Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc04g0003810 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.7e-154 549.3 276 100.0
Sc09g0006480 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.5e-62 243.8 155 80.0
Sc07g0004700 Simmondsia chinensis HOM05D012448 ORTHO05D011165 8.7e-58 228.0 176 70.5
Sc22g0003270 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.1e-41 174.5 159 62.3
Sc11g0004550 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.4e-36 157.5 137 64.2
Sc12g0007940 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.5e-33 147.5 110 69.1
Sc03g0007670 Simmondsia chinensis HOM05D012448 ORTHO05D011165 4.1e-31 139.4 148 52.0
Sc08g0005810 Simmondsia chinensis HOM05D012448 ORTHO05D011165 5.9e-30 135.6 124 56.5
Sc18g0004540 Simmondsia chinensis HOM05D012448 ORTHO05D011165 9.4e-28 128.3 132 50.8
Sc14g0005430 Simmondsia chinensis HOM05D012448 ORTHO05D011165 2.1e-27 127.1 113 62.8
Sc26g0003240 Simmondsia chinensis HOM05D012448 ORTHO05D011165 3.6e-27 126.3 132 53.8
Sc21g0004200 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.6e-19 100.9 83 56.6
Sc15g0003120 Simmondsia chinensis HOM05D003387 ORTHO05D011165 5.7e-17 92.4 104 48.1
Sc03g0005120 Simmondsia chinensis HOM05D015224 ORTHO05D011165 2.4e-15 87.0 139 38.1
Sc16g0004600 Simmondsia chinensis HOM05D008654 ORTHO05D011165 9.1e-15 85.1 76 51.3
Sc20g0003080 Simmondsia chinensis HOM05D012448 ORTHO05D011165 1.6e-14 84.3 82 46.3
Sc16g0004730 Simmondsia chinensis HOM05D003387 ORTHO05D011165 3.5e-14 83.2 137 38.7
Sc04g0006840 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.3e-13 81.3 77 44.2
Sc13g0008890 Simmondsia chinensis HOM05D031019 ORTHO05D011165 1.3e-13 81.3 75 49.3
Sc26g0003450 Simmondsia chinensis HOM05D031019 ORTHO05D011165 3.8e-13 79.7 81 43.2
Sc21g0003950 Simmondsia chinensis HOM05D015224 ORTHO05D011165 6.5e-13 79.0 79 49.4
Sc18g0004320 Simmondsia chinensis HOM05D031019 ORTHO05D011165 1.1e-12 78.2 86 39.5
Sc25g0003800 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.2e-11 74.7 149 32.2
Sc25g0001610 Simmondsia chinensis HOM05D015224 ORTHO05D011165 1.6e-11 74.3 82 45.1
Sc02g0004440 Simmondsia chinensis HOM05D003387 ORTHO05D011165 3.6e-11 73.2 75 45.3
Sc12g0007970 Simmondsia chinensis HOM05D003387 ORTHO05D011165 4.7e-11 72.8 83 44.6
Sc07g0005590 Simmondsia chinensis HOM05D003387 ORTHO05D011165 8.0e-11 72.0 80 41.2
Sc11g0003900 Simmondsia chinensis HOM05D015224 ORTHO05D011165 1.8e-10 70.9 80 50.0
Sc01g0004380 Simmondsia chinensis HOM05D031019 ORTHO05D011165 2.3e-10 70.5 75 41.3
Sc07g0005580 Simmondsia chinensis HOM05D003387 ORTHO05D011165 3.0e-10 70.1 80 40.0
Sc17g0002610 Simmondsia chinensis HOM05D003387 ORTHO05D011165 8.8e-10 68.6 96 34.4
Sc22g0004350 Simmondsia chinensis HOM05D028099 ORTHO05D011165 8.8e-10 68.6 75 42.7
Sc12g0007750 Simmondsia chinensis HOM05D015224 ORTHO05D011165 1.2e-09 68.2 81 42.0
Sc09g0007220 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.5e-09 67.8 76 44.7
Os01g0867800 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D005400 2.6e-09 67.0 78 47.4
Sc16g0004050 Simmondsia chinensis HOM05D003387 ORTHO05D005400 4.4e-09 66.2 126 34.9
Hund19618 Selenicereus undatus HOM05D003387 ORTHO05D005400 7.5e-09 65.5 78 42.3
Sc09g0006000 Simmondsia chinensis HOM05D015224 ORTHO05D388293 9.8e-09 65.1 92 37.0
Eucgr.F04205 Eucalyptus grandis HOM05D003387 ORTHO05D005400 2.2e-08 63.9 78 44.9
Os05g0437300 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D005400 2.2e-08 63.9 122 32.8
Ah.05g168100 Amaranthus hybridus HOM05D003387 ORTHO05D005400 2.8e-08 63.5 78 43.6
EL10Ac6g15237 Beta vulgaris HOM05D003387 ORTHO05D005400 2.8e-08 63.5 78 41.0
QL02p037738 Quercus lobata HOM05D003387 ORTHO05D005400 2.8e-08 63.5 78 44.9
QL02p038708 Quercus lobata HOM05D003387 ORTHO05D005400 2.8e-08 63.5 78 44.9
Zm00001eb289150 Zea mays HOM05D003387 ORTHO05D005400 2.8e-08 63.5 150 30.7
Glyma.10G223300 Glycine max HOM05D003387 ORTHO05D005400 3.7e-08 63.2 78 44.9
Glyma.20G168400 Glycine max HOM05D003387 ORTHO05D005400 3.7e-08 63.2 78 44.9
VMungo0464G0875 Vigna mungo HOM05D003387 ORTHO05D005400 3.7e-08 63.2 78 46.2
Zm00001eb348540 Zea mays HOM05D003387 ORTHO05D005400 3.7e-08 63.2 84 42.9
Ah.02g123810 Amaranthus hybridus HOM05D003387 ORTHO05D005400 4.8e-08 62.8 78 42.3
Aqoxy2G00397 Aquilegia oxysepala HOM05D003387 ORTHO05D005400 4.8e-08 62.8 78 44.9
Lj5g0027187 Lotus japonicus HOM05D003387 ORTHO05D005400 4.8e-08 62.8 78 43.6
Psat6g192160 Pisum sativum HOM05D003387 ORTHO05D005400 4.8e-08 62.8 127 35.4
Sc07g0005070 Simmondsia chinensis HOM05D003387 ORTHO05D011165 4.8e-08 62.8 75 42.7
Cfa002795 Carpinus fangiana HOM05D003387 ORTHO05D005400 6.3e-08 62.4 78 44.9
SMO146G0032 Selaginella moellendorffii HOM05D003387 ORTHO05D005400 6.3e-08 62.4 78 43.6
ATR1126G056 Amborella trichopoda HOM05D003387 ORTHO05D005400 8.3e-08 62.0 84 42.9
arahy.Tifrunner.gnm1.ann1.LGJ4PH Arachis hypogaea HOM05D003387 ORTHO05D005400 8.3e-08 62.0 78 42.3
arahy.Tifrunner.gnm1.ann1.RF14FM Arachis hypogaea HOM05D003387 ORTHO05D005400 8.3e-08 62.0 78 42.3
CiPaw.16G009800 Carya illinoinensis HOM05D003387 ORTHO05D005400 8.3e-08 62.0 78 43.6
HanXRQChr05g0144181 Helianthus annuus HOM05D003387 ORTHO05D005400 8.3e-08 62.0 101 36.6
Ca_10675_v3 Cicer arietinum L. HOM05D003387 ORTHO05D005400 1.1e-07 61.6 78 43.6
Glyma.02G080500 Glycine max HOM05D003387 ORTHO05D005400 1.1e-07 61.6 78 44.9
Glyma.16G165000 Glycine max HOM05D003387 ORTHO05D005400 1.1e-07 61.6 78 44.9
Phvul.004G092400 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 1.1e-07 61.6 78 44.9
TAR628G0869 Trochodendron aralioides HOM05D003387 ORTHO05D005400 1.1e-07 61.6 84 44.0
GSVIVG01022282001 Vitis vinifera HOM05D003387 ORTHO05D005400 1.1e-07 61.6 78 44.9
arahy.Tifrunner.gnm1.ann1.9CFF48 Arachis hypogaea HOM05D003387 ORTHO05D005400 1.4e-07 61.2 78 43.6
arahy.Tifrunner.gnm1.ann1.K61U57 Arachis hypogaea HOM05D003387 ORTHO05D005400 1.4e-07 61.2 78 43.6
Medtr1g098530 Medicago truncatula HOM05D003387 ORTHO05D005400 1.4e-07 61.2 78 42.3
Nn5g28791 Nelumbo nucifera HOM05D003387 ORTHO05D005400 1.4e-07 61.2 78 44.9
CSS0049572 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D005400 1.8e-07 60.8 78 44.9
CiPaw.04G088200 Carya illinoinensis HOM05D003387 ORTHO05D005400 1.8e-07 60.8 92 38.0
CiPaw.15G014400 Carya illinoinensis HOM05D003387 ORTHO05D005400 1.8e-07 60.8 78 42.3
PSO541G1407 Papaver somniferum HOM05D003387 ORTHO05D005400 1.8e-07 60.8 137 32.1
Psat1g100400 Pisum sativum HOM05D003387 ORTHO05D005400 1.8e-07 60.8 78 43.6
QL06p031237 Quercus lobata HOM05D003387 ORTHO05D005400 1.8e-07 60.8 78 43.6
TPR.G17034 Trifolium pratense HOM05D003387 ORTHO05D005400 1.8e-07 60.8 78 42.3
Phvul.007G081900 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 2.4e-07 60.5 78 43.6
GSVIVG01034558001 Vitis vinifera HOM05D003387 ORTHO05D005400 2.4e-07 60.5 78 44.9
Lj8C37T13 Lonicera japonica HOM05D003387 ORTHO05D235663 3.1e-07 60.1 90 37.8
PSO700G0143 Papaver somniferum HOM05D003387 ORTHO05D005400 3.1e-07 60.1 126 34.9
TWI34G1705 Tripterygium wilfordii HOM05D003387 ORTHO05D005400 3.1e-07 60.1 78 44.9
VMungo0720G1662 Vigna mungo HOM05D003387 ORTHO05D005400 3.1e-07 60.1 78 42.3
CSS0039159 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D005400 4.1e-07 59.7 78 43.6
Haze_25093 Corylus avellana HOM05D003387 ORTHO05D005400 4.1e-07 59.7 78 43.6
Migut.K00003 Erythranthe guttata HOM05D003387 ORTHO05D005400 4.1e-07 59.7 78 44.9
Manes.18G093400 Manihot esculenta HOM05D003387 ORTHO05D005400 4.1e-07 59.7 78 43.6
PSO675G7282 Papaver somniferum HOM05D003387 ORTHO05D005400 4.1e-07 59.7 126 34.1
SEGI_27673 Sequoiadendron giganteum HOM05D003387 ORTHO05D005400 4.1e-07 59.7 84 40.5
BcaB04g17624 Brassica carinata HOM05D003387 ORTHO05D005400 5.4e-07 59.3 78 43.6
Duzib093G0739 Durio zibethinus HOM05D003387 ORTHO05D005400 5.4e-07 59.3 78 43.6
ECA232G0053 Erigeron canadensis HOM05D003387 ORTHO05D005400 5.4e-07 59.3 101 36.6
Eucgr.F02695 Eucalyptus grandis HOM05D003387 ORTHO05D005400 5.4e-07 59.3 78 43.6
Lalb_Chr02g0141481 Lupinus albus HOM05D003387 ORTHO05D005400 5.4e-07 59.3 78 41.0
Lalb_Chr19g0130201 Lupinus albus HOM05D003387 ORTHO05D005400 5.4e-07 59.3 78 42.3
Hund26682 Selenicereus undatus HOM05D003387 ORTHO05D005400 5.4e-07 59.3 78 43.6
Thecc.08G155500 Theobroma cacao HOM05D003387 ORTHO05D005400 5.4e-07 59.3 78 43.6
TAR376G0277 Trochodendron aralioides HOM05D003387 ORTHO05D005400 5.4e-07 59.3 78 44.9
Atru.chr13.2064 Acer truncatum HOM05D003387 ORTHO05D005400 7.0e-07 58.9 78 44.9
CBR_g7995 Chara braunii HOM05D003387 ORTHO05D005400 7.0e-07 58.9 78 41.0
Ciclev10001148m.g Citrus clementina HOM05D003387 ORTHO05D005400 7.0e-07 58.9 78 43.6
FvH4_2g13280 Fragaria vesca HOM05D003387 ORTHO05D005400 7.0e-07 58.9 78 43.6
FAN20G0358 Fragaria x ananassa HOM05D003387 ORTHO05D005400 7.0e-07 58.9 78 43.6
FAN24G3173 Fragaria x ananassa HOM05D003387 ORTHO05D005400 7.0e-07 58.9 78 43.6
MD04G1044700 Malus domestica HOM05D003387 ORTHO05D005400 7.0e-07 58.9 78 43.6
RcHm_v2.0_Chr6g0274691 Rosa chinensis HOM05D003387 ORTHO05D005400 7.0e-07 58.9 78 43.6
Sp1g32390 Schrenkiella parvula HOM05D003387 ORTHO05D005400 7.0e-07 58.9 78 42.3
CANSAT25G0465 Cannabis sativa HOM05D003387 ORTHO05D005400 9.1e-07 58.5 78 42.3
Cfa018305 Carpinus fangiana HOM05D003387 ORTHO05D005400 9.1e-07 58.5 78 41.0
Ca_04511_v3 Cicer arietinum L. HOM05D003387 ORTHO05D005400 9.1e-07 58.5 78 43.6
Thhalv10004261m.g Eutrema salsugineum HOM05D003387 ORTHO05D005400 9.1e-07 58.5 78 41.0
MBI16_g07738_MAGBIO Magnolia biondii HOM05D003387 ORTHO05D005400 9.1e-07 58.5 77 45.5
Nn1g06041 Nelumbo nucifera HOM05D003387 ORTHO05D005400 9.1e-07 58.5 78 41.0
Prupe.8G036700 Prunus persica HOM05D003387 ORTHO05D005400 9.1e-07 58.5 78 42.3
TWI60G0696 Tripterygium wilfordii HOM05D003387 ORTHO05D005400 9.1e-07 58.5 78 44.9
Aa31LG6G9950 Aethionema arabicum HOM05D003387 ORTHO05D005400 1.2e-06 58.2 78 41.0
ATR0115G003 Amborella trichopoda HOM05D003387 ORTHO05D005400 1.2e-06 58.2 84 41.7
AL1G51590 Arabidopsis lyrata HOM05D003387 ORTHO05D005400 1.2e-06 58.2 78 41.0
AT1G43190 Arabidopsis thaliana HOM05D003387 ORTHO05D005400 1.2e-06 58.2 78 41.0
BcaC07g37311 Brassica carinata HOM05D003387 ORTHO05D005400 1.2e-06 58.2 78 43.6
A08p06460 Brassica napus HOM05D003387 ORTHO05D005400 1.2e-06 58.2 78 43.6
C08p07450 Brassica napus HOM05D003387 ORTHO05D005400 1.2e-06 58.2 78 43.6
BolC8t47590H Brassica oleracea HOM05D003387 ORTHO05D005400 1.2e-06 58.2 78 43.6
BraA08t32655Z Brassica rapa HOM05D003387 ORTHO05D005400 1.2e-06 58.2 78 43.6
CARHR035330 Cardamine hirsuta HOM05D003387 ORTHO05D005400 1.2e-06 58.2 78 42.3
Cc04_g09690 Coffea canephora HOM05D003387 ORTHO05D005400 1.2e-06 58.2 78 42.3
Gohir.A02G063500 Gossypium hirsutum HOM05D003387 ORTHO05D005400 1.2e-06 58.2 78 42.3
Gohir.D02G069100 Gossypium hirsutum HOM05D003387 ORTHO05D005400 1.2e-06 58.2 78 42.3
Gorai.005G078200 Gossypium raimondii HOM05D003387 ORTHO05D005400 1.2e-06 58.2 78 42.3
Lalb_Chr06g0161681 Lupinus albus HOM05D003387 ORTHO05D005400 1.2e-06 58.2 78 39.7
Lalb_Chr21g0305541 Lupinus albus HOM05D003387 ORTHO05D005400 1.2e-06 58.2 78 39.7
Potri.002G066000 Populus trichocarpa HOM05D003387 ORTHO05D005400 1.2e-06 58.2 78 42.3
Carub.0001s3449 Capsella rubella HOM05D003387 ORTHO05D005400 1.6e-06 57.8 78 41.0
Medtr6g043520 Medicago truncatula HOM05D003387 ORTHO05D005400 1.6e-06 57.8 78 42.3
Os02g0789700 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D011165 1.6e-06 57.8 95 31.6
Pp3c14_14100 Physcomitrium patens HOM05D003387 ORTHO05D005400 1.6e-06 57.8 78 41.0
Pp3c14_17110 Physcomitrium patens HOM05D003387 ORTHO05D005400 1.6e-06 57.8 78 41.0
Sc23g0004730 Simmondsia chinensis HOM05D015224 ORTHO05D388619 1.6e-06 57.8 84 42.9
vmacro01482 Vaccinium macrocarpon HOM05D003387 ORTHO05D005400 1.6e-06 57.8 78 41.0
Dinv25885 Davidia involucrata HOM05D003387 ORTHO05D005400 2.0e-06 57.4 78 43.6
FAN15G3239 Fragaria x ananassa HOM05D003387 ORTHO05D005400 2.0e-06 57.4 78 42.3
Lj7C377G3 Lonicera japonica HOM05D003387 ORTHO05D005400 2.0e-06 57.4 78 42.3
PGR042G1308 Punica granatum HOM05D003387 ORTHO05D005400 2.0e-06 57.4 78 41.0
SalBow1G1267 Salvia bowleyana HOM05D003387 ORTHO05D005400 2.0e-06 57.4 78 42.3
AagrBONN_evm.TU.Sc2ySwM_368.3328 Anthoceros agrestis HOM05D003387 ORTHO05D005400 2.7e-06 57.0 78 39.7
Lsat_1_v5_gn_9_41940 Lactuca sativa HOM05D003387 ORTHO05D005400 2.7e-06 57.0 78 42.3
Manes.02G181600 Manihot esculenta HOM05D003387 ORTHO05D005400 2.7e-06 57.0 78 42.3
Mapoly0001s0481 Marchantia polymorpha HOM05D003387 ORTHO05D005400 2.7e-06 57.0 94 37.2
Sed0017554 Sechium edule HOM05D003387 ORTHO05D005400 2.7e-06 57.0 78 41.0
Sc23g0004550 Simmondsia chinensis HOM05D015224 ORTHO05D388671 2.7e-06 57.0 84 42.9
SGA_v2.0_scaffold274G46519 Striga asiatica HOM05D003387 ORTHO05D005400 2.7e-06 57.0 132 34.1
THA.LOC104804671 Tarenaya hassleriana HOM05D003387 ORTHO05D005400 2.7e-06 57.0 78 39.7
HPP92_002768 Vanilla planifolia HOM05D003387 ORTHO05D005400 2.7e-06 57.0 78 42.3
CDE06G0083 Ceratophyllum demersum HOM05D003387 ORTHO05D005400 3.5e-06 56.6 84 38.1
Potri.005G194700 Populus trichocarpa HOM05D003387 ORTHO05D005400 3.5e-06 56.6 78 39.7
DCAR_014445 Daucus carota HOM05D003387 ORTHO05D005400 4.5e-06 56.2 78 41.0
Duzib116G0668 Durio zibethinus HOM05D003387 ORTHO05D005400 4.5e-06 56.2 78 42.3
Hund01476 Selenicereus undatus HOM05D008449 ORTHO05D010615 4.5e-06 56.2 63 44.4
Sopen12g010100 Solanum pennellii HOM05D003387 ORTHO05D005400 4.5e-06 56.2 78 41.0
PGSC0003DMG400018824 Solanum tuberosum HOM05D003387 ORTHO05D005400 4.5e-06 56.2 78 41.0
ClCG08G002590 Citrullus lanatus HOM05D003387 ORTHO05D005400 5.9e-06 55.8 78 41.0
MELO3C024993.2 Cucumis melo HOM05D003387 ORTHO05D005400 5.9e-06 55.8 78 41.0
CsaV3_6G002770 Cucumis sativus L. HOM05D003387 ORTHO05D005400 5.9e-06 55.8 78 41.0
Sabra05G0148200 Salix brachista HOM05D003387 ORTHO05D005400 5.9e-06 55.8 84 39.3
Solyc10g080720.2 Solanum lycopersicum HOM05D003387 ORTHO05D005400 5.9e-06 55.8 78 41.0
Sopen10g031260 Solanum pennellii HOM05D003387 ORTHO05D005400 5.9e-06 55.8 78 41.0
THA.LOC104809206 Tarenaya hassleriana HOM05D003387 ORTHO05D005400 5.9e-06 55.8 78 39.7
TPR.G28008 Trifolium pratense HOM05D003387 ORTHO05D005400 5.9e-06 55.8 78 41.0
Lj2g0008478 Lotus japonicus HOM05D003387 ORTHO05D005400 7.7e-06 55.5 78 42.3
Peaxi162Scf00076g00821 Petunia axillaris HOM05D003387 ORTHO05D005400 7.7e-06 55.5 78 41.0
Hund04197 Selenicereus undatus HOM05D008449 ORTHO05D010615 7.7e-06 55.5 75 40.0
PGSC0003DMG400023660 Solanum tuberosum HOM05D003387 ORTHO05D005400 7.7e-06 55.5 78 41.0


User provided reference genes

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