Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0051400 Salix brachista HOM05D005639 ORTHO05D007234 5.9e-246 854.0 503 100.0
Potri.005G061000 Populus trichocarpa HOM05D005639 ORTHO05D007234 7.3e-228 793.9 502 94.6
Potri.007G107900 Populus trichocarpa HOM05D005639 ORTHO05D007234 5.8e-217 757.7 505 89.1
Sabra07G0088400 Salix brachista HOM05D005639 ORTHO05D007234 9.5e-212 740.3 503 88.5
Manes.13G081200 Manihot esculenta HOM05D005639 ORTHO05D007234 3.1e-162 575.9 384 80.7
GSVIVG01021618001 Vitis vinifera HOM05D005639 ORTHO05D007234 5.1e-157 558.5 439 70.2
Atru.chr10.888 Acer truncatum HOM05D005639 ORTHO05D007234 3.3e-156 555.8 441 69.4
Ciclev10014949m.g Citrus clementina HOM05D005639 ORTHO05D007234 1.3e-155 553.9 517 65.2
TWI73G0023 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 5.3e-154 548.5 517 61.3
Cpa.g.sc19.212 Carica papaya HOM05D005639 ORTHO05D007234 6.9e-154 548.1 444 68.7
Prupe.4G089600 Prunus persica HOM05D005639 ORTHO05D007234 4.5e-153 545.4 518 60.4
MD05G1274300 Malus domestica HOM05D005639 ORTHO05D007234 8.5e-152 541.2 439 67.4
Cfa016817 Carpinus fangiana HOM05D005639 ORTHO05D007234 1.9e-151 540.0 440 68.4
Nn5g27628 Nelumbo nucifera HOM05D005639 ORTHO05D007234 2.5e-151 539.7 515 60.0
MD10G1254000 Malus domestica HOM05D005639 ORTHO05D007234 5.5e-151 538.5 517 59.8
ClCG08G001610 Citrullus lanatus HOM05D005639 ORTHO05D007234 7.2e-151 538.1 442 67.4
DCAR_003859 Daucus carota HOM05D005639 ORTHO05D007234 1.8e-149 533.5 511 59.5
THA.LOC104812393 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 1.8e-149 533.5 513 65.9
CsaV3_5G039540 Cucumis sativus L. HOM05D005639 ORTHO05D007234 5.1e-149 531.9 514 59.9
HanXRQChr17g0569471 Helianthus annuus HOM05D005639 ORTHO05D007234 2.6e-148 529.6 440 67.0
Dinv03058 Davidia involucrata HOM05D005639 ORTHO05D007234 3.3e-148 529.3 518 60.8
Sed0017304 Sechium edule HOM05D005639 ORTHO05D007234 5.7e-148 528.5 515 60.0
TWI09G1293 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 7.4e-148 528.1 517 58.8
Rhsim13G0120200 Rhododendron simsii HOM05D005639 ORTHO05D007234 2.2e-147 526.6 434 67.7
CSS0044875 Camellia sinensis var. sinensis HOM05D005639 ORTHO05D007234 3.7e-147 525.8 524 62.8
PGR083G2688 Punica granatum HOM05D005639 ORTHO05D007234 3.7e-147 525.8 440 67.0
CiPaw.04G138400 Carya illinoinensis HOM05D005639 ORTHO05D007234 6.3e-147 525.0 439 66.3
Lsat_1_v5_gn_4_3900 Lactuca sativa HOM05D005639 ORTHO05D007234 6.3e-147 525.0 434 65.9
FvH4_3g09990 Fragaria vesca HOM05D005639 ORTHO05D007234 8.2e-147 524.6 432 66.7
Hma1.2p1_0333F.1_g128320 Hydrangea macrophylla HOM05D005639 ORTHO05D007234 1.1e-146 524.2 518 67.4
THA.LOC104806253 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 2.4e-146 523.1 434 67.1
Haze_19855 Corylus avellana HOM05D005639 ORTHO05D007234 3.1e-146 522.7 461 64.6
Eucgr.D00190 Eucalyptus grandis HOM05D005639 ORTHO05D007234 3.1e-146 522.7 533 63.4
RcHm_v2.0_Chr5g0015871 Rosa chinensis HOM05D005639 ORTHO05D007234 5.3e-146 521.9 432 66.4
Thecc.06G000900 Theobroma cacao HOM05D005639 ORTHO05D007234 6.9e-146 521.5 522 59.2
FAN16G1271 Fragaria x ananassa HOM05D005639 ORTHO05D007234 1.2e-145 520.8 441 61.0
Cc09_g08220 Coffea canephora HOM05D005639 ORTHO05D007234 4.5e-145 518.8 443 65.5
FAN21G2832 Fragaria x ananassa HOM05D005639 ORTHO05D007234 4.5e-145 518.8 511 63.0
FAN25G3670 Fragaria x ananassa HOM05D005639 ORTHO05D007234 4.5e-145 518.8 432 66.2
Sed0027243 Sechium edule HOM05D005639 ORTHO05D007234 2.2e-144 516.5 518 59.5
Migut.H01334 Erythranthe guttata HOM05D005639 ORTHO05D007234 6.5e-144 515.0 401 68.8
Actinidia36001 Actinidia chinensis HOM05D005639 ORTHO05D007234 8.5e-144 514.6 522 64.4
vmacro03396 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 1.4e-143 513.8 519 63.4
Lalb_Chr18g0057911 Lupinus albus HOM05D005639 ORTHO05D007234 2.5e-143 513.1 440 65.0
ECA234G3170 Erigeron canadensis HOM05D005639 ORTHO05D007234 7.2e-143 511.5 444 64.0
COL.COLO4_26825 Corchorus olitorius HOM05D005639 ORTHO05D007234 7.9e-142 508.1 516 58.7
QL03p009300 Quercus lobata HOM05D005639 ORTHO05D007234 1.0e-141 507.7 538 53.2
VMungo0540G0794 Vigna mungo HOM05D005639 ORTHO05D007234 1.8e-141 506.9 442 63.1
MSTRG.13266 Avicennia marina HOM05D005639 ORTHO05D007234 4.4e-140 502.3 438 63.9
Dinv01990 Davidia involucrata HOM05D005639 ORTHO05D007234 7.4e-140 501.5 508 58.7
Hund22392 Selenicereus undatus HOM05D005639 ORTHO05D007234 1.7e-139 500.4 435 63.2
SGA_v2.0_scaffold106G30666 Striga asiatica HOM05D005639 ORTHO05D007234 2.2e-139 500.0 432 65.0
MELO3C022131.2 Cucumis melo HOM05D005639 ORTHO05D007234 6.3e-139 498.4 420 66.4
Gohir.A02G094000 Gossypium hirsutum HOM05D005639 ORTHO05D007234 8.2e-139 498.0 518 56.9
SalBow7G3138 Salvia bowleyana HOM05D005639 ORTHO05D007234 1.6e-137 493.8 481 59.9
Nitab4.5_0004077g0020 Nicotiana tabacum HOM05D005639 ORTHO05D007234 2.0e-137 493.4 517 64.4
Aqoxy1G01607 Aquilegia oxysepala HOM05D005639 ORTHO05D007234 2.6e-137 493.0 435 62.1
PSO675G8746 Papaver somniferum HOM05D005639 ORTHO05D007234 2.6e-137 493.0 440 62.7
Lj6g0009484 Lotus japonicus HOM05D005639 ORTHO05D007234 3.5e-137 492.7 505 56.8
Glyma.09G023100 Glycine max HOM05D005639 ORTHO05D007234 4.5e-137 492.3 439 61.5
Gorai.005G118400 Gossypium raimondii HOM05D005639 ORTHO05D007234 5.9e-137 491.9 520 56.7
ATR0165G031 Amborella trichopoda HOM05D005639 ORTHO05D007234 1.7e-136 490.3 441 61.2
FAN11G3706 Fragaria x ananassa HOM05D005639 ORTHO05D007234 1.7e-136 490.3 439 59.5
Gohir.D02G104300 Gossypium hirsutum HOM05D005639 ORTHO05D007234 2.2e-136 490.0 520 56.3
Peaxi162Scf00670g00332 Petunia axillaris HOM05D005639 ORTHO05D007234 3.8e-136 489.2 429 64.3
arahy.Tifrunner.gnm1.ann1.JS3IU7 Arachis hypogaea HOM05D005639 ORTHO05D007234 6.5e-136 488.4 438 63.0
Phvul.006G129100 Phaseolus vulgaris HOM05D005639 ORTHO05D007234 6.5e-136 488.4 443 62.1
PGSC0003DMG402021193 Solanum tuberosum HOM05D005639 ORTHO05D007234 1.5e-135 487.3 434 63.4
PSO541G1457 Papaver somniferum HOM05D005639 ORTHO05D007234 4.2e-135 485.7 441 62.4
Psat1g168120 Pisum sativum HOM05D005639 ORTHO05D007234 9.4e-135 484.6 441 60.8
Nitab4.5_0002719g0080 Nicotiana tabacum HOM05D005639 ORTHO05D007234 1.2e-134 484.2 517 64.2
Sc24g0001380 Simmondsia chinensis HOM05D005639 ORTHO05D007234 8.0e-134 481.5 432 62.3
Ca_00807_v3 Cicer arietinum L. HOM05D005639 ORTHO05D007234 3.0e-133 479.6 400 65.2
Medtr2g029940 Medicago truncatula HOM05D005639 ORTHO05D007234 3.0e-133 479.6 400 65.0
Solyc02g069770.3 Solanum lycopersicum HOM05D005639 ORTHO05D007234 3.0e-133 479.6 433 62.6
HPP92_013994 Vanilla planifolia HOM05D005639 ORTHO05D007234 3.0e-133 479.6 442 62.0
Sopen02g018930 Solanum pennellii HOM05D005639 ORTHO05D007234 4.0e-133 479.2 433 62.4
AT4G21130 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 8.8e-133 478.0 425 58.1
Ah.14g085710 Amaranthus hybridus HOM05D005639 ORTHO05D007234 1.2e-132 477.6 436 61.0
CiPaw.02G032400 Carya illinoinensis HOM05D005639 ORTHO05D007234 1.7e-131 473.8 430 58.6
TAR626G0701 Trochodendron aralioides HOM05D005639 ORTHO05D007234 2.2e-131 473.4 376 68.4
arahy.Tifrunner.gnm1.ann1.MSHM5J Arachis hypogaea HOM05D005639 ORTHO05D007234 2.4e-130 469.9 479 57.6
Thhalv10028589m.g Eutrema salsugineum HOM05D005639 ORTHO05D007234 6.5e-128 461.8 433 60.7
Aa31LG9G9170 Aethionema arabicum HOM05D005639 ORTHO05D007234 8.5e-128 461.5 406 64.3
AUR62033065 Chenopodium quinoa HOM05D005639 ORTHO05D007234 6.1e-126 455.3 407 60.4
AL6G49000 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 1.8e-125 453.8 372 66.7
CARHR252170 Cardamine hirsuta HOM05D005639 ORTHO05D007234 1.8e-125 453.8 430 59.3
Oeu030450.1 Olea europaea HOM05D005639 ORTHO05D007234 2.3e-125 453.4 496 52.4
Carub.0006s3332 Capsella rubella HOM05D005639 ORTHO05D007234 4.0e-125 452.6 429 55.5
unitig_8.g4887 Utricularia gibba HOM05D005639 ORTHO05D007234 1.2e-124 451.1 424 60.4
EL10Ac4g08968 Beta vulgaris HOM05D005639 ORTHO05D007234 2.8e-123 446.4 398 63.8
AT4G05410 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 9.1e-122 441.4 374 65.0
AL7G32990 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 4.5e-121 439.1 425 54.1
CiPaw.10G033400 Carya illinoinensis HOM05D005639 ORTHO05D007234 1.0e-120 438.0 462 53.5
BolC9t56080H Brassica oleracea HOM05D005639 ORTHO05D007234 5.0e-120 435.6 489 53.0
BolC3t15973H Brassica oleracea HOM05D005639 ORTHO05D007234 6.5e-120 435.3 374 63.4
BcaC01g06663 Brassica carinata HOM05D005639 ORTHO05D007234 8.6e-120 434.9 369 63.1
BraA09t38117Z Brassica rapa HOM05D005639 ORTHO05D007234 1.9e-119 433.7 488 52.9
C03p36580 Brassica napus HOM05D005639 ORTHO05D007234 3.3e-119 433.0 369 62.9
BraA03t12214Z Brassica rapa HOM05D005639 ORTHO05D007234 3.3e-119 433.0 374 62.8
A03p30310 Brassica napus HOM05D005639 ORTHO05D007234 5.5e-119 432.2 370 63.2
C09p32350 Brassica napus HOM05D005639 ORTHO05D007234 5.5e-119 432.2 426 58.2
Sp6g03680 Schrenkiella parvula HOM05D005639 ORTHO05D007234 9.5e-119 431.4 373 62.7
A09p25350 Brassica napus HOM05D005639 ORTHO05D007234 1.2e-118 431.0 493 55.2
BcaB01g02559 Brassica carinata HOM05D005639 ORTHO05D007234 1.8e-117 427.2 425 56.9
Zm00001eb218720 Zea mays HOM05D005639 ORTHO05D007234 6.8e-117 425.2 435 57.9
Zm00001eb050650 Zea mays HOM05D005639 ORTHO05D007234 2.0e-116 423.7 390 60.8
CDE05G0927 Ceratophyllum demersum HOM05D005639 ORTHO05D007234 5.7e-116 422.2 437 56.5
Os03g0625900 Oryza sativa ssp. japonica HOM05D005639 ORTHO05D007234 2.0e-113 413.7 397 58.9
AUR62042204 Chenopodium quinoa HOM05D005639 ORTHO05D007234 3.5e-113 412.9 410 57.1
Mapoly0012s0170 Marchantia polymorpha HOM05D005639 ORTHO05D007234 6.8e-109 398.7 449 52.8
Pp3c15_1000 Physcomitrium patens HOM05D005639 ORTHO05D007234 3.5e-105 386.3 458 51.3
Pp3c13_22280 Physcomitrium patens HOM05D005639 ORTHO05D007234 1.9e-103 380.6 452 50.9
AagrBONN_evm.TU.Sc2ySwM_228.3905 Anthoceros agrestis HOM05D005639 ORTHO05D007234 4.3e-103 379.4 436 52.8
vmacro03440 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 1.7e-99 367.5 504 49.8
HanXRQChr13g0407861 Helianthus annuus HOM05D005639 ORTHO05D007234 2.1e-89 334.0 353 57.5
SMO146G0033 Selaginella moellendorffii HOM05D005639 ORTHO05D007234 2.6e-84 317.0 391 49.6
Glyma.15G129100 Glycine max HOM05D005639 ORTHO05D007234 2.4e-82 310.5 261 59.8
CBR_g50978 Chara braunii HOM05D005639 ORTHO05D007234 1.8e-77 294.3 521 41.1
Actinidia13477 Actinidia chinensis HOM05D005639 ORTHO05D007234 1.2e-68 265.0 198 67.2
MCO15G200 Micromonas commoda HOM05D005639 ORTHO05D007234 5.4e-66 256.1 469 34.8
PRCOL_00004480 Prasinoderma coloniale HOM05D005639 ORTHO05D007234 1.8e-61 241.1 468 39.1
Actinidia13478 Actinidia chinensis HOM05D005639 ORTHO05D007234 1.3e-56 224.9 187 63.1
C06p38580 Brassica napus HOM05D005639 ORTHO05D007234 9.0e-53 212.2 267 45.7
Duzib235G0447 Durio zibethinus HOM05D005639 ORTHO05D007234 1.1e-50 205.3 223 48.9
Cre06.g278175 Chlamydomonas reinhardtii HOM05D005639 ORTHO05D007234 6.3e-46 189.5 462 31.4
BolC6t38950H Brassica oleracea HOM05D005639 ORTHO05D007234 2.0e-44 184.5 245 44.5
Cfa027057 Carpinus fangiana HOM05D005639 ORTHO05D007234 5.7e-31 139.8 509 24.8
BcaB01g02186 Brassica carinata HOM05D005639 ORTHO05D007234 2.5e-18 97.8 131 41.2
A08p03340 Brassica napus HOM05D005639 ORTHO05D001462 2.3e-16 91.3 115 44.3
BcaB07g31331 Brassica carinata HOM05D005639 ORTHO05D007234 6.7e-16 89.7 87 49.4
BcaC04g22046 Brassica carinata HOM05D001874 ORTHO05D002166 3.3e-15 87.4 89 47.2
C08p21980 Brassica napus HOM05D005639 ORTHO05D002166 2.4e-13 81.3 150 37.3
A01p33050 Brassica napus HOM05D001874 ORTHO05D002166 3.1e-13 80.9 155 35.5
vmacro19271 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 1.0e-11 75.9 256 26.2
vmacro23261 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 1.0e-11 75.9 256 26.2
BcaB03g11915 Brassica carinata HOM05D005639 ORTHO05D007234 2.7e-09 67.8 131 32.8
vmacro16690 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 2.3e-08 64.7 249 32.1
Lj1g0006305 Lotus japonicus HOM05D000464 ORTHO05D006292 1.5e-07 62.0 251 28.3
Psat7g003840 Pisum sativum HOM05D002288 ORTHO05D002894 1.5e-07 62.0 300 27.7
Nitab4.5_0002059g0020 Nicotiana tabacum HOM05D000453 ORTHO05D000387 4.4e-07 60.5 118 31.4
PGR083G1837 Punica granatum HOM05D000464 ORTHO05D006292 9.8e-07 59.3 257 28.8
TPR.G37555 Trifolium pratense HOM05D000464 ORTHO05D006292 9.8e-07 59.3 257 32.3
unitig_8.g3367 Utricularia gibba HOM05D002634 ORTHO05D003100 1.7e-06 58.5 92 35.9
Actinidia11916 Actinidia chinensis HOM05D000464 ORTHO05D000408 2.2e-06 58.2 392 26.8
SalBow3G0209 Salvia bowleyana HOM05D000645 ORTHO05D000494 2.2e-06 58.2 191 22.0
Lsat_1_v5_gn_6_115620 Lactuca sativa HOM05D002332 ORTHO05D002509 3.7e-06 57.4 102 31.4
Medtr4g104380 Medicago truncatula HOM05D000464 ORTHO05D006292 3.7e-06 57.4 256 27.7
Lj8A202T41 Lonicera japonica HOM05D000645 ORTHO05D000494 6.3e-06 56.6 178 24.7
CDE07G1387 Ceratophyllum demersum HOM05D002288 ORTHO05D002894 8.3e-06 56.2 279 24.0


User provided reference genes

Program Settings