Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0189200 Salix brachista HOM05D001880 ORTHO05D004730 2.9e-233 811.6 438 100.0
Potri.006G241800 Populus trichocarpa HOM05D001880 ORTHO05D004730 1.0e-206 723.4 461 85.5
Potri.018G037900 Populus trichocarpa HOM05D001880 ORTHO05D004730 1.2e-197 693.3 461 82.2
Manes.03G063200 Manihot esculenta HOM05D001880 ORTHO05D004730 8.5e-132 474.6 471 59.2
CiPaw.08G023900 Carya illinoinensis HOM05D001880 ORTHO05D004730 3.5e-125 452.6 473 56.7
TAR383G0573 Trochodendron aralioides HOM05D001880 ORTHO05D004730 1.0e-124 451.1 485 56.3
Dinv14229 Davidia involucrata HOM05D001880 ORTHO05D004730 3.9e-121 439.1 488 53.9
CSS0018831 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D004730 1.4e-118 430.6 475 53.9
QL12p026586 Quercus lobata HOM05D001880 ORTHO05D004730 5.3e-118 428.7 469 54.4
Ciclev10008260m.g Citrus clementina HOM05D001880 ORTHO05D004730 7.0e-118 428.3 467 55.9
PGR031G0301 Punica granatum HOM05D001880 ORTHO05D004730 1.9e-115 420.2 464 54.5
Gohir.D05G049600 Gossypium hirsutum HOM05D001880 ORTHO05D004730 1.6e-114 417.2 465 53.3
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 8.0e-114 414.8 430 56.3
Gorai.009G050900 Gossypium raimondii HOM05D001880 ORTHO05D004730 8.0e-114 414.8 428 55.8
PGSC0003DMG400010836 Solanum tuberosum HOM05D001880 ORTHO05D004730 1.0e-113 414.5 467 53.3
Gohir.A05G048100 Gossypium hirsutum HOM05D001880 ORTHO05D004730 1.4e-113 414.1 466 53.9
Actinidia31224 Actinidia chinensis HOM05D001880 ORTHO05D004730 2.3e-113 413.3 479 53.2
Nn5g30497 Nelumbo nucifera HOM05D001880 ORTHO05D004730 4.4e-112 409.1 482 51.2
Sopen08g022160 Solanum pennellii HOM05D001880 ORTHO05D004730 4.4e-112 409.1 467 52.7
Prupe.1G452100 Prunus persica HOM05D001880 ORTHO05D004730 9.7e-112 407.9 477 52.4
Thecc.09G040300 Theobroma cacao HOM05D001880 ORTHO05D004730 2.2e-111 406.8 463 54.2
CAN.G21.30 Capsicum annuum HOM05D001880 ORTHO05D004730 4.8e-111 405.6 458 51.5
Hma1.2p1_0140F.1_g063490 Hydrangea macrophylla HOM05D001880 ORTHO05D004730 4.8e-111 405.6 492 51.8
Haze_21861 Corylus avellana HOM05D001880 ORTHO05D004730 1.1e-110 404.4 428 54.2
Lj1g0005918 Lotus japonicus HOM05D001880 ORTHO05D004730 5.3e-110 402.1 465 51.6
Cpa.g.sc78.77 Carica papaya HOM05D001880 ORTHO05D004730 1.2e-109 401.0 466 52.6
TWI32G0570 Tripterygium wilfordii HOM05D001880 ORTHO05D004730 1.2e-109 401.0 476 52.3
Oeu012185.1 Olea europaea HOM05D001880 ORTHO05D004730 3.5e-109 399.4 477 50.3
Solyc08g068310.3 Solanum lycopersicum HOM05D001880 ORTHO05D004730 7.7e-109 398.3 473 51.4
TWI63G1191 Tripterygium wilfordii HOM05D001880 ORTHO05D004730 2.2e-108 396.7 486 52.1
CANSAT25G1999 Cannabis sativa HOM05D001880 ORTHO05D004730 5.0e-108 395.6 472 55.1
Manes.16G069051 Manihot esculenta HOM05D001880 ORTHO05D004730 5.0e-108 395.6 470 52.8
Nitab4.5_0007240g0020 Nicotiana tabacum HOM05D001880 ORTHO05D004730 1.9e-107 393.7 470 51.5
FvH4_2g36050 Fragaria vesca HOM05D001880 ORTHO05D004730 2.5e-107 393.3 459 51.6
vmacro11077 Vaccinium macrocarpon HOM05D001880 ORTHO05D004730 9.4e-107 391.3 509 49.7
MSTRG.25899 Avicennia marina HOM05D001880 ORTHO05D004730 1.2e-106 391.0 480 51.0
Eucgr.C01584 Eucalyptus grandis HOM05D001880 ORTHO05D004730 2.1e-106 390.2 466 52.4
FAN15G1328 Fragaria x ananassa HOM05D001880 ORTHO05D004730 2.7e-106 389.8 463 51.4
Peaxi162Scf00523g00112 Petunia axillaris HOM05D001880 ORTHO05D004730 3.6e-106 389.4 480 48.8
Sc24g0001330 Simmondsia chinensis HOM05D001880 ORTHO05D004730 3.6e-106 389.4 469 51.4
Ah.16g105290 Amaranthus hybridus HOM05D001880 ORTHO05D004730 6.1e-106 388.7 472 52.1
Glyma.06G082200 Glycine max HOM05D001880 ORTHO05D004730 4.0e-105 386.0 464 51.9
Sed0010239 Sechium edule HOM05D001880 ORTHO05D004730 5.2e-105 385.6 467 51.0
Duzib168G0571 Durio zibethinus HOM05D001880 ORTHO05D004730 2.0e-104 383.6 475 51.6
Glyma.04G080500 Glycine max HOM05D001880 ORTHO05D004730 2.6e-104 383.3 491 49.1
FAN27G3372 Fragaria x ananassa HOM05D001880 ORTHO05D004730 3.4e-104 382.9 458 49.8
Lalb_Chr23g0269481 Lupinus albus HOM05D001880 ORTHO05D004730 4.4e-104 382.5 460 50.9
Nitab4.5_0000052g0190 Nicotiana tabacum HOM05D001880 ORTHO05D004730 7.5e-104 381.7 462 50.2
GSVIVG01035666001 Vitis vinifera HOM05D001880 ORTHO05D004730 6.3e-103 378.6 461 49.0
DCAR_003047 Daucus carota HOM05D001880 ORTHO05D004730 1.4e-102 377.5 474 52.3
THA.LOC104803768 Tarenaya hassleriana HOM05D001880 ORTHO05D004730 2.4e-102 376.7 464 50.6
MELO3C011157.2 Cucumis melo HOM05D001880 ORTHO05D004730 5.4e-102 375.6 473 49.7
DCAR_007706 Daucus carota HOM05D001880 ORTHO05D004730 5.4e-102 375.6 474 51.1
ClCG08G012380 Citrullus lanatus HOM05D001880 ORTHO05D004730 9.1e-102 374.8 470 50.6
Lj7C706T10 Lonicera japonica HOM05D001880 ORTHO05D004730 1.2e-101 374.4 443 50.1
RcHm_v2.0_Chr6g0305801 Rosa chinensis HOM05D001880 ORTHO05D004730 1.6e-101 374.0 461 49.9
Duzib150G1399 Durio zibethinus HOM05D001880 ORTHO05D004730 4.5e-101 372.5 468 51.5
MD08G1117800 Malus domestica HOM05D001880 ORTHO05D004730 5.9e-101 372.1 463 50.3
Lsat_1_v5_gn_5_33160 Lactuca sativa HOM05D001880 ORTHO05D004730 1.7e-100 370.5 467 49.7
TAR626G0413 Trochodendron aralioides HOM05D001880 ORTHO05D004730 2.9e-100 369.8 428 54.2
VMungo0647G0420 Vigna mungo HOM05D001880 ORTHO05D004730 3.8e-100 369.4 462 49.4
Migut.A00234 Erythranthe guttata HOM05D001880 ORTHO05D004730 8.6e-100 368.2 471 48.6
Rhsim02G0181700 Rhododendron simsii HOM05D001880 ORTHO05D004730 1.9e-99 367.1 421 53.0
SalBow4G1753 Salvia bowleyana HOM05D001880 ORTHO05D004730 1.2e-98 364.4 468 49.1
CsaV3_2G031070 Cucumis sativus L. HOM05D001880 ORTHO05D004730 2.1e-98 363.6 472 48.9
Gohir.D10G119600 Gossypium hirsutum HOM05D001880 ORTHO05D004730 3.6e-98 362.8 422 53.1
AUR62023013 Chenopodium quinoa HOM05D001880 ORTHO05D004730 1.8e-97 360.5 472 48.3
Medtr1g026890 Medicago truncatula HOM05D001880 ORTHO05D004730 4.0e-97 359.4 484 47.7
Phvul.001G061100 Phaseolus vulgaris HOM05D001880 ORTHO05D004730 5.2e-97 359.0 462 49.1
BraA01t00530Z Brassica rapa HOM05D001880 ORTHO05D004730 6.8e-97 358.6 471 49.7
Gorai.011G131400 Gossypium raimondii HOM05D001880 ORTHO05D004730 8.9e-97 358.2 429 50.8
HanXRQChr07g0190061 Helianthus annuus HOM05D001880 ORTHO05D004730 2.0e-96 357.1 464 48.5
SGA_v2.0_scaffold185G40074 Striga asiatica HOM05D001880 ORTHO05D004730 2.0e-96 357.1 468 48.3
Gohir.D01G144201 Gossypium hirsutum HOM05D001880 ORTHO05D004730 2.6e-96 356.7 391 53.5
Cc08_g09020 Coffea canephora HOM05D001880 ORTHO05D004730 3.4e-96 356.3 464 49.4
Aa31LG2G17280 Aethionema arabicum HOM05D001880 ORTHO05D004730 4.4e-96 355.9 463 51.0
PSO210G2288 Papaver somniferum HOM05D001880 ORTHO05D004730 4.4e-96 355.9 472 48.7
AUR62009326 Chenopodium quinoa HOM05D001880 ORTHO05D004730 5.7e-96 355.5 464 48.5
Lj8C602G7 Lonicera japonica HOM05D001880 ORTHO05D004730 7.5e-96 355.1 475 48.4
C01p06170 Brassica napus HOM05D001880 ORTHO05D004730 1.3e-95 354.4 471 49.7
BolC1t00615H Brassica oleracea HOM05D001880 ORTHO05D004730 1.3e-95 354.4 471 49.7
arahy.Tifrunner.gnm1.ann1.KUD1W7 Arachis hypogaea HOM05D001880 ORTHO05D004730 1.7e-95 354.0 478 48.7
Dinv30257 Davidia involucrata HOM05D001880 ORTHO05D004730 2.8e-95 353.2 411 53.0
AT4G32720 Arabidopsis thaliana HOM05D001880 ORTHO05D004730 3.7e-95 352.8 468 48.9
Ca_12729_v3 Cicer arietinum L. HOM05D001880 ORTHO05D004730 3.7e-95 352.8 499 46.7
A01p05590 Brassica napus HOM05D001880 ORTHO05D004730 4.9e-95 352.4 471 49.5
PSO210G1470 Papaver somniferum HOM05D001880 ORTHO05D004730 1.4e-94 350.9 472 48.3
Phvul.009G106600 Phaseolus vulgaris HOM05D001880 ORTHO05D004730 1.8e-94 350.5 493 47.3
Gohir.A07G023700 Gossypium hirsutum HOM05D001880 ORTHO05D004730 3.2e-94 349.7 468 48.9
Hund03438 Selenicereus undatus HOM05D001880 ORTHO05D004730 4.1e-94 349.4 417 51.8
Carub.0007s0776 Capsella rubella HOM05D001880 ORTHO05D004730 5.4e-94 349.0 468 48.9
AL7G19020 Arabidopsis lyrata HOM05D001880 ORTHO05D004730 7.0e-94 348.6 468 49.1
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 2.0e-93 347.1 467 49.3
arahy.Tifrunner.gnm1.ann1.I11X1M Arachis hypogaea HOM05D001880 ORTHO05D004730 5.9e-93 345.5 504 46.4
BcaB03g12759 Brassica carinata HOM05D001880 ORTHO05D004730 5.9e-93 345.5 470 47.9
Gorai.002G178100 Gossypium raimondii HOM05D001880 ORTHO05D004730 7.8e-93 345.1 413 51.6
Gorai.001G028400 Gossypium raimondii HOM05D001880 ORTHO05D004730 3.9e-92 342.8 468 47.9
PSO782G2488 Papaver somniferum HOM05D001880 ORTHO05D004730 9.5e-91 338.2 466 48.9
CARHR240720 Cardamine hirsuta HOM05D001880 ORTHO05D004730 1.2e-90 337.8 469 49.0
Glyma.17G190500 Glycine max HOM05D001880 ORTHO05D004730 1.2e-90 337.8 460 45.7
Psat6g035680 Pisum sativum HOM05D001880 ORTHO05D004730 1.2e-90 337.8 493 45.8
A08p17950 Brassica napus HOM05D001880 ORTHO05D004730 2.8e-90 336.7 470 47.0
Thhalv10025209m.g Eutrema salsugineum HOM05D001880 ORTHO05D004730 6.1e-90 335.5 468 48.5
Sed0005261 Sechium edule HOM05D001880 ORTHO05D004730 6.1e-90 335.5 414 49.0
BraA08t33746Z Brassica rapa HOM05D001880 ORTHO05D004730 1.0e-89 334.7 469 46.9
TPR.G20025 Trifolium pratense HOM05D001880 ORTHO05D004730 1.8e-89 334.0 445 45.6
PSO832G4225 Papaver somniferum HOM05D001880 ORTHO05D004730 4.0e-89 332.8 466 48.3
SHI18622 Sapria himalayana HOM05D001880 ORTHO05D004730 5.2e-89 332.4 478 46.2
BcaNung06641 Brassica carinata HOM05D001880 ORTHO05D004730 1.5e-88 330.9 469 47.1
Sp7g30490 Schrenkiella parvula HOM05D001880 ORTHO05D004730 5.8e-88 328.9 468 47.6
C03p87060 Brassica napus HOM05D001880 ORTHO05D000054 7.5e-88 328.6 467 47.3
EL10Ac2g04069 Beta vulgaris HOM05D001880 ORTHO05D004730 2.2e-87 327.0 486 44.9
BolC3t21003H Brassica oleracea HOM05D001880 ORTHO05D004730 2.2e-87 327.0 471 47.1
Aqoxy7G01616 Aquilegia oxysepala HOM05D001880 ORTHO05D004730 4.9e-87 325.9 469 48.0
Lj8C597T6 Lonicera japonica HOM05D001880 ORTHO05D004730 4.9e-87 325.9 478 46.7
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 4.6e-85 319.3 518 43.6
HPP92_013605 Vanilla planifolia HOM05D001880 ORTHO05D004730 3.6e-82 309.7 470 44.7
CDE05G2503 Ceratophyllum demersum HOM05D001880 ORTHO05D004730 1.4e-81 307.8 438 45.7
Os02g0610400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D004730 9.8e-80 301.6 471 42.7
SEGI_31507 Sequoiadendron giganteum HOM05D001880 ORTHO05D004730 2.2e-79 300.4 393 47.1
Zm00001eb425750 Zea mays HOM05D001880 ORTHO05D004730 1.0e-76 291.6 364 48.6
MBI01_g07170_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D004730 1.3e-76 291.2 407 45.7
BcaC09g52067 Brassica carinata HOM05D001880 ORTHO05D004730 3.0e-76 290.0 463 45.1
Gohir.D07G027300 Gossypium hirsutum HOM05D001880 ORTHO05D004730 2.5e-75 287.0 381 48.8
MBI04_g19165_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D004730 5.6e-75 285.8 521 38.6
Zm00001eb246770 Zea mays HOM05D001880 ORTHO05D004730 2.3e-73 280.4 473 40.2
COL.COLO4_18692 Corchorus olitorius HOM05D001880 ORTHO05D004730 3.1e-73 280.0 394 46.2
ATR0315G050 Amborella trichopoda HOM05D001880 ORTHO05D004730 2.1e-69 267.3 477 38.4
Glyma.14G143700 Glycine max HOM05D001880 ORTHO05D004730 3.5e-69 266.5 291 53.3
CDE05G1114 Ceratophyllum demersum HOM05D001880 ORTHO05D004730 1.1e-65 255.0 404 44.1
Manes.04G129200 Manihot esculenta HOM05D001880 ORTHO05D004730 5.2e-65 252.7 436 40.1
CANSAT56G0393 Cannabis sativa HOM05D001880 ORTHO05D004730 3.3e-59 233.4 414 39.4
Atru.chr7.2155 Acer truncatum HOM05D001880 ORTHO05D004730 1.6e-58 231.1 213 60.1
unitig_747.g21869 Utricularia gibba HOM05D001880 ORTHO05D004730 5.3e-57 226.1 383 45.4
BraA01t03248Z Brassica rapa HOM05D001880 ORTHO05D004730 3.6e-50 203.4 183 56.8
Thhalv10018639m.g Eutrema salsugineum HOM05D001880 ORTHO05D004730 6.2e-50 202.6 377 38.7
MD15G1097300 Malus domestica HOM05D001880 ORTHO05D004730 4.0e-49 199.9 191 56.5
A10p26590 Brassica napus HOM05D001880 ORTHO05D004730 9.0e-49 198.7 172 58.7
Pp3c21_14880 Physcomitrium patens HOM05D001880 ORTHO05D004730 1.5e-48 198.0 436 34.2
BraA10t44716Z Brassica rapa HOM05D001880 ORTHO05D004730 4.5e-48 196.4 158 60.8
SMO343G0026 Selaginella moellendorffii HOM05D001880 ORTHO05D004730 4.5e-48 196.4 416 33.2
AagrBONN_evm.TU.Sc2ySwM_228.5048 Anthoceros agrestis HOM05D001880 ORTHO05D004730 7.6e-48 195.7 434 36.2
A07p26390 Brassica napus HOM05D001880 ORTHO05D004730 7.6e-48 195.7 379 36.9
BraA07t30283Z Brassica rapa HOM05D001880 ORTHO05D004730 7.6e-48 195.7 379 36.9
Sp5g35890 Schrenkiella parvula HOM05D001880 ORTHO05D004730 1.1e-46 191.8 432 34.7
BolC6t38048H Brassica oleracea HOM05D001880 ORTHO05D004730 4.2e-46 189.9 393 37.4
C06p28780 Brassica napus HOM05D001880 ORTHO05D004730 5.4e-46 189.5 418 35.4
BcaNung07152 Brassica carinata HOM05D001880 ORTHO05D004730 9.3e-46 188.7 415 35.4
AL2G41680 Arabidopsis lyrata HOM05D001880 ORTHO05D004730 6.0e-45 186.0 419 34.1
CARHR074610 Cardamine hirsuta HOM05D001880 ORTHO05D004730 6.0e-45 186.0 375 34.7
BcaC08g45275 Brassica carinata HOM05D001880 ORTHO05D004730 1.8e-44 184.5 415 34.2
Aa31LG4G170 Aethionema arabicum HOM05D001880 ORTHO05D004730 3.9e-44 183.3 295 39.7
COL.COLO4_30423 Corchorus olitorius HOM05D001880 ORTHO05D004730 2.5e-43 180.6 177 54.8
Duzib235G1154 Durio zibethinus HOM05D001880 ORTHO05D004730 2.5e-43 180.6 337 40.1
AT1G79880 Arabidopsis thaliana HOM05D001880 ORTHO05D004730 5.6e-43 179.5 379 36.4
GSVIVG01035689001 Vitis vinifera HOM05D001880 ORTHO05D004730 5.6e-43 179.5 139 60.4
Mapoly0005s0125 Marchantia polymorpha HOM05D001880 ORTHO05D004730 1.4e-41 174.9 471 30.1
Atru.chr7.2154 Acer truncatum HOM05D001880 ORTHO05D004730 1.5e-40 171.4 226 50.0
SMO367G0348 Selaginella moellendorffii HOM05D001880 ORTHO05D004730 1.2e-37 161.8 365 32.9
Actinidia13311 Actinidia chinensis HOM05D001880 ORTHO05D004730 9.3e-30 135.6 211 43.6
Zm00001eb202540 Zea mays HOM05D002249 ORTHO05D002443 8.2e-26 122.5 113 61.1
CAN.G118.14 Capsicum annuum HOM05D001880 ORTHO05D004730 1.7e-23 114.8 188 39.9
MD15G1097100 Malus domestica HOM05D001880 ORTHO05D004730 1.1e-22 112.1 104 57.7
CBR_g34646 Chara braunii HOM05D001880 ORTHO05D004730 2.7e-21 107.5 307 31.6
vmacro05846 Vaccinium macrocarpon HOM05D001880 ORTHO05D004730 4.1e-17 93.6 233 36.5
CBR_g39611 Chara braunii HOM05D001880 ORTHO05D004730 2.2e-15 87.8 163 33.7
Zm00001eb223740 Zea mays HOM05D001870 ORTHO05D001797 5.1e-12 76.6 61 55.7
CBR_g39614 Chara braunii HOM05D001880 ORTHO05D004730 9.7e-11 72.4 174 33.3
Cre17.g724200 Chlamydomonas reinhardtii HOM05D001880 ORTHO05D004730 1.3e-10 72.0 384 24.7
BolC6t35463H Brassica oleracea HOM05D001880 ORTHO05D020102 1.7e-10 71.6 70 50.0
BolC6t38214H Brassica oleracea HOM05D001880 ORTHO05D020102 1.7e-10 71.6 70 50.0
C03p85230 Brassica napus HOM05D001880 ORTHO05D004730 2.2e-10 71.2 56 57.1
C04p60340 Brassica napus HOM05D001880 ORTHO05D020102 2.8e-10 70.9 56 57.1
BolC4t27535H Brassica oleracea HOM05D001880 ORTHO05D020102 2.8e-10 70.9 56 57.1
Zm00001eb332250 Zea mays HOM05D002343 ORTHO05D002443 8.2e-10 69.3 62 59.7
C06p30510 Brassica napus HOM05D001880 ORTHO05D020102 4.1e-09 67.0 61 54.1
Oeu055408.1 Olea europaea HOM05D001880 ORTHO05D004730 3.5e-08 63.9 58 58.6
unitig_0.g2805 Utricularia gibba HOM05D000401 ORTHO05D000252 7.7e-08 62.8 41 78.0
Rhsim03G0009800 Rhododendron simsii HOM05D008239 ORTHO05D009800 2.9e-07 60.8 99 42.4
MCO01G190 Micromonas commoda HOM05D001880 ORTHO05D004730 1.9e-06 58.2 152 30.3
BcaB06g28489 Brassica carinata HOM05D001880 ORTHO05D020102 2.5e-06 57.8 47 53.2
BcaC08g45419 Brassica carinata HOM05D001880 ORTHO05D020102 2.5e-06 57.8 53 50.9
CARHR117240 Cardamine hirsuta HOM05D001880 ORTHO05D004730 3.2e-06 57.4 50 54.0
CARHR254950 Cardamine hirsuta HOM05D000382 ORTHO05D043493 5.5e-06 56.6 44 54.5
PRCOL_00004297 Prasinoderma coloniale HOM05D001880 ORTHO05D004730 5.5e-06 56.6 354 26.0


User provided reference genes

Program Settings