Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra14G0132400 Salix brachista HOM05D006570 ORTHO05D008193 0.0e+00 1175.6 601 100.0
Potri.014G198000 Populus trichocarpa HOM05D006570 ORTHO05D008193 5.0e-252 874.4 601 78.9
Manes.13G058200 Manihot esculenta HOM05D006570 ORTHO05D008193 2.7e-173 612.8 536 61.4
Atru.chr6.3468 Acer truncatum HOM05D006570 ORTHO05D008193 1.4e-169 600.5 515 61.7
Ciclev10015195m.g Citrus clementina HOM05D006570 ORTHO05D008193 2.6e-163 579.7 540 58.1
TWI18G1431 Tripterygium wilfordii HOM05D006570 ORTHO05D008193 1.4e-161 573.9 584 56.5
Duzib133G0843 Durio zibethinus HOM05D006570 ORTHO05D008193 3.5e-160 569.3 586 56.3
Cfa006298 Carpinus fangiana HOM05D006570 ORTHO05D008193 1.7e-159 567.0 524 57.3
Haze_04512 Corylus avellana HOM05D006570 ORTHO05D008193 2.3e-159 566.6 515 58.4
Thecc.01G203700 Theobroma cacao HOM05D006570 ORTHO05D008193 2.9e-159 566.2 536 59.3
Gohir.D07G093500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 4.7e-157 558.9 529 57.7
Gorai.001G100200 Gossypium raimondii HOM05D006570 ORTHO05D008193 4.7e-157 558.9 529 57.7
Cpa.g.sc8.9 Carica papaya HOM05D006570 ORTHO05D008193 1.4e-156 557.4 554 57.2
Ca_23570_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 5.7e-155 552.0 549 55.2
Ca_23579_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 5.7e-155 552.0 549 55.2
Gohir.A07G088500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 5.7e-155 552.0 531 57.6
Dinv28772 Davidia involucrata HOM05D006570 ORTHO05D008193 2.2e-154 550.1 535 55.7
COL.COLO4_19720 Corchorus olitorius HOM05D006570 ORTHO05D008193 5.4e-153 545.4 490 59.8
Lj2A1109T67 Lonicera japonica HOM05D006570 ORTHO05D008193 5.4e-153 545.4 545 54.9
Lj3g0023743 Lotus japonicus HOM05D006570 ORTHO05D008193 1.2e-152 544.3 544 53.7
CiPaw.07G077200 Carya illinoinensis HOM05D006570 ORTHO05D008193 2.0e-152 543.5 543 55.6
Prupe.6G214800 Prunus persica HOM05D006570 ORTHO05D008193 4.5e-152 542.3 510 57.1
RcHm_v2.0_Chr5g0052821 Rosa chinensis HOM05D006570 ORTHO05D008193 4.5e-152 542.3 534 56.0
CANSAT01G0840 Cannabis sativa HOM05D006570 ORTHO05D008193 1.0e-151 541.2 523 55.3
Medtr8g028105 Medicago truncatula HOM05D006570 ORTHO05D008193 4.3e-150 535.8 553 53.7
Glyma.07G059700 Glycine max HOM05D006570 ORTHO05D008193 4.7e-149 532.3 517 56.1
Phvul.010G109900 Phaseolus vulgaris HOM05D006570 ORTHO05D008193 4.7e-149 532.3 544 55.1
FvH4_3g28500 Fragaria vesca HOM05D006570 ORTHO05D008193 8.0e-149 531.6 574 53.0
TPR.G5123 Trifolium pratense HOM05D006570 ORTHO05D008193 1.0e-148 531.2 559 50.8
TAR362G0032 Trochodendron aralioides HOM05D006570 ORTHO05D008193 1.0e-148 531.2 532 55.1
Actinidia11648 Actinidia chinensis HOM05D006570 ORTHO05D008193 2.6e-147 526.6 511 56.2
arahy.Tifrunner.gnm1.ann1.L2UBUE Arachis hypogaea HOM05D006570 ORTHO05D008193 2.2e-146 523.5 573 53.2
MD15G1141300 Malus domestica HOM05D006570 ORTHO05D008193 2.2e-146 523.5 501 57.1
VMungo0331G0798 Vigna mungo HOM05D006570 ORTHO05D008193 2.2e-146 523.5 542 54.8
Lalb_Chr10g0100201 Lupinus albus HOM05D006570 ORTHO05D008193 4.9e-146 522.3 530 52.8
FAN21G3910 Fragaria x ananassa HOM05D006570 ORTHO05D008193 8.3e-146 521.5 538 54.1
Oeu020442.2 Olea europaea HOM05D006570 ORTHO05D008193 1.8e-145 520.4 559 53.0
Ah.11g050650 Amaranthus hybridus HOM05D006570 ORTHO05D008193 4.1e-145 519.2 564 51.2
Aa31sc565G50 Aethionema arabicum HOM05D006570 ORTHO05D008193 4.6e-144 515.8 546 52.4
arahy.Tifrunner.gnm1.ann1.N5JW36 Arachis hypogaea HOM05D006570 ORTHO05D008193 5.9e-144 515.4 574 51.4
PGR083G1749 Punica granatum HOM05D006570 ORTHO05D008193 1.7e-143 513.8 528 57.8
vmacro02851 Vaccinium macrocarpon HOM05D006570 ORTHO05D008193 1.1e-142 511.1 536 53.7
AL9U11910 Arabidopsis lyrata HOM05D006570 ORTHO05D008193 1.2e-141 507.7 520 53.3
Hma1.2p1_0834F.1_g225720 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 3.6e-141 506.1 489 55.8
CsaV3_6G007600 Cucumis sativus L. HOM05D006570 ORTHO05D008193 4.7e-141 505.8 550 51.8
BcaB03g16147 Brassica carinata HOM05D006570 ORTHO05D008193 6.2e-141 505.4 525 53.0
SalBow6G3933 Salvia bowleyana HOM05D006570 ORTHO05D008193 3.1e-140 503.1 542 52.6
Carub.0007s3008 Capsella rubella HOM05D006570 ORTHO05D008193 4.0e-140 502.7 546 51.6
BcaC02g09469 Brassica carinata HOM05D006570 ORTHO05D008193 5.2e-140 502.3 529 52.0
Sopen09g012610 Solanum pennellii HOM05D006570 ORTHO05D008193 8.9e-140 501.5 558 51.4
SalBow2G2795 Salvia bowleyana HOM05D006570 ORTHO05D008193 1.2e-139 501.1 544 52.2
Solyc09g018850.3 Solanum lycopersicum HOM05D006570 ORTHO05D008193 1.5e-139 500.7 535 52.1
C04p43140 Brassica napus HOM05D006570 ORTHO05D008193 4.4e-139 499.2 578 49.5
Aqoxy7G03970 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 9.8e-139 498.0 553 49.4
Aqoxy1G01428 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 1.3e-138 497.7 553 49.7
Sp7g09050 Schrenkiella parvula HOM05D006570 ORTHO05D008193 1.3e-138 497.7 535 51.8
GSVIVG01004124001 Vitis vinifera HOM05D006570 ORTHO05D008193 1.7e-138 497.3 557 51.2
AT4G12740 Arabidopsis thaliana HOM05D006570 ORTHO05D008193 2.2e-138 496.9 522 53.1
THA.LOC104815379 Tarenaya hassleriana HOM05D006570 ORTHO05D008193 4.9e-138 495.7 526 53.4
EL10Ac5g10565 Beta vulgaris HOM05D006570 ORTHO05D008193 8.3e-138 495.0 531 51.8
Migut.D00755 Erythranthe guttata HOM05D006570 ORTHO05D008193 1.4e-137 494.2 531 52.4
ClCG06G001630 Citrullus lanatus HOM05D006570 ORTHO05D008193 1.9e-137 493.8 551 51.0
Cc01_g15710 Coffea canephora HOM05D006570 ORTHO05D008193 1.9e-137 493.8 547 52.7
AUR62028620 Chenopodium quinoa HOM05D006570 ORTHO05D008193 1.2e-136 491.1 544 50.7
PGSC0003DMG400020287 Solanum tuberosum HOM05D006570 ORTHO05D008193 1.2e-136 491.1 538 50.9
Thhalv10024575m.g Eutrema salsugineum HOM05D006570 ORTHO05D008193 2.3e-135 486.9 511 51.9
A04p09180 Brassica napus HOM05D006570 ORTHO05D008193 5.0e-135 485.7 558 49.1
HanXRQChr16g0508391 Helianthus annuus HOM05D006570 ORTHO05D008193 6.6e-135 485.3 550 49.8
PSO170G2695 Papaver somniferum HOM05D006570 ORTHO05D008193 6.6e-135 485.3 539 50.8
AUR62008045 Chenopodium quinoa HOM05D006570 ORTHO05D008193 1.5e-134 484.2 545 51.2
AUR62032342 Chenopodium quinoa HOM05D006570 ORTHO05D008193 1.5e-134 484.2 545 51.2
Nitab4.5_0005967g0010 Nicotiana tabacum HOM05D006570 ORTHO05D008193 1.5e-134 484.2 521 53.2
CARHR218120 Cardamine hirsuta HOM05D006570 ORTHO05D008193 3.3e-134 483.0 511 51.9
Psat4g158840 Pisum sativum HOM05D006570 ORTHO05D008193 6.2e-133 478.8 479 53.9
SHI10196 Sapria himalayana HOM05D006570 ORTHO05D008193 2.3e-132 476.9 535 48.8
BolC4t25891H Brassica oleracea HOM05D006570 ORTHO05D008193 8.9e-132 474.9 572 47.9
Sc05g0001500 Simmondsia chinensis HOM05D006570 ORTHO05D008193 2.6e-131 473.4 569 48.0
Peaxi162Scf12724g00014 Petunia axillaris HOM05D006570 ORTHO05D008193 2.2e-130 470.3 568 49.1
Hund09495 Selenicereus undatus HOM05D006570 ORTHO05D008193 2.2e-130 470.3 507 50.9
ECA236G3480 Erigeron canadensis HOM05D006570 ORTHO05D008193 4.9e-130 469.2 529 50.7
MBI10_g46813_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 7.1e-129 465.3 545 49.5
Nitab4.5_0009028g0030 Nicotiana tabacum HOM05D006570 ORTHO05D008193 7.1e-129 465.3 559 48.8
CAN.G3.13 Capsicum annuum HOM05D006570 ORTHO05D008193 1.0e-127 461.5 455 54.1
DCAR_012712 Daucus carota HOM05D006570 ORTHO05D008193 1.3e-127 461.1 494 52.2
ATR0743G076 Amborella trichopoda HOM05D006570 ORTHO05D008193 3.0e-127 459.9 492 51.0
BraA04t16613Z Brassica rapa HOM05D006570 ORTHO05D008193 3.9e-127 459.5 559 47.0
CDE09G0147 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 8.1e-125 451.8 526 49.4
HPP92_007590 Vanilla planifolia HOM05D006570 ORTHO05D008193 5.8e-123 445.7 568 46.7
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 3.2e-121 439.9 475 51.4
MELO3C022371.2 Cucumis melo HOM05D006570 ORTHO05D008193 7.1e-121 438.7 541 47.9
FAN25G2405 Fragaria x ananassa HOM05D006570 ORTHO05D008193 2.7e-120 436.8 613 43.6
Os12g0211400 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 9.3e-113 411.8 563 44.6
Lsat_1_v5_gn_8_98640 Lactuca sativa HOM05D006570 ORTHO05D008193 1.3e-111 407.9 544 45.2
Hma1.2p1_0834F.1_g225710 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 3.9e-111 406.4 453 50.8
Zm00001eb411200 Zea mays HOM05D006570 ORTHO05D008193 3.4e-107 393.3 558 42.7
Eucgr.H00676 Eucalyptus grandis HOM05D006570 ORTHO05D008193 9.9e-107 391.7 334 62.6
SEGI_12299 Sequoiadendron giganteum HOM05D006570 ORTHO05D008193 2.9e-106 390.2 583 42.4
Os12g0212100 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 9.6e-102 375.2 494 46.2
Hma1.2p1_1756F.1_g301050 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 1.3e-101 374.8 324 59.6
unitig_90.g27554 Utricularia gibba HOM05D006570 ORTHO05D008193 8.4e-98 362.1 511 43.6
Pp3c18_200 Physcomitrium patens HOM05D006570 ORTHO05D008193 2.3e-95 354.0 654 37.3
Actinidia23139 Actinidia chinensis HOM05D006570 ORTHO05D008193 2.5e-94 350.5 535 42.1
MBI10_g40441_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 1.1e-92 345.1 342 53.5
Mapoly0043s0062 Marchantia polymorpha HOM05D006570 ORTHO05D008193 2.2e-85 320.9 660 34.8
FAN11G0847 Fragaria x ananassa HOM05D006570 ORTHO05D008193 3.8e-82 310.1 233 63.5
QL01p050877 Quercus lobata HOM05D006570 ORTHO05D008193 2.5e-81 307.4 262 59.2
SMO202G0040 Selaginella moellendorffii HOM05D006570 ORTHO05D008193 3.9e-71 273.5 386 43.8
MCO12G048 Micromonas commoda HOM05D006570 ORTHO05D008193 5.9e-59 233.0 575 32.3
PRCOL_00001086 Prasinoderma coloniale HOM05D006570 ORTHO05D008193 1.0e-58 232.3 483 34.6
GSVIVG01038286001 Vitis vinifera HOM05D006570 ORTHO05D008193 1.1e-52 212.2 188 53.7
CSS0008113 Camellia sinensis var. sinensis HOM05D006570 ORTHO05D008193 3.0e-47 194.1 186 57.5
CSS0032158 Camellia sinensis var. sinensis HOM05D006570 ORTHO05D008193 3.0e-47 194.1 186 57.5
Cre02.g082000 Chlamydomonas reinhardtii HOM05D006570 ORTHO05D008193 5.2e-47 193.4 394 34.3
QL01p050896 Quercus lobata HOM05D006570 ORTHO05D008193 9.8e-38 162.5 122 69.7
DCAR_012713 Daucus carota HOM05D006570 ORTHO05D008193 1.7e-34 151.8 126 60.3
CDE02G1275 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 4.4e-30 137.1 144 54.9
Ca_29093_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 7.5e-30 136.3 381 30.2
Glyma.16G028601 Glycine max HOM05D006570 ORTHO05D008193 7.5e-30 136.3 111 57.7
QL05p014267 Quercus lobata HOM05D006570 ORTHO05D008193 2.9e-29 134.4 191 42.9
QL05p014599 Quercus lobata HOM05D006570 ORTHO05D008193 5.4e-28 130.2 128 53.9
CBR_g38520 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-22 110.9 63 79.4
PGR142G0081 Punica granatum HOM05D006570 ORTHO05D008193 5.8e-14 83.6 180 36.1
CBR_g38518 Chara braunii HOM05D000019 ORTHO05D000048 2.9e-13 81.3 142 35.2
Os12g0211301 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 1.1e-07 62.8 136 35.3
MD11G1157400 Malus domestica HOM05D001201 ORTHO05D001100 7.6e-06 56.6 126 32.5


User provided reference genes

Program Settings