Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0119200 Salix brachista HOM05D001366 ORTHO05D005449 1.4e-69 266.2 133 100.0
Potri.005G151700 Populus trichocarpa HOM05D001366 ORTHO05D005449 6.7e-48 194.1 133 77.4
Glyma.02G216100 Glycine max HOM05D001366 ORTHO05D005449 9.7e-47 190.3 133 75.9
Phvul.008G183300 Phaseolus vulgaris HOM05D001366 ORTHO05D005449 9.7e-47 190.3 133 75.9
FvH4_5g34180 Fragaria vesca HOM05D001366 ORTHO05D005449 1.3e-46 189.9 133 75.9
FAN18G2982 Fragaria x ananassa HOM05D001366 ORTHO05D005449 1.3e-46 189.9 133 75.9
LjContig00408g0006754 Lotus japonicus HOM05D001366 ORTHO05D005449 1.3e-46 189.9 133 75.9
Manes.18G057000 Manihot esculenta HOM05D001366 ORTHO05D005449 2.8e-46 188.7 133 75.2
Medtr7g005540 Medicago truncatula HOM05D001366 ORTHO05D005449 2.8e-46 188.7 133 75.2
Gohir.A05G216500 Gossypium hirsutum HOM05D001366 ORTHO05D005449 3.7e-46 188.3 133 74.4
RcHm_v2.0_Chr7g0233761 Rosa chinensis HOM05D001366 ORTHO05D005449 3.7e-46 188.3 133 75.9
Cpa.g.sc21.43 Carica papaya HOM05D001366 ORTHO05D005449 4.8e-46 188.0 133 75.2
Prupe.1G536300 Prunus persica HOM05D001366 ORTHO05D005449 4.8e-46 188.0 133 75.2
GSVIVG01009213001 Vitis vinifera HOM05D001366 ORTHO05D005449 4.8e-46 188.0 133 74.4
FAN04G2369 Fragaria x ananassa HOM05D001366 ORTHO05D005449 8.2e-46 187.2 133 74.4
TWI09G0135 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 1.1e-45 186.8 133 73.7
CANSAT25G2801 Cannabis sativa HOM05D001366 ORTHO05D005449 1.4e-45 186.4 133 74.4
Sed0015347 Sechium edule HOM05D001366 ORTHO05D005449 1.4e-45 186.4 133 73.7
DCAR_006444 Daucus carota HOM05D001366 ORTHO05D005449 2.4e-45 185.7 133 74.4
Gorai.009G278800 Gossypium raimondii HOM05D001366 ORTHO05D005449 2.4e-45 185.7 133 74.4
Rhsim07G0213700 Rhododendron simsii HOM05D001366 ORTHO05D005449 2.4e-45 185.7 133 74.4
COL.COLO4_35286 Corchorus olitorius HOM05D001366 ORTHO05D005449 3.1e-45 185.3 133 74.4
CsaV3_2G033370 Cucumis sativus L. HOM05D001366 ORTHO05D005449 3.1e-45 185.3 133 72.9
Sed0016266 Sechium edule HOM05D001366 ORTHO05D005449 3.1e-45 185.3 133 72.9
TPR.G15622 Trifolium pratense HOM05D001366 ORTHO05D005449 3.1e-45 185.3 130 75.4
CARHR231830 Cardamine hirsuta HOM05D001366 ORTHO05D005449 4.1e-45 184.9 133 73.7
ClCG11G014700 Citrullus lanatus HOM05D001366 ORTHO05D005449 4.1e-45 184.9 133 73.7
Glyma.14G183100 Glycine max HOM05D001366 ORTHO05D005449 4.1e-45 184.9 133 74.4
Hma1.2p1_0125F.1_g058680 Hydrangea macrophylla HOM05D001366 ORTHO05D005449 4.1e-45 184.9 133 73.7
Rhsim02G0071900 Rhododendron simsii HOM05D001366 ORTHO05D005449 4.1e-45 184.9 133 74.4
TWI73G1055 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 4.1e-45 184.9 133 72.9
Aqoxy2G03242 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 7.0e-45 184.1 133 72.9
MBI19_g32700_MAGBIO Magnolia biondii HOM05D001366 ORTHO05D005449 7.0e-45 184.1 133 73.7
Psat2g064960 Pisum sativum HOM05D001366 ORTHO05D005449 7.0e-45 184.1 133 73.7
Gohir.A05G264200 Gossypium hirsutum HOM05D001366 ORTHO05D005449 9.1e-45 183.7 133 73.7
Lalb_Chr23g0269931 Lupinus albus HOM05D001366 ORTHO05D005449 9.1e-45 183.7 133 73.7
Gohir.D05G266700 Gossypium hirsutum HOM05D001366 ORTHO05D005449 1.2e-44 183.3 133 73.7
PSO013G0324 Papaver somniferum HOM05D001366 ORTHO05D005449 1.2e-44 183.3 133 72.2
HPP92_010288 Vanilla planifolia HOM05D001366 ORTHO05D005449 1.2e-44 183.3 132 73.5
BcaC09g50868 Brassica carinata HOM05D001366 ORTHO05D003220 1.5e-44 183.0 132 72.7
C01p19760 Brassica napus HOM05D001366 ORTHO05D003220 1.5e-44 183.0 132 72.7
BolC1t01904H Brassica oleracea HOM05D001366 ORTHO05D003220 1.5e-44 183.0 132 72.7
PSO761G0276 Papaver somniferum HOM05D001366 ORTHO05D005449 1.5e-44 183.0 133 72.2
PSO832G3977 Papaver somniferum HOM05D001366 ORTHO05D005449 1.5e-44 183.0 133 71.4
PGR042G3224 Punica granatum HOM05D001366 ORTHO05D005449 1.5e-44 183.0 133 72.9
Actinidia29656 Actinidia chinensis HOM05D001366 ORTHO05D005449 2.0e-44 182.6 133 72.9
Aa31LG4G9540 Aethionema arabicum HOM05D001366 ORTHO05D005449 2.0e-44 182.6 133 72.9
Carub.0007s1663 Capsella rubella HOM05D001366 ORTHO05D005449 2.0e-44 182.6 133 72.9
Lalb_Chr11g0064851 Lupinus albus HOM05D001366 ORTHO05D005449 2.0e-44 182.6 133 72.9
Nn1g05642 Nelumbo nucifera HOM05D001366 ORTHO05D005449 2.0e-44 182.6 133 72.9
Aqoxy6G00666 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 2.6e-44 182.2 133 71.4
Ciclev10002917m.g Citrus clementina HOM05D001366 ORTHO05D005449 2.6e-44 182.2 133 72.9
MELO3C008106.2 Cucumis melo HOM05D001366 ORTHO05D005449 2.6e-44 182.2 133 72.2
Gohir.D05G220900 Gossypium hirsutum HOM05D001366 ORTHO05D005449 2.6e-44 182.2 133 72.2
Gorai.009G228000 Gossypium raimondii HOM05D001366 ORTHO05D005449 2.6e-44 182.2 133 72.2
arahy.Tifrunner.gnm1.ann1.HU70H8 Arachis hypogaea HOM05D001366 ORTHO05D005449 3.5e-44 181.8 133 72.9
AL7G28780 Arabidopsis lyrata HOM05D001366 ORTHO05D005449 4.5e-44 181.4 133 72.2
AT4G24440 Arabidopsis thaliana HOM05D001366 ORTHO05D005449 4.5e-44 181.4 133 72.2
Thhalv10026637m.g Eutrema salsugineum HOM05D001366 ORTHO05D005449 4.5e-44 181.4 133 72.2
Sp7g22400 Schrenkiella parvula HOM05D001366 ORTHO05D005449 4.5e-44 181.4 133 72.2
BcaC06g32884 Brassica carinata HOM05D001366 ORTHO05D005449 5.9e-44 181.0 133 72.2
A01p15810 Brassica napus HOM05D001366 ORTHO05D003220 5.9e-44 181.0 130 73.1
BolC7t45851H Brassica oleracea HOM05D001366 ORTHO05D005449 5.9e-44 181.0 133 72.2
BraA01t01516Z Brassica rapa HOM05D001366 ORTHO05D003220 5.9e-44 181.0 130 73.1
Haze_22489 Corylus avellana HOM05D001366 ORTHO05D005449 5.9e-44 181.0 133 72.2
CsaV3_2G033350 Cucumis sativus L. HOM05D001366 ORTHO05D005449 5.9e-44 181.0 133 72.9
PSO700G0345 Papaver somniferum HOM05D001366 ORTHO05D005449 5.9e-44 181.0 133 71.4
arahy.Tifrunner.gnm1.ann1.8785AP Arachis hypogaea HOM05D001366 ORTHO05D005449 7.7e-44 180.6 133 72.2
arahy.Tifrunner.gnm1.ann1.CRNC3Y Arachis hypogaea HOM05D001366 ORTHO05D005449 7.7e-44 180.6 133 72.2
arahy.Tifrunner.gnm1.ann1.T41BVH Arachis hypogaea HOM05D001366 ORTHO05D005449 7.7e-44 180.6 133 72.9
EL10Ac8g20405 Beta vulgaris HOM05D001366 ORTHO05D005449 7.7e-44 180.6 133 71.4
EL10Ac9g20840 Beta vulgaris HOM05D001366 ORTHO05D005449 7.7e-44 180.6 133 72.2
CiPaw.08G057200 Carya illinoinensis HOM05D001366 ORTHO05D005449 7.7e-44 180.6 133 71.4
Lalb_Chr08g0242611 Lupinus albus HOM05D001366 ORTHO05D005449 7.7e-44 180.6 133 72.2
THA.LOC104815469 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 7.7e-44 180.6 133 72.2
Thecc.08G074000 Theobroma cacao HOM05D001366 ORTHO05D005449 7.7e-44 180.6 133 72.9
BcaNung05637 Brassica carinata HOM05D001366 ORTHO05D005449 1.3e-43 179.9 133 71.4
A03p55290 Brassica napus HOM05D001366 ORTHO05D005449 1.3e-43 179.9 133 71.4
A08p21460 Brassica napus HOM05D001366 ORTHO05D005449 1.3e-43 179.9 133 72.2
C07p53590 Brassica napus HOM05D001366 ORTHO05D005449 1.3e-43 179.9 133 71.4
BolC8t48576H Brassica oleracea HOM05D001366 ORTHO05D005449 1.3e-43 179.9 133 72.2
BraA03t14588Z Brassica rapa HOM05D001366 ORTHO05D005449 1.3e-43 179.9 133 71.4
BraA08t34095Z Brassica rapa HOM05D001366 ORTHO05D005449 1.3e-43 179.9 133 72.2
ATR0691G175 Amborella trichopoda HOM05D001366 ORTHO05D005449 1.7e-43 179.5 133 72.2
CiPaw.07G162800 Carya illinoinensis HOM05D001366 ORTHO05D005449 2.2e-43 179.1 133 71.4
Eucgr.F00436 Eucalyptus grandis HOM05D001366 ORTHO05D005449 2.2e-43 179.1 133 71.4
TAR625G0060 Trochodendron aralioides HOM05D001366 ORTHO05D005449 2.9e-43 178.7 133 71.4
Atru.chr13.973 Acer truncatum HOM05D001366 ORTHO05D005449 3.8e-43 178.3 133 70.7
Duzib041G0019 Durio zibethinus HOM05D001366 ORTHO05D005449 3.8e-43 178.3 133 70.7
Atru.chr11.619 Acer truncatum HOM05D001366 ORTHO05D005449 5.0e-43 177.9 133 70.7
Lsat_1_v5_gn_6_107360 Lactuca sativa HOM05D001366 ORTHO05D005449 5.0e-43 177.9 132 69.7
Peaxi162Scf00160g00913 Petunia axillaris HOM05D001366 ORTHO05D005449 8.5e-43 177.2 133 71.4
Hund07854 Selenicereus undatus HOM05D001366 ORTHO05D005449 1.1e-42 176.8 133 70.7
THA.LOC104799853 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 1.1e-42 176.8 133 70.7
HanXRQChr10g0277741 Helianthus annuus HOM05D001366 ORTHO05D005449 1.4e-42 176.4 133 69.9
Nitab4.5_0000885g0060 Nicotiana tabacum HOM05D001366 ORTHO05D005449 1.4e-42 176.4 133 70.7
CSS0026904 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 2.5e-42 175.6 133 70.7
Cc10_g08370 Coffea canephora HOM05D001366 ORTHO05D005449 4.2e-42 174.9 133 70.7
ECA240G3991 Erigeron canadensis HOM05D001366 ORTHO05D005449 4.2e-42 174.9 133 69.2
PGSC0003DMG400002052 Solanum tuberosum HOM05D001366 ORTHO05D005449 4.2e-42 174.9 133 70.7
CAN.G1104.8 Capsicum annuum HOM05D001366 ORTHO05D005449 5.5e-42 174.5 133 70.7
Medtr5g066740 Medicago truncatula HOM05D001366 ORTHO05D005449 5.5e-42 174.5 133 68.4
Os05g0107700 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 5.5e-42 174.5 133 70.7
Solyc12g088030.2 Solanum lycopersicum HOM05D001366 ORTHO05D005449 5.5e-42 174.5 133 70.7
Sopen12g030060 Solanum pennellii HOM05D001366 ORTHO05D005449 5.5e-42 174.5 133 70.7
CSS0031876 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 7.2e-42 174.1 133 69.9
Nitab4.5_0000354g0080 Nicotiana tabacum HOM05D001366 ORTHO05D005449 1.2e-41 173.3 133 69.9
HanXRQChr03g0063191 Helianthus annuus HOM05D001366 ORTHO05D005449 1.6e-41 172.9 133 68.4
TPR.G38776 Trifolium pratense HOM05D001366 ORTHO05D005449 1.6e-41 172.9 133 69.9
Ah.01g003970 Amaranthus hybridus HOM05D001366 ORTHO05D005449 2.1e-41 172.6 133 69.2
Zm00001eb356100 Zea mays HOM05D001366 ORTHO05D005449 2.1e-41 172.6 133 69.2
TWI56G0439 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 6.1e-41 171.0 133 67.7
Oeu040884.1 Olea europaea HOM05D001366 ORTHO05D005449 8.0e-41 170.6 133 69.2
Zm00001eb139900 Zea mays HOM05D001366 ORTHO05D005449 1.5e-39 166.4 130 66.9
MSTRG.5323 Avicennia marina HOM05D001366 ORTHO05D005449 2.0e-39 166.0 133 65.4
Os01g0970500 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 2.0e-39 166.0 130 66.2
Oeu038169.3 Olea europaea HOM05D001366 ORTHO05D005449 4.4e-39 164.9 165 60.0
SalBow3G1925 Salvia bowleyana HOM05D001366 ORTHO05D005449 7.4e-39 164.1 133 66.9
MSTRG.27758 Avicennia marina HOM05D001366 ORTHO05D005449 9.7e-39 163.7 133 65.4
Migut.N01147 Erythranthe guttata HOM05D001366 ORTHO05D005449 1.3e-38 163.3 133 66.2
SalBow6G3832 Salvia bowleyana HOM05D001366 ORTHO05D005449 1.3e-38 163.3 133 66.9
SalBow6G5818 Salvia bowleyana HOM05D001366 ORTHO05D005449 1.3e-38 163.3 133 66.9
SGA_v2.0_scaffold337G49194 Striga asiatica HOM05D001366 ORTHO05D005449 1.7e-38 162.9 133 66.2
SHI29728 Sapria himalayana HOM05D001366 ORTHO05D005449 1.8e-37 159.5 133 65.4
MD08G1203900 Malus domestica HOM05D001366 ORTHO05D005449 2.4e-37 159.1 120 70.0
unitig_22.g6842 Utricularia gibba HOM05D001366 ORTHO05D005449 3.1e-37 158.7 133 63.2
SGA_v2.0_scaffold219G42523 Striga asiatica HOM05D001366 ORTHO05D005449 5.3e-37 157.9 130 64.6
MSTRG.16686 Avicennia marina HOM05D001366 ORTHO05D005449 7.0e-37 157.5 130 63.1
Psat0s2399g0160 Pisum sativum HOM05D001366 ORTHO05D005449 9.1e-37 157.1 130 61.5
AUR62017035 Chenopodium quinoa HOM05D001366 ORTHO05D005449 1.2e-36 156.8 120 70.0
ECA246G1742 Erigeron canadensis HOM05D001366 ORTHO05D005449 2.2e-35 152.5 124 63.7
Actinidia19254 Actinidia chinensis HOM05D001366 ORTHO05D005449 1.2e-33 146.7 133 57.9
Duzib116G0949 Durio zibethinus HOM05D001366 ORTHO05D005449 1.2e-31 140.2 133 58.6
TAR381G0322 Trochodendron aralioides HOM05D001366 ORTHO05D005449 1.5e-31 139.8 129 58.9
Lsat_1_v5_gn_7_43741 Lactuca sativa HOM05D001366 ORTHO05D005449 4.8e-30 134.8 109 66.1
Mapoly0012s0108 Marchantia polymorpha HOM05D001366 ORTHO05D005449 1.8e-29 132.9 130 51.5
AagrBONN_evm.TU.Sc2ySwM_228.5579 Anthoceros agrestis HOM05D001366 ORTHO05D005449 9.1e-29 130.6 130 50.0
Pp3c15_13540 Physcomitrium patens HOM05D001366 ORTHO05D005449 1.2e-28 130.2 133 51.1
Pp3c9_10830 Physcomitrium patens HOM05D001366 ORTHO05D005449 2.0e-28 129.4 133 51.1
AagrBONN_evm.TU.Sc2ySwM_228.3950 Anthoceros agrestis HOM05D001366 ORTHO05D005449 2.9e-27 125.6 130 48.5
SMO169G0007 Selaginella moellendorffii HOM05D001366 ORTHO05D005449 5.5e-26 121.3 130 46.9
Actinidia19617 Actinidia chinensis HOM05D001366 ORTHO05D005449 1.2e-25 120.2 99 65.7
RcHm_v2.0_Chr5g0012851 Rosa chinensis HOM05D001366 ORTHO05D005449 2.6e-23 112.5 133 48.1
Ca_08744_v3 Cicer arietinum L. HOM05D001366 ORTHO05D005449 4.4e-23 111.7 67 89.6
VMungo0647G1399 Vigna mungo HOM05D001366 ORTHO05D005449 5.7e-23 111.3 66 87.9
vmacro04625 Vaccinium macrocarpon HOM05D001366 ORTHO05D005449 4.8e-22 108.2 60 91.7
Dinv42590 Davidia involucrata HOM05D001366 ORTHO05D005449 6.3e-22 107.8 69 82.6
QL09p018667 Quercus lobata HOM05D001366 ORTHO05D005449 1.1e-21 107.1 61 88.5
Migut.B00439 Erythranthe guttata HOM05D001366 ORTHO05D005449 7.0e-21 104.4 133 46.6
unitig_8.g3420 Utricularia gibba HOM05D001366 ORTHO05D005449 3.8e-19 98.6 120 50.8
AagrBONN_evm.TU.Sc2ySwM_368.1269 Anthoceros agrestis HOM05D001366 ORTHO05D005449 5.0e-19 98.2 130 38.5
Haze_27711 Corylus avellana HOM05D001366 ORTHO05D005449 3.3e-18 95.5 125 39.2
Lsat_1_v5_gn_4_60280 Lactuca sativa HOM05D001366 ORTHO05D005449 1.6e-17 93.2 92 57.6
C06p07570 Brassica napus HOM05D001366 ORTHO05D005449 7.5e-15 84.3 133 43.6
BolC6t35845H Brassica oleracea HOM05D001366 ORTHO05D005449 7.5e-15 84.3 133 43.6
AUR62014838 Chenopodium quinoa HOM05D001366 ORTHO05D005449 1.3e-14 83.6 57 71.9
HanXRQChr05g0143271 Helianthus annuus HOM05D001366 ORTHO05D005449 1.1e-13 80.5 50 78.0
Mapoly0067s0078 Marchantia polymorpha HOM05D001366 ORTHO05D005449 1.1e-13 80.5 124 37.9
BcaC08g43388 Brassica carinata HOM05D001366 ORTHO05D005449 2.7e-12 75.9 104 45.2
Lsat_1_v5_gn_8_150280 Lactuca sativa HOM05D001675 ORTHO05D004161 5.0e-11 71.6 56 67.9
Cre10.g424150 Chlamydomonas reinhardtii HOM05D001366 ORTHO05D005449 8.0e-09 64.3 130 28.5
TAR374G0947 Trochodendron aralioides HOM05D000025 ORTHO05D000040 1.8e-08 63.2 34 76.5
HanXRQChr11g0353851 Helianthus annuus HOM05D001366 ORTHO05D005449 3.1e-08 62.4 36 80.6
Lsat_1_v5_gn_8_45161 Lactuca sativa HOM05D001675 ORTHO05D001808 4.9e-06 55.1 38 76.3
PRCOL_00001724 Prasinoderma coloniale HOM05D001366 ORTHO05D005449 4.9e-06 55.1 118 25.4


User provided reference genes

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