Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 0.0e+00 1320.1 668 100.0
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 0.0e+00 1320.1 668 100.0
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 0.0e+00 1217.6 648 95.7
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 0.0e+00 1146.7 648 89.4
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 0.0e+00 1131.3 647 87.8
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 0.0e+00 1122.8 647 87.0
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 0.0e+00 1122.5 648 86.6
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1120.9 647 86.6
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1118.2 647 86.2
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 0.0e+00 1118.2 647 86.4
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 0.0e+00 1116.7 647 86.6
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 0.0e+00 1116.7 647 85.9
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 0.0e+00 1115.9 648 86.3
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 0.0e+00 1114.8 671 83.6
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 0.0e+00 1112.1 648 85.2
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 0.0e+00 1107.8 652 84.7
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 0.0e+00 1107.4 648 85.6
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 0.0e+00 1107.0 647 85.5
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 0.0e+00 1099.7 647 85.2
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 0.0e+00 1099.7 647 85.3
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1099.0 657 84.8
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 0.0e+00 1099.0 647 84.7
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 0.0e+00 1097.0 647 85.3
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 0.0e+00 1095.9 658 84.2
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1095.5 657 84.3
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 0.0e+00 1094.7 650 84.9
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1093.6 657 84.2
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1093.6 648 84.0
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 0.0e+00 1092.4 648 85.0
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 0.0e+00 1092.4 648 84.1
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1091.6 647 85.2
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 0.0e+00 1090.5 646 85.1
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 0.0e+00 1088.2 647 83.9
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 0.0e+00 1087.4 647 83.0
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 0.0e+00 1085.9 648 83.6
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 0.0e+00 1085.1 648 84.1
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 0.0e+00 1084.7 675 81.8
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 0.0e+00 1084.3 648 83.2
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 0.0e+00 1083.9 649 83.8
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1081.6 647 83.5
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 0.0e+00 1078.9 647 83.0
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 0.0e+00 1078.5 649 82.9
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 0.0e+00 1075.1 649 82.7
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 4.6e-312 1074.3 656 82.0
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 9.1e-312 1073.2 641 83.9
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 1.4e-311 1072.4 649 82.0
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 2.3e-311 1071.6 649 82.1
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 4.1e-311 1070.8 649 82.0
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 5.5e-311 1070.5 695 79.1
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 6.9e-311 1070.1 649 82.4
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 1.2e-310 1069.3 670 81.8
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 3.5e-310 1067.8 649 82.1
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 3.5e-310 1067.8 647 82.7
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 5.9e-310 1067.0 659 81.2
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 1.3e-309 1065.8 649 82.0
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 2.9e-309 1064.7 647 82.2
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 6.5e-309 1063.5 648 82.4
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 1.5e-308 1062.4 647 82.4
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 2.7e-307 1058.1 648 81.9
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 2.7e-307 1058.1 666 80.9
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 3.6e-307 1057.7 649 81.7
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 8.0e-307 1056.6 654 81.0
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 1.8e-306 1055.4 667 79.9
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 1.8e-306 1055.4 648 82.3
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 8.8e-306 1053.1 647 80.5
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 1.5e-305 1052.4 670 80.1
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 5.7e-305 1050.4 646 80.3
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 1.7e-304 1048.9 647 79.9
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 3.7e-304 1047.7 658 80.5
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 7.0e-303 1043.5 653 81.5
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 1.2e-302 1042.7 680 77.9
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 7.7e-302 1040.0 657 80.8
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 2.3e-298 1028.5 649 78.6
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 5.7e-297 1023.8 696 74.9
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 2.4e-295 1018.5 647 78.8
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 3.1e-295 1018.1 648 76.9
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 7.0e-295 1016.9 647 78.8
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 6.1e-291 1003.8 724 72.7
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 1.2e-283 979.5 631 78.9
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 2.0e-281 972.2 670 74.9
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 3.5e-278 961.4 587 81.9
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 1.9e-276 955.7 648 76.1
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 3.4e-273 944.9 647 75.6
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 4.4e-273 944.5 598 79.6
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 1.3e-272 943.0 601 79.9
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 2.3e-269 932.2 648 71.8
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 3.6e-267 924.9 630 71.6
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 1.8e-266 922.5 647 73.3
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 4.9e-264 914.4 658 70.2
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 2.1e-262 909.1 657 73.1
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 2.5e-260 902.1 648 73.8
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 3.4e-257 891.7 648 69.0
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 1.4e-255 886.3 651 67.4
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 1.6e-251 872.8 516 83.1
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 4.7e-251 871.3 622 73.2
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 2.4e-247 859.0 450 95.8
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 3.4e-241 838.6 685 66.1
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 3.0e-237 825.5 685 65.0
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 2.7e-206 722.6 471 73.9
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 3.0e-197 692.6 663 54.8
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 2.7e-177 626.3 389 79.2
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 2.3e-176 623.2 668 51.3
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 7.2e-175 618.2 514 62.8
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 1.7e-171 607.1 651 51.6
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 1.0e-168 597.8 350 87.1
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 1.9e-167 593.6 343 86.6
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 1.0e-160 571.2 356 81.2
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 1.9e-159 567.0 342 83.6
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 1.7e-144 517.3 367 74.7
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 4.3e-143 512.7 303 82.8
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 1.0e-136 491.5 305 78.4
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 5.6e-135 485.7 609 48.8
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 7.3e-135 485.3 304 78.0
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 1.4e-114 417.9 295 72.5
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 2.2e-107 394.0 473 49.9
Actinidia06319 Actinidia chinensis HOM05D004763 ORTHO05D007492 1.6e-81 308.1 213 72.8
SEGI_39045 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 1.1e-77 295.4 214 67.8
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 1.0e-67 262.3 174 75.3
Lju1319C4G3 Lonicera japonica HOM05D004763 ORTHO05D014896 9.5e-58 229.2 234 58.5
TPR.G29742 Trifolium pratense HOM05D004763 ORTHO05D007492 9.8e-55 219.2 241 53.1
TPR.G29743 Trifolium pratense HOM05D004763 ORTHO05D007492 1.1e-53 215.7 218 56.4
Oeu036968.1 Olea europaea HOM05D004763 ORTHO05D007492 1.6e-49 201.8 104 88.5
Lsat_1_v5_gn_1_126941 Lactuca sativa HOM05D004763 ORTHO05D007492 6.1e-49 199.9 221 49.3
Lsat_1_v5_gn_1_127161 Lactuca sativa HOM05D004763 ORTHO05D007492 6.0e-36 156.8 173 51.4
Ca_01269_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 7.8e-36 156.4 89 91.0
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 2.5e-34 151.4 94 81.9
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 3.3e-34 151.0 94 81.9
Aa31LG8G7550 Aethionema arabicum HOM05D004763 ORTHO05D007492 4.3e-34 150.6 463 33.3
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 4.3e-34 150.6 143 54.5
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 2.8e-33 147.9 94 80.9
Thecc.03G073800 Theobroma cacao HOM05D004763 ORTHO05D019264 7.1e-29 133.3 105 66.7
PGSC0003DMG400012096 Solanum tuberosum HOM05D004763 ORTHO05D014896 7.8e-28 129.8 87 74.7
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 1.4e-24 119.0 120 52.5
arahy.Tifrunner.gnm1.ann1.50I1V9 Arachis hypogaea HOM05D004763 ORTHO05D014896 1.4e-21 109.0 68 85.3
arahy.Tifrunner.gnm1.ann1.F7UR4V Arachis hypogaea HOM05D004763 ORTHO05D014896 3.2e-21 107.8 68 83.8
arahy.Tifrunner.gnm1.ann1.G1IAFF Arachis hypogaea HOM05D004763 ORTHO05D014896 5.4e-21 107.1 86 68.6
Lsat_1_v5_gn_3_118680 Lactuca sativa HOM05D004763 ORTHO05D007492 8.7e-19 99.8 55 87.3
Lju1319A4T14 Lonicera japonica HOM05D004763 ORTHO05D019264 8.7e-19 99.8 54 88.9
PGSC0003DMG400026817 Solanum tuberosum HOM05D004763 ORTHO05D026177 1.3e-17 95.9 82 67.1
Sopen04g015550 Solanum pennellii HOM05D000004 ORTHO05D000002 3.6e-17 94.4 97 59.8
TWI60G1170 Tripterygium wilfordii HOM05D004763 ORTHO05D014896 5.3e-16 90.5 49 93.9
arahy.Tifrunner.gnm1.ann1.65KXHR Arachis hypogaea HOM05D004763 ORTHO05D014896 9.0e-16 89.7 49 93.9
arahy.Tifrunner.gnm1.ann1.YT3XVJ Arachis hypogaea HOM05D012186 ORTHO05D009594 1.7e-14 85.5 66 69.7
Lsat_1_v5_gn_1_125620 Lactuca sativa HOM05D004763 ORTHO05D007492 4.2e-13 80.9 203 32.5
Solyc11g028310.3 Solanum lycopersicum HOM05D004763 ORTHO05D026177 3.5e-12 77.8 63 69.8
Lsat_1_v5_gn_1_126960 Lactuca sativa HOM05D004763 ORTHO05D012314 7.3e-10 70.1 68 48.5
Aa31LG8G7540 Aethionema arabicum HOM05D004763 ORTHO05D007492 9.6e-10 69.7 63 57.1
PGSC0003DMG400019106 Solanum tuberosum HOM05D004763 ORTHO05D007492 9.6e-10 69.7 37 86.5
Solyc12g036030.1 Solanum lycopersicum HOM05D004763 ORTHO05D026177 4.0e-08 64.3 105 41.9
Solyc11g028340.3 Solanum lycopersicum HOM05D004763 ORTHO05D019264 2.0e-07 62.0 42 66.7
Lsat_1_v5_gn_8_146221 Lactuca sativa HOM05D004763 ORTHO05D014896 2.2e-06 58.5 33 87.9
arahy.Tifrunner.gnm1.ann1.NZV0HQ Arachis hypogaea HOM05D004763 ORTHO05D014896 2.9e-06 58.2 33 93.9
Solyc11g028350.1 Solanum lycopersicum HOM05D004763 ORTHO05D019264 8.4e-06 56.6 40 62.5


User provided reference genes

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