Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0006590 Simmondsia chinensis HOM05D007300 ORTHO05D009301 0.0e+00 1280.4 665 100.0
AUR62027555 Chenopodium quinoa HOM05D007300 ORTHO05D009301 2.9e-192 676.0 610 56.9
GSVIVG01021378001 Vitis vinifera HOM05D007300 ORTHO05D009301 2.9e-192 676.0 668 54.9
AUR62035801 Chenopodium quinoa HOM05D007300 ORTHO05D009301 2.2e-187 659.8 610 55.9
Dinv32299 Davidia involucrata HOM05D007300 ORTHO05D009301 2.2e-187 659.8 659 53.7
Potri.001G353800 Populus trichocarpa HOM05D007300 ORTHO05D009301 6.5e-184 648.3 611 56.3
FvH4_3g06410 Fragaria vesca HOM05D007300 ORTHO05D009301 1.9e-183 646.7 672 52.4
FAN21G2574 Fragaria x ananassa HOM05D007300 ORTHO05D009301 2.7e-182 642.9 670 52.1
TAR627G1006 Trochodendron aralioides HOM05D007300 ORTHO05D009301 2.7e-182 642.9 614 53.3
RcHm_v2.0_Chr5g0012901 Rosa chinensis HOM05D007300 ORTHO05D009301 6.7e-181 638.3 675 51.4
Sabra16G0232700 Salix brachista HOM05D007300 ORTHO05D009301 3.3e-180 636.0 627 54.4
CiPaw.10G096200 Carya illinoinensis HOM05D007300 ORTHO05D009301 5.7e-180 635.2 680 52.4
TWI73G0852 Tripterygium wilfordii HOM05D007300 ORTHO05D009301 6.3e-179 631.7 670 49.7
QL05p060322 Quercus lobata HOM05D007300 ORTHO05D009301 1.1e-178 630.9 673 51.6
Prupe.4G073700 Prunus persica HOM05D007300 ORTHO05D009301 9.1e-178 627.9 670 51.5
MD05G1291800 Malus domestica HOM05D007300 ORTHO05D009301 2.9e-176 622.9 696 50.6
FAN11G2841 Fragaria x ananassa HOM05D007300 ORTHO05D009301 5.0e-176 622.1 733 48.7
CSS0020184 Camellia sinensis var. sinensis HOM05D007300 ORTHO05D009301 8.5e-176 621.3 675 49.3
Actinidia19486 Actinidia chinensis HOM05D007300 ORTHO05D009301 1.1e-175 620.9 673 51.0
Oeu021524.1 Olea europaea HOM05D007300 ORTHO05D009301 6.1e-174 615.1 608 53.0
Cfa001024 Carpinus fangiana HOM05D007300 ORTHO05D009301 8.0e-174 614.8 678 51.3
Thecc.06G157700 Theobroma cacao HOM05D007300 ORTHO05D009301 1.4e-173 614.0 671 50.1
ClCG03G007190 Citrullus lanatus HOM05D007300 ORTHO05D009301 2.3e-173 613.2 677 50.2
Aqoxy1G01857 Aquilegia oxysepala HOM05D007300 ORTHO05D009301 6.7e-173 611.7 676 48.5
CsaV3_1G032780 Cucumis sativus L. HOM05D007300 ORTHO05D009301 1.3e-171 607.4 672 49.3
Ciclev10014510m.g Citrus clementina HOM05D007300 ORTHO05D009301 2.4e-170 603.2 670 49.1
Nitab4.5_0003714g0040 Nicotiana tabacum HOM05D007300 ORTHO05D009301 2.0e-169 600.1 673 49.0
Manes.17G064900 Manihot esculenta HOM05D007300 ORTHO05D009301 4.5e-169 599.0 670 50.6
Nitab4.5_0001283g0060 Nicotiana tabacum HOM05D007300 ORTHO05D009301 1.7e-168 597.0 668 49.3
Gohir.D10G038600 Gossypium hirsutum HOM05D007300 ORTHO05D009301 4.2e-167 592.4 675 48.1
CANSAT35G1474 Cannabis sativa HOM05D007300 ORTHO05D009301 9.4e-167 591.3 685 50.1
PSO541G4163 Papaver somniferum HOM05D007300 ORTHO05D009301 1.2e-166 590.9 680 48.2
Gorai.011G040700 Gossypium raimondii HOM05D007300 ORTHO05D009301 1.6e-166 590.5 675 48.0
Gohir.A10G037600 Gossypium hirsutum HOM05D007300 ORTHO05D009301 2.1e-166 590.1 675 48.0
HanXRQChr04g0119571 Helianthus annuus HOM05D007300 ORTHO05D009301 3.6e-166 589.3 664 48.8
ECA236G2360 Erigeron canadensis HOM05D007300 ORTHO05D009301 6.1e-166 588.6 673 48.3
PGSC0003DMG400003073 Solanum tuberosum HOM05D007300 ORTHO05D009301 4.4e-164 582.4 675 48.0
Solyc02g071280.3 Solanum lycopersicum HOM05D007300 ORTHO05D009301 1.3e-163 580.9 676 48.2
Lj1C1181T32 Lonicera japonica HOM05D007300 ORTHO05D009301 1.7e-163 580.5 678 48.5
Nn3g20905 Nelumbo nucifera HOM05D007300 ORTHO05D009301 2.2e-163 580.1 626 51.0
COL.COLO4_22798 Corchorus olitorius HOM05D007300 ORTHO05D009301 2.8e-163 579.7 681 48.9
Atru.chr10.1398 Acer truncatum HOM05D007300 ORTHO05D009301 6.3e-163 578.6 563 52.8
Atru.chr10.1407 Acer truncatum HOM05D007300 ORTHO05D009301 8.3e-163 578.2 562 52.5
Haze_05485 Corylus avellana HOM05D007300 ORTHO05D009301 8.3e-163 578.2 707 47.2
Sopen02g020340 Solanum pennellii HOM05D007300 ORTHO05D009301 1.8e-162 577.0 676 47.6
Peaxi162Scf00649g00027 Petunia axillaris HOM05D007300 ORTHO05D009301 2.4e-162 576.6 609 50.7
Cpa.g.sc17.110 Carica papaya HOM05D007300 ORTHO05D009301 7.0e-162 575.1 612 50.2
THA.LOC104827733 Tarenaya hassleriana HOM05D007300 ORTHO05D009301 1.2e-161 574.3 682 47.7
Lsat_1_v5_gn_7_31040 Lactuca sativa HOM05D007300 ORTHO05D009301 7.7e-161 571.6 664 48.3
Eucgr.D00343 Eucalyptus grandis HOM05D007300 ORTHO05D009301 1.0e-160 571.2 687 46.6
MBI10_g02388_MAGBIO Magnolia biondii HOM05D007300 ORTHO05D009301 1.7e-160 570.5 664 47.4
DCAR_027959 Daucus carota HOM05D007300 ORTHO05D009301 8.6e-160 568.2 609 50.1
CAN.G257.51 Capsicum annuum HOM05D007300 ORTHO05D009301 3.3e-159 566.2 674 47.5
Thhalv10000812m.g Eutrema salsugineum HOM05D007300 ORTHO05D009301 7.2e-159 565.1 676 46.4
BolC7t43517H Brassica oleracea HOM05D007300 ORTHO05D009301 9.5e-159 564.7 670 47.8
A06p45940 Brassica napus HOM05D007300 ORTHO05D009301 6.1e-158 562.0 678 47.1
Medtr8g088030 Medicago truncatula HOM05D007300 ORTHO05D009301 1.8e-157 560.5 613 48.9
C07p29650 Brassica napus HOM05D007300 ORTHO05D009301 5.2e-157 558.9 670 47.2
EL10Ac8g19794 Beta vulgaris HOM05D007300 ORTHO05D009301 1.2e-156 557.8 682 48.2
Carub.0008s0147 Capsella rubella HOM05D007300 ORTHO05D009301 2.6e-156 556.6 673 46.7
SalBow8G1735 Salvia bowleyana HOM05D007300 ORTHO05D009301 3.4e-156 556.2 621 48.5
Sp2g11270 Schrenkiella parvula HOM05D007300 ORTHO05D009301 9.8e-156 554.7 673 47.1
Ca_17871_v3 Cicer arietinum L. HOM05D007300 ORTHO05D009301 2.8e-155 553.1 599 49.1
AT5G46420 Arabidopsis thaliana HOM05D007300 ORTHO05D009301 4.9e-155 552.4 673 45.6
BraA06t27457Z Brassica rapa HOM05D007300 ORTHO05D009301 4.9e-155 552.4 664 47.4
Glyma.05G164500 Glycine max HOM05D007300 ORTHO05D009301 4.9e-155 552.4 664 46.4
Glyma.08G121900 Glycine max HOM05D007300 ORTHO05D009301 2.4e-154 550.1 658 46.4
Lj4g0024386 Lotus japonicus HOM05D007300 ORTHO05D009301 4.1e-154 549.3 615 48.3
AL8G11990 Arabidopsis lyrata HOM05D007300 ORTHO05D009301 9.2e-154 548.1 678 45.4
Migut.M00959 Erythranthe guttata HOM05D007300 ORTHO05D009301 1.2e-153 547.7 677 46.4
Aa31LG9G6430 Aethionema arabicum HOM05D007300 ORTHO05D009301 1.1e-151 541.2 680 46.0
Lalb_Chr13g0295471 Lupinus albus HOM05D007300 ORTHO05D009301 2.1e-150 537.0 633 47.7
SGA_v2.0_scaffold1G00132 Striga asiatica HOM05D007300 ORTHO05D009301 4.7e-150 535.8 672 46.4
CARHR175340 Cardamine hirsuta HOM05D007300 ORTHO05D009301 3.1e-149 533.1 662 46.1
Phvul.002G244500 Phaseolus vulgaris HOM05D007300 ORTHO05D009301 3.1e-149 533.1 656 46.3
TPR.G6793 Trifolium pratense HOM05D007300 ORTHO05D009301 1.5e-148 530.8 600 47.5
Psat7g066760 Pisum sativum HOM05D007300 ORTHO05D009301 2.9e-147 526.6 644 45.0
PGR044G1273 Punica granatum HOM05D007300 ORTHO05D009301 4.9e-147 525.8 562 51.1
arahy.Tifrunner.gnm1.ann1.D64P8M Arachis hypogaea HOM05D007300 ORTHO05D009301 1.9e-146 523.9 662 46.4
Duzib235G1110 Durio zibethinus HOM05D007300 ORTHO05D009301 3.2e-146 523.1 672 44.9
arahy.Tifrunner.gnm1.ann1.FQ35JE Arachis hypogaea HOM05D007300 ORTHO05D009301 5.4e-146 522.3 674 45.7
VMungo0251G3397 Vigna mungo HOM05D007300 ORTHO05D009301 1.6e-142 510.8 642 46.4
HPP92_023296 Vanilla planifolia HOM05D007300 ORTHO05D009301 1.9e-127 460.7 682 40.8
FAN16G1565 Fragaria x ananassa HOM05D007300 ORTHO05D009301 9.6e-127 458.4 487 50.7
ATR1153G036 Amborella trichopoda HOM05D007300 ORTHO05D009301 2.7e-121 440.3 670 39.6
Sed0024786 Sechium edule HOM05D007300 ORTHO05D009301 4.6e-105 386.3 462 49.8
PSO675G3105 Papaver somniferum HOM05D007300 ORTHO05D009301 4.0e-101 373.2 363 56.7
unitig_92.g28150 Utricularia gibba HOM05D007300 ORTHO05D009301 9.3e-98 362.1 591 38.6
HPP92_023271 Vanilla planifolia HOM05D007300 ORTHO05D009301 6.7e-88 329.3 679 33.1
SEGI_38698 Sequoiadendron giganteum HOM05D007300 ORTHO05D009301 2.5e-87 327.4 565 34.2
MELO3C002704.2 Cucumis melo HOM05D007300 ORTHO05D009301 4.5e-76 290.0 362 42.5
Mapoly0019s0078 Marchantia polymorpha HOM05D007300 ORTHO05D009301 2.9e-75 287.3 713 30.2
Zm00001eb296050 Zea mays HOM05D007300 ORTHO05D009301 5.1e-72 276.6 346 44.5
Pp3c15_14250 Physcomitrium patens HOM05D007300 ORTHO05D009301 4.4e-71 273.5 543 31.9
CDE06G2820 Ceratophyllum demersum HOM05D007300 ORTHO05D009301 1.0e-67 262.3 340 46.2
AagrBONN_evm.TU.Sc2ySwM_228.1844 Anthoceros agrestis HOM05D007300 ORTHO05D004905 1.2e-65 255.4 532 32.3
Os05g0566300 Oryza sativa ssp. japonica HOM05D007300 ORTHO05D009301 8.0e-57 226.1 207 51.2
Zm00001eb349440 Zea mays HOM05D007300 ORTHO05D009301 3.5e-44 184.1 176 50.6
Gorai.004G093400 Gossypium raimondii HOM05D007300 ORTHO05D009301 1.6e-33 148.7 154 50.6
Gohir.D08G088700 Gossypium hirsutum HOM05D007300 ORTHO05D009301 4.7e-33 147.1 159 49.7
SEGI_17563 Sequoiadendron giganteum HOM05D007300 ORTHO05D009301 2.9e-30 137.9 159 42.1
MCO05G669 Micromonas commoda HOM05D007300 ORTHO05D009301 8.6e-27 126.3 228 33.8
Cre03.g191950 Chlamydomonas reinhardtii HOM05D007300 ORTHO05D009301 1.0e-19 102.8 210 32.9
Zm00001eb184690 Zea mays HOM05D007300 ORTHO05D009301 2.5e-18 98.2 82 51.2
CDE06G1765 Ceratophyllum demersum HOM05D007300 ORTHO05D009301 3.7e-14 84.3 153 31.4
CDE01G0678 Ceratophyllum demersum HOM05D000154 ORTHO05D004905 1.5e-10 72.4 280 26.1
Cfa023099 Carpinus fangiana HOM05D003927 ORTHO05D004905 1.2e-09 69.3 267 21.7
TAR625G0767 Trochodendron aralioides HOM05D003927 ORTHO05D004905 2.8e-09 68.2 180 29.4
TAR628G0742 Trochodendron aralioides HOM05D003927 ORTHO05D004905 2.8e-09 68.2 180 30.0
CANSAT64G2986 Cannabis sativa HOM05D003927 ORTHO05D004905 4.7e-09 67.4 184 28.8
Sed0013384 Sechium edule HOM05D003927 ORTHO05D004905 8.1e-09 66.6 197 26.9
TAR624G0604 Trochodendron aralioides HOM05D003927 ORTHO05D004905 1.4e-08 65.9 180 28.9
DCAR_003771 Daucus carota HOM05D003927 ORTHO05D004905 3.1e-08 64.7 179 28.5
Haze_26176 Corylus avellana HOM05D003927 ORTHO05D004905 5.2e-08 63.9 240 25.4
Os08g0206900 Oryza sativa ssp. japonica HOM05D003927 ORTHO05D004905 4.4e-07 60.8 172 27.9
THA.LOC104798460 Tarenaya hassleriana HOM05D007300 ORTHO05D009301 3.8e-06 57.8 137 33.6


User provided reference genes

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