Gene: Os05g0105900

General Information

Structural Information

  • Species Oryza sativa ssp. japonica
  • Gene Identifier Os05g0105900
  • Transcript Identifier Os05t0105900-01
  • Gene Type Coding gene
  • Location chr05 : 317275-320149 : positive

Gene Family Information

  • ID HOM05D005238
  • #Genes/#Species 144/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Os05t0105900-01
  • MSU-ID LOC_Os05g01540.1
  • MSU-ID LOC_Os05g01540.2
  • uniprot Q65XI3

Descriptions

  • Description Nucleotide-binding, alpha-beta plait domain containing protein.
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IBA
GOA DatabasemRNA splicing, via spliceosome
GO:0000381
ISO
PLAZA Integrative Orthologyregulation of alternative mRNA splicing, via spliceosome AT1G16610
GO:0010182
ISO
PLAZA Integrative Orthologysugar mediated signaling pathway AT1G16610

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G16610

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005737
IBA
GOA Databasecytoplasm
GO:0005654
IBA
GOA Databasenucleoplasm
GO:0061574
IBA
GOA DatabaseASAP complex
GO:0016607
ISO
PLAZA Integrative Orthologynuclear speck AT1G16610
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT1G16610

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR034201 RNPS1, RNA recognition motif
IPR035979 RNA-binding domain superfamily
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
17.3.1.2.1 Protein biosynthesis.mRNA quality control.Exon Junction complex (EJC).peripheral components.component RNPS1