Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 1.1e-161 573.2 284 100.0
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 2.0e-73 280.0 279 54.5
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 6.8e-66 255.0 257 52.1
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 1.3e-61 240.7 272 47.1
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 3.4e-57 226.1 266 47.0
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 1.3e-56 224.2 276 46.7
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 4.2e-55 219.2 302 44.4
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 7.1e-55 218.4 278 45.3
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 3.0e-53 213.0 299 43.5
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 3.9e-53 212.6 279 43.4
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 2.1e-51 206.8 246 48.4
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 6.2e-51 205.3 285 44.6
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 1.8e-50 203.8 307 43.0
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 3.1e-50 203.0 296 42.2
Peaxi162Scf00411g00117 Petunia axillaris HOM05D006496 ORTHO05D008390 6.7e-45 185.3 189 52.9
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 2.5e-44 183.3 271 41.7
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 2.5e-44 183.3 239 46.0
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 3.3e-44 183.0 321 37.7
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 1.1e-42 177.9 272 42.3
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 4.9e-40 169.1 273 39.9
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 4.9e-40 169.1 180 50.6
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 1.1e-39 167.9 259 39.0
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 4.6e-38 162.5 273 37.4
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 6.0e-38 162.2 274 37.2
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 2.3e-37 160.2 297 36.4
MSTRG.21183 Avicennia marina HOM05D006496 ORTHO05D008390 2.5e-36 156.8 153 54.2
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 3.7e-35 152.9 223 40.4
Solyc11g073080.3 Solanum lycopersicum HOM05D006496 ORTHO05D008390 1.1e-34 151.4 196 43.9
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 2.4e-34 150.2 281 34.9
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 2.4e-34 150.2 298 35.9
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 3.1e-34 149.8 267 36.3
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 4.5e-33 146.0 282 35.5
MSTRG.21184 Avicennia marina HOM05D006496 ORTHO05D008390 5.9e-33 145.6 117 64.1
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 3.6e-30 136.3 257 35.4
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 4.6e-30 136.0 270 34.4
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 5.7e-28 129.0 252 33.3
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 1.6e-27 127.5 288 33.7
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 2.8e-27 126.7 269 34.2
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 3.7e-27 126.3 302 32.1
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 4.8e-27 125.9 266 34.6
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 1.1e-26 124.8 271 33.9
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 1.4e-26 124.4 276 33.3
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 2.4e-26 123.6 284 33.5
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 2.4e-26 123.6 284 33.5
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 4.1e-26 122.9 282 33.3
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 9.0e-26 121.7 238 34.0
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 1.5e-25 120.9 263 33.5
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.4e-25 119.8 303 32.0
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 5.9e-25 119.0 275 34.5
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 2.2e-24 117.1 279 30.8
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 3.8e-24 116.3 291 29.9
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 1.4e-23 114.4 239 33.9
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 1.9e-23 114.0 253 32.8
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 1.9e-23 114.0 248 29.8
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 4.2e-23 112.8 227 34.4
Dinv06145 Davidia involucrata HOM05D006496 ORTHO05D008390 1.2e-22 111.3 175 44.0
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 1.2e-22 111.3 284 31.0
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.1e-22 110.5 296 28.7
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 3.6e-22 109.8 246 31.7
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 4.6e-22 109.4 237 33.3
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 1.4e-21 107.8 237 31.2
CSS0005064 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 1.8e-21 107.5 129 45.0
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 1.8e-21 107.5 237 32.1
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 3.9e-21 106.3 261 31.0
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 5.1e-21 105.9 237 31.2
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 8.8e-21 105.1 329 29.5
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 8.8e-21 105.1 329 29.5
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 5.7e-20 102.4 246 30.1
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 7.4e-20 102.1 237 31.2
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 1.3e-19 101.3 237 30.8
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 2.2e-19 100.5 237 30.4
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 2.2e-19 100.5 329 28.3
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 3.7e-19 99.8 169 37.3
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 6.3e-19 99.0 269 29.7
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 1.1e-18 98.2 237 30.8
TPR.G34315 Trifolium pratense HOM05D006496 ORTHO05D008390 1.4e-18 97.8 330 26.4
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 2.4e-18 97.1 185 37.3
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 4.1e-18 96.3 237 30.8
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 1.5e-17 94.4 314 27.4
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.5e-17 94.4 285 29.5
Sc06g0008220 Simmondsia chinensis HOM05D006496 ORTHO05D008390 1.5e-17 94.4 161 36.6
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 1.7e-16 90.9 326 27.3
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 2.2e-16 90.5 244 29.5
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 2.2e-16 90.5 160 36.2
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 2.9e-16 90.1 245 28.6
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 3.8e-16 89.7 244 26.6
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 6.5e-16 89.0 270 25.6
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 8.5e-16 88.6 244 29.1
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 1.4e-15 87.8 221 28.1
Dinv06143 Davidia involucrata HOM05D021242 ORTHO05D022491 1.9e-15 87.4 98 50.0
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 2.5e-15 87.0 247 28.3
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 2.5e-15 87.0 190 31.1
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 5.5e-15 85.9 228 26.3
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 7.2e-15 85.5 315 27.3
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 9.4e-15 85.1 234 31.6
Sabra09G0018800 Salix brachista HOM05D006496 ORTHO05D008390 1.6e-14 84.3 281 29.5
Thecc.09G327500 Theobroma cacao HOM05D006496 ORTHO05D008390 1.0e-13 81.6 177 35.0
FvH4_6g13651 Fragaria vesca HOM05D022761 ORTHO05D022494 1.5e-12 77.8 135 33.3
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 2.0e-12 77.4 193 30.1
FAN09G4791 Fragaria x ananassa HOM05D004190 ORTHO05D022494 5.7e-12 75.9 135 32.6
FAN14G3185 Fragaria x ananassa HOM05D022761 ORTHO05D022494 5.7e-12 75.9 135 32.6
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 5.7e-12 75.9 331 26.3
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 3.1e-10 70.1 135 31.9
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 3.1e-10 70.1 195 28.2
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 5.3e-10 69.3 135 31.9
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 4.5e-09 66.2 135 31.1
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 5.9e-09 65.9 140 32.1
Phvul.004G006200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 5.9e-09 65.9 263 25.9
Atru.chr3.3912 Acer truncatum HOM05D004190 ORTHO05D004692 7.7e-09 65.5 149 30.9
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 7.7e-09 65.5 135 31.9
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 7.7e-09 65.5 139 33.1
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 1.3e-08 64.7 135 32.6
CARHR285750 Cardamine hirsuta HOM05D004190 ORTHO05D004692 1.7e-08 64.3 141 34.0
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 1.7e-08 64.3 140 32.9
CDE02G2475 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 2.2e-08 63.9 153 30.7
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 2.2e-08 63.9 156 28.8
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 3.8e-08 63.2 83 41.0
Aqoxy4G02933 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 5.0e-08 62.8 139 34.5
Prupe.6G084500 Prunus persica HOM05D006496 ORTHO05D008390 5.0e-08 62.8 58 51.7
Thhalv10002683m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 6.5e-08 62.4 139 28.1
Lj2C195G2 Lonicera japonica HOM05D003520 ORTHO05D003332 6.5e-08 62.4 158 33.5
Cpa.g.sc190.31 Carica papaya HOM05D006496 ORTHO05D008390 1.1e-07 61.6 260 24.2
PGR119G1862 Punica granatum HOM05D004190 ORTHO05D004692 1.1e-07 61.6 140 29.3
VMungo0464G2068 Vigna mungo HOM05D006496 ORTHO05D008390 1.1e-07 61.6 204 26.5
Sp5g15120 Schrenkiella parvula HOM05D004190 ORTHO05D004692 1.5e-07 61.2 142 26.8
Rhsim13G0195100 Rhododendron simsii HOM05D004190 ORTHO05D004692 2.5e-07 60.5 116 31.9
PGSC0003DMG400024773 Solanum tuberosum HOM05D004190 ORTHO05D004692 2.5e-07 60.5 158 29.7
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 3.2e-07 60.1 43 62.8
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 3.2e-07 60.1 172 31.4
Carub.0005s1285 Capsella rubella HOM05D004190 ORTHO05D004692 4.2e-07 59.7 116 31.0
CAN.G1733.7 Capsicum annuum HOM05D000006 ORTHO05D004030 7.2e-07 58.9 113 32.7
Medtr4g008590 Medicago truncatula HOM05D006496 ORTHO05D008390 7.2e-07 58.9 62 46.8
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 1.2e-06 58.2 157 28.7
arahy.Tifrunner.gnm1.ann1.4RYS79 Arachis hypogaea HOM05D006496 ORTHO05D008390 2.1e-06 57.4 48 60.4
arahy.Tifrunner.gnm1.ann1.7PT1R0 Arachis hypogaea HOM05D006496 ORTHO05D008390 2.1e-06 57.4 48 60.4
VMungo1080G1046 Vigna mungo HOM05D006496 ORTHO05D008390 2.1e-06 57.4 209 26.8
DCAR_002216 Daucus carota HOM05D002742 ORTHO05D002959 3.6e-06 56.6 119 34.5
AT3G46580 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 4.7e-06 56.2 137 28.5
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 4.7e-06 56.2 53 49.1
BcaC09g49754 Brassica carinata HOM05D004190 ORTHO05D004692 6.1e-06 55.8 146 28.1
C01p33300 Brassica napus HOM05D004190 ORTHO05D004692 6.1e-06 55.8 146 28.1
BolC1t03263H Brassica oleracea HOM05D004190 ORTHO05D004692 6.1e-06 55.8 146 28.1
BraA01t02543Z Brassica rapa HOM05D004190 ORTHO05D004692 6.1e-06 55.8 146 28.1
Eucgr.J02050 Eucalyptus grandis HOM05D004190 ORTHO05D004692 6.1e-06 55.8 156 27.6
Actinidia02028 Actinidia chinensis HOM05D003520 ORTHO05D003332 8.0e-06 55.5 185 29.2


User provided reference genes

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