Gene: Pp3c12_22790

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c12_22790
  • Transcript Identifier Pp3c12_22790V3.17
  • Gene Type Coding gene
  • Location Chr12 : 15120324-15124066 : negative

Gene Family Information

  • ID HOM05D005238
  • #Genes/#Species 144/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c12_22790V3.17
  • pacid 32973367
  • alias Pp1s118_176V6
  • alias Phpat.012G079200
  • alias Phypa_166555
  • uniprot A0A2K1JRS6

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IBA
GOA DatabasemRNA splicing, via spliceosome
GO:0000381
ISO
PLAZA Integrative Orthologyregulation of alternative mRNA splicing, via spliceosome AT1G16610
GO:0010182
ISO
PLAZA Integrative Orthologysugar mediated signaling pathway AT1G16610

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G16610

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005737
IBA
GOA Databasecytoplasm
GO:0005654
IBA
GOA Databasenucleoplasm
GO:0061574
IBA
GOA DatabaseASAP complex
GO:0016607
ISO
PLAZA Integrative Orthologynuclear speck AT1G16610
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT1G16610

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR034201 RNPS1, RNA recognition motif
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR000504 RNA recognition motif domain
IPR035979 RNA-binding domain superfamily
Mapman id Description
17.3.1.2.1 Protein biosynthesis.mRNA quality control.Exon Junction complex (EJC).peripheral components.component RNPS1