Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0001390 Simmondsia chinensis HOM05D007082 ORTHO05D008895 1.5e-89 332.8 161 100.0
Hund09516 Selenicereus undatus HOM05D007082 ORTHO05D008895 2.6e-54 215.7 149 70.5
Ah.11g050380 Amaranthus hybridus HOM05D007082 ORTHO05D008895 4.3e-49 198.4 148 64.9
Dinv32900 Davidia involucrata HOM05D007082 ORTHO05D008895 9.6e-49 197.2 155 62.6
SalBow4G2456 Salvia bowleyana HOM05D007082 ORTHO05D008895 2.0e-46 189.5 150 60.7
MD03G1260600 Malus domestica HOM05D007082 ORTHO05D008895 2.6e-46 189.1 152 57.2
Potri.005G212900 Populus trichocarpa HOM05D007082 ORTHO05D008895 3.4e-46 188.7 150 58.7
Haze_04674 Corylus avellana HOM05D007082 ORTHO05D008895 7.6e-46 187.6 150 58.7
Cfa004492 Carpinus fangiana HOM05D007082 ORTHO05D008895 1.3e-45 186.8 150 59.3
CiPaw.07G089100 Carya illinoinensis HOM05D007082 ORTHO05D008895 1.7e-45 186.4 150 58.7
EL10Ac5g10526 Beta vulgaris HOM05D007082 ORTHO05D008895 2.2e-45 186.0 149 61.1
Lj2P1167T48 Lonicera japonica HOM05D007082 ORTHO05D008895 2.9e-45 185.7 150 56.0
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 3.8e-45 185.3 147 58.5
MSTRG.18253 Avicennia marina HOM05D007082 ORTHO05D008895 8.4e-45 184.1 150 56.7
CSS0021912 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 1.4e-44 183.3 152 58.6
CSS0029740 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 1.4e-44 183.3 152 58.6
vmacro14749 Vaccinium macrocarpon HOM05D007082 ORTHO05D008895 1.9e-44 183.0 150 60.0
Oeu025749.1 Olea europaea HOM05D007082 ORTHO05D008895 3.2e-44 182.2 150 57.3
Haze_10047 Corylus avellana HOM05D007082 ORTHO05D008895 4.2e-44 181.8 150 58.0
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 7.1e-44 181.0 152 55.9
RcHm_v2.0_Chr6g0290411 Rosa chinensis HOM05D007082 ORTHO05D008895 1.6e-43 179.9 152 54.6
Rhsim13G0027400 Rhododendron simsii HOM05D007082 ORTHO05D008895 2.1e-43 179.5 151 58.3
TWI12G0539 Tripterygium wilfordii HOM05D007082 ORTHO05D008895 2.7e-43 179.1 150 57.3
CAN.G410.16 Capsicum annuum HOM05D007082 ORTHO05D008895 4.6e-43 178.3 149 54.4
SGA_v2.0_scaffold12G06137 Striga asiatica HOM05D003153 ORTHO05D008895 7.9e-43 177.6 150 56.7
SGA_v2.0_scaffold1G00512 Striga asiatica HOM05D007082 ORTHO05D008895 7.9e-43 177.6 150 57.3
Cc01_g19180 Coffea canephora HOM05D007082 ORTHO05D008895 1.3e-42 176.8 150 54.7
PSO832G2607 Papaver somniferum HOM05D007082 ORTHO05D008895 1.3e-42 176.8 151 57.6
PSO210G1980 Papaver somniferum HOM05D007082 ORTHO05D008895 3.9e-42 175.3 151 56.3
QL12p020738 Quercus lobata HOM05D007082 ORTHO05D008895 3.9e-42 175.3 148 57.4
Nitab4.5_0016351g0010 Nicotiana tabacum HOM05D007082 ORTHO05D008895 5.1e-42 174.9 150 54.7
Haze_10052 Corylus avellana HOM05D007082 ORTHO05D008895 1.5e-41 173.3 150 54.7
Migut.D00329 Erythranthe guttata HOM05D007082 ORTHO05D008895 1.9e-41 172.9 153 56.2
Eucgr.H01442 Eucalyptus grandis HOM05D007082 ORTHO05D008895 3.3e-41 172.2 149 55.0
Manes.01G205300 Manihot esculenta HOM05D007082 ORTHO05D008895 3.3e-41 172.2 150 54.7
CANSAT25G2376 Cannabis sativa HOM05D007082 ORTHO05D008895 4.3e-41 171.8 150 56.0
TAR622G1184 Trochodendron aralioides HOM05D007082 ORTHO05D008895 4.3e-41 171.8 153 54.9
Eucgr.H01429 Eucalyptus grandis HOM05D007082 ORTHO05D008895 5.6e-41 171.4 149 54.4
FvH4_2g23151 Fragaria vesca HOM05D007082 ORTHO05D008895 5.6e-41 171.4 152 52.0
Sopen01g035010 Solanum pennellii HOM05D007082 ORTHO05D008895 5.6e-41 171.4 150 52.0
Sed0015110 Sechium edule HOM05D007082 ORTHO05D008895 7.4e-41 171.0 151 52.3
DCAR_002714 Daucus carota HOM05D007082 ORTHO05D008895 9.6e-41 170.6 148 54.1
Eucgr.H01435 Eucalyptus grandis HOM05D007082 ORTHO05D008895 1.3e-40 170.2 149 55.0
HanXRQChr05g0154391 Helianthus annuus HOM05D007082 ORTHO05D008895 2.1e-40 169.5 151 55.0
Eucgr.H01418 Eucalyptus grandis HOM05D007082 ORTHO05D008895 3.7e-40 168.7 149 53.0
FAN20G2212 Fragaria x ananassa HOM05D007082 ORTHO05D008895 3.7e-40 168.7 152 50.7
Cpa.g.sc41.65 Carica papaya HOM05D007082 ORTHO05D008895 6.2e-40 167.9 157 51.0
Ciclev10022619m.g Citrus clementina HOM05D007082 ORTHO05D008895 6.2e-40 167.9 150 50.0
Duzib128G1180 Durio zibethinus HOM05D007082 ORTHO05D008895 1.8e-39 166.4 149 53.0
Thecc.05G027700 Theobroma cacao HOM05D007082 ORTHO05D008895 1.5e-38 163.3 150 52.0
Lj2g0002316 Lotus japonicus HOM05D007082 ORTHO05D008895 5.8e-38 161.4 151 51.7
Nn5g27058 Nelumbo nucifera HOM05D007082 ORTHO05D008895 7.6e-38 161.0 154 51.3
Atru.chr5.1487 Acer truncatum HOM05D000296 ORTHO05D000175 1.0e-37 160.6 151 51.0
ClCG07G000420 Citrullus lanatus HOM05D007082 ORTHO05D008895 1.0e-37 160.6 148 50.7
MELO3C014298.2 Cucumis melo HOM05D007082 ORTHO05D008895 4.9e-37 158.3 148 50.7
TPR.G34570 Trifolium pratense HOM05D007082 ORTHO05D008895 4.9e-37 158.3 151 51.0
CsaV3_2G013600 Cucumis sativus L. HOM05D007082 ORTHO05D008895 6.5e-37 157.9 148 50.7
Lsat_1_v5_gn_9_86820 Lactuca sativa HOM05D007082 ORTHO05D008895 6.5e-37 157.9 150 54.0
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 8.4e-37 157.5 136 55.9
arahy.Tifrunner.gnm1.ann1.4F6QX0 Arachis hypogaea HOM05D007082 ORTHO05D008895 1.1e-36 157.1 151 52.3
COL.COLO4_14680 Corchorus olitorius HOM05D007082 ORTHO05D008895 1.1e-36 157.1 150 50.0
PGR119G0159 Punica granatum HOM05D007082 ORTHO05D008895 1.4e-36 156.8 158 48.1
Gohir.D07G082600 Gossypium hirsutum HOM05D007082 ORTHO05D008895 1.9e-36 156.4 149 47.7
AUR62032313 Chenopodium quinoa HOM05D007082 ORTHO05D008895 2.5e-36 156.0 148 54.7
Gorai.001G088200 Gossypium raimondii HOM05D007082 ORTHO05D008895 2.5e-36 156.0 149 48.3
Psat6g025560 Pisum sativum HOM05D007082 ORTHO05D008895 3.2e-36 155.6 152 50.7
arahy.Tifrunner.gnm1.ann1.CZ80LA Arachis hypogaea HOM05D007082 ORTHO05D008895 4.2e-36 155.2 151 52.3
Lalb_Chr10g0095561 Lupinus albus HOM05D007082 ORTHO05D008895 1.2e-35 153.7 151 49.7
SHI10976 Sapria himalayana HOM05D007082 ORTHO05D008895 1.6e-35 153.3 148 52.7
AUR62011993 Chenopodium quinoa HOM05D007082 ORTHO05D008895 2.1e-35 152.9 148 54.1
MBI19_g34822_MAGBIO Magnolia biondii HOM05D007082 ORTHO05D008895 2.7e-35 152.5 150 50.0
Psat6g050280 Pisum sativum HOM05D007082 ORTHO05D008895 2.7e-35 152.5 151 51.0
Lsat_1_v5_gn_9_6120 Lactuca sativa HOM05D007082 ORTHO05D008895 1.0e-34 150.6 150 52.0
Aa31LG5G6620 Aethionema arabicum HOM05D007082 ORTHO05D008895 3.9e-34 148.7 150 50.7
HanXRQChr16g0516211 Helianthus annuus HOM05D007082 ORTHO05D008895 6.7e-34 147.9 142 54.2
Medtr1g033230 Medicago truncatula HOM05D007082 ORTHO05D008895 1.9e-33 146.4 151 46.4
AT1G07130 Arabidopsis thaliana HOM05D007082 ORTHO05D008895 2.5e-33 146.0 150 48.7
ECA247G0055 Erigeron canadensis HOM05D007082 ORTHO05D008895 2.5e-33 146.0 115 57.4
Carub.0001s0641 Capsella rubella HOM05D007082 ORTHO05D008895 3.3e-33 145.6 151 46.4
Medtr5g020430 Medicago truncatula HOM05D007082 ORTHO05D008895 3.3e-33 145.6 151 46.4
AL1G17250 Arabidopsis lyrata HOM05D007082 ORTHO05D008895 5.7e-33 144.8 150 49.3
Sp1g05880 Schrenkiella parvula HOM05D007082 ORTHO05D008895 2.2e-32 142.9 151 49.0
THA.LOC104800748 Tarenaya hassleriana HOM05D007082 ORTHO05D008895 3.7e-32 142.1 150 48.0
CARHR006820 Cardamine hirsuta HOM05D007082 ORTHO05D008895 2.4e-31 139.4 151 47.0
Thhalv10008979m.g Eutrema salsugineum HOM05D007082 ORTHO05D008895 1.2e-30 137.1 151 47.7
VMungo1215G3041 Vigna mungo HOM05D007082 ORTHO05D008895 1.5e-30 136.7 154 49.4
A08p35770 Brassica napus HOM05D007082 ORTHO05D008895 1.0e-29 134.0 150 48.0
BraA08t35483Z Brassica rapa HOM05D007082 ORTHO05D008895 1.0e-29 134.0 150 48.0
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 1.0e-29 134.0 157 44.6
C08p02920 Brassica napus HOM05D007082 ORTHO05D008895 1.3e-29 133.7 150 46.0
BolC8t47089H Brassica oleracea HOM05D007082 ORTHO05D008895 1.3e-29 133.7 150 46.0
CDE05G2411 Ceratophyllum demersum HOM05D007082 ORTHO05D008895 1.3e-29 133.7 118 49.2
Glyma.08G176000 Glycine max HOM05D007082 ORTHO05D008895 2.2e-29 132.9 151 46.4
SEGI_21621 Sequoiadendron giganteum HOM05D007082 ORTHO05D008895 2.9e-29 132.5 151 45.7
Eucgr.L00806 Eucalyptus grandis HOM05D007082 ORTHO05D008895 5.0e-29 131.7 149 43.6
Gohir.A07G077800 Gossypium hirsutum HOM05D007082 ORTHO05D008895 1.1e-28 130.6 149 43.0
Sc05g0001360 Simmondsia chinensis HOM05D007082 ORTHO05D008895 1.1e-28 130.6 144 54.9
BolC8t47080H Brassica oleracea HOM05D007082 ORTHO05D008895 2.5e-28 129.4 150 46.0
C08p02850 Brassica napus HOM05D007082 ORTHO05D008895 9.3e-28 127.5 122 48.4
Os03g0366900 Oryza sativa ssp. japonica HOM05D007082 ORTHO05D008895 1.2e-27 127.1 151 46.4
Zm00001eb394240 Zea mays HOM05D007082 ORTHO05D008895 2.7e-27 125.9 150 46.0
MD15G1065600 Malus domestica HOM05D007082 ORTHO05D008895 7.9e-27 124.4 123 48.8
Phvul.003G015400 Phaseolus vulgaris HOM05D007082 ORTHO05D008895 7.9e-27 124.4 148 48.6
BcaB03g13405 Brassica carinata HOM05D007082 ORTHO05D008895 1.3e-26 123.6 117 47.0
Lj3g0026065 Lotus japonicus HOM05D007082 ORTHO05D008895 2.5e-25 119.4 119 47.9
Mapoly0041s0121 Marchantia polymorpha HOM05D007082 ORTHO05D008895 3.3e-25 119.0 151 38.4
Aqoxy5G02465 Aquilegia oxysepala HOM05D007082 ORTHO05D008895 2.4e-23 112.8 154 46.1
Pp3c1_6180 Physcomitrium patens HOM05D007082 ORTHO05D008895 4.1e-23 112.1 149 38.3
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 4.1e-23 112.1 150 44.0
ATR0580G091 Amborella trichopoda HOM05D007082 ORTHO05D008895 1.1e-20 104.0 150 40.7
AagrBONN_evm.TU.Sc2ySwM_117.1416 Anthoceros agrestis HOM05D007082 ORTHO05D008895 3.0e-18 95.9 123 36.6
MCO14G264 Micromonas commoda HOM05D007082 ORTHO05D008895 9.1e-15 84.3 121 37.2
Medtr5g020340 Medicago truncatula HOM05D000096 ORTHO05D008895 5.9e-14 81.6 116 38.8
Actinidia09115 Actinidia chinensis HOM05D007082 ORTHO05D008895 5.5e-12 75.1 56 55.4
SMO307G0023 Selaginella moellendorffii HOM05D007082 ORTHO05D008895 1.0e-10 70.9 101 35.6
CAN.G308.33 Capsicum annuum HOM05D002728 ORTHO05D002874 8.2e-08 61.2 142 27.5
PGSC0003DMG403013782 Solanum tuberosum HOM05D002728 ORTHO05D002874 1.4e-07 60.5 142 26.8
Duzib168G0477 Durio zibethinus HOM05D002728 ORTHO05D002874 1.8e-07 60.1 142 24.6
Nitab4.5_0004944g0050 Nicotiana tabacum HOM05D002728 ORTHO05D002874 1.8e-07 60.1 142 26.8
Thecc.09G005900 Theobroma cacao HOM05D002728 ORTHO05D002874 1.8e-07 60.1 142 24.6
Nitab4.5_0006838g0010 Nicotiana tabacum HOM05D002728 ORTHO05D002874 2.4e-07 59.7 142 26.8
HPP92_022513 Vanilla planifolia HOM05D002728 ORTHO05D002874 4.1e-07 58.9 148 27.7
AL4G14970 Arabidopsis lyrata HOM05D002728 ORTHO05D002874 7.0e-07 58.2 142 26.8
Cc06_g06720 Coffea canephora HOM05D002728 ORTHO05D002874 7.0e-07 58.2 142 24.6
TAR626G0658 Trochodendron aralioides HOM05D002728 ORTHO05D002874 9.1e-07 57.8 142 26.1
Solyc07g018300.3 Solanum lycopersicum HOM05D002728 ORTHO05D002874 1.2e-06 57.4 142 26.8
Sopen07g007450 Solanum pennellii HOM05D002728 ORTHO05D002874 1.2e-06 57.4 142 26.8
Lsat_1_v5_gn_1_95140 Lactuca sativa HOM05D002728 ORTHO05D002874 1.6e-06 57.0 142 28.2
Sc06g0001190 Simmondsia chinensis HOM05D002728 ORTHO05D002874 1.6e-06 57.0 127 27.6
BcaC02g08447 Brassica carinata HOM05D002728 ORTHO05D002874 3.5e-06 55.8 142 24.6
C04p54120 Brassica napus HOM05D002728 ORTHO05D002874 3.5e-06 55.8 142 24.6
BolC4t26964H Brassica oleracea HOM05D002728 ORTHO05D002874 3.5e-06 55.8 142 24.6
BraA04t17490Z Brassica rapa HOM05D002728 ORTHO05D002874 3.5e-06 55.8 142 24.6
Carub.0004s0383 Capsella rubella HOM05D002728 ORTHO05D002874 3.5e-06 55.8 116 26.7
PRCOL_00001098 Prasinoderma coloniale HOM05D007082 ORTHO05D008895 3.5e-06 55.8 120 34.2
BcaB06g27981 Brassica carinata HOM05D002728 ORTHO05D002874 4.5e-06 55.5 142 24.6
A04p18810 Brassica napus HOM05D002728 ORTHO05D002874 4.5e-06 55.5 142 24.6
Thhalv10021296m.g Eutrema salsugineum HOM05D002728 ORTHO05D002874 4.5e-06 55.5 138 27.5
HanXRQChr01g0020741 Helianthus annuus HOM05D002728 ORTHO05D002874 4.5e-06 55.5 145 28.3
Sp3g01980 Schrenkiella parvula HOM05D002728 ORTHO05D002874 4.5e-06 55.5 138 27.5
Sp4g03490 Schrenkiella parvula HOM05D002728 ORTHO05D002874 4.5e-06 55.5 142 24.6
Atru.chr7.2627 Acer truncatum HOM05D002728 ORTHO05D002874 5.9e-06 55.1 142 24.6
Ah.11g043690 Amaranthus hybridus HOM05D002728 ORTHO05D002874 5.9e-06 55.1 138 26.8
CARHR076950 Cardamine hirsuta HOM05D002728 ORTHO05D002874 5.9e-06 55.1 142 26.8
Thhalv10000282m.g Eutrema salsugineum HOM05D002728 ORTHO05D002874 7.7e-06 54.7 116 28.4
Rhsim03G0264700 Rhododendron simsii HOM05D002728 ORTHO05D002874 7.7e-06 54.7 142 26.8


User provided reference genes

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