:0000398
ISO
PLAZA Integrative OrthologymRNA splicing, via spliceosome AT1G16610

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G16610

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016607
ISO
PLAZA Integrative Orthologynuclear speck AT1G16610
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT1G16610
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT1G16610

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR034201 RNPS1, RNA recognition motif
IPR000504 RNA recognition motif domain
IPR035979 RNA-binding domain superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
17.3.1.2.1 Protein biosynthesis.mRNA quality control.Exon Junction complex (EJC).peripheral components.component RNPS1